BAC Information

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BAC

Clone NameB6Ng01-256G07
Chromosome9 (Build37)7 (Build37)
Map Location 90,954,332 - 90,955,408104,272,610 - 104,273,199
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256G07.bB6Ng01-256G07.g
ACCGA062364GA062365
length1,073942
definitionB6Ng01-256G07.b B6Ng01-256G07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,954,332 - 90,955,408)(104,272,610 - 104,273,199)
sequence
gaattcagtgattctggtcgtggtatatatcgagtgcttctgttatccct
aaattcataagtctaaaacataatctccaaagagatgacctgtgcaggta
gccatttgcaagttggagacttcgtgaattacattgtaagacatacgcaa
atgctgcctctgccactagaggacaccatcataaatccttgactcctttg
cattcagtccaaaacctcagaccatagaccagtgtcaaccacaaccagag
caggtctttctacctcagctaatttaatctggaaattccttcagagatgt
tcagtggtttgtcctctagatggtttttggtcctgctaaattgacaatca
atattagccattacagactgggaatctatttcagtggtaaaatgtttacc
tagtatgcaggagacccaccactgtcaaaaataaaaatataagaaagaaa
caataaaaggagataagtacccaccaaagaagagacatttgataagtacc
tgatagatcaacagaacatcccggcagacagaagtacataatcccagctg
ccaaatctaacaactaaatttagttcctaggacccacatgatagagagag
aactaactgccacatatttttatttggtgtccacatgcatacatgcacac
acaagatagataggtaggcaggtagatagatagatagatagatagataga
tagatagatagatagatagatagatagatagatataaaagaacctaagtc
gattcagatactttttttttcattcaaatgataaatattatcatattaac
atgacaaaaagatccagtatagttttgtctttggtaaattataaggtgcc
agtaatataagacagttgcatgcatgggtggaagattatctaaatactac
tgaaagaactattctgagcatccaccacatacagagactaccttacacac
aaagtctgtgcaaaaacttgtatgcaatatacatttctatgatatgaaca
gtatggtgagaatagtttgctttacatagataaatacaccagattttcgg
aaaattgtctcccagtcagactg
gaattcagaatacttgatatcaagaaaacaaataacccagttaaaaatgt
ggtacagatctaaacagaaaattctcaaaagggtaaattcaaatggttga
caaaagccttaaagaaatggaggagctagagaaagtacccaaggagctaa
agggatcttcaaccctataggtggaacaacattatgaactaaccagtacc
cctgagctcttgactctagctgcatatgtatcaaaagatggcctagtcgg
ccatcactggaaagagaggcccattggacacgcagactttgtgtgccccg
gtacaggggaacgccagggccaaagggggggagtgggtgggtaggggacg
tatttggtagatagcatttgcctacattttgggaactttctcttattcta
agtccctttaatatcgtcaagaatttttagctttacatttagaaccttga
tcttttgtggcttttctcctgtttaattagtaagagtcattataatcatc
aggctttagagctagatcacacacacacacacaaacaaaggacccaagtt
cagttcccagaacctccatggaaggttacaactatctataccttcatttc
tagggaatcagagtccttctttctgatatcaagcatgtgtgcacacacat
gcacaggcgcacacacattctgacagaatacttattcacataaaataaaa
ataaatagattttaaaagcaataacaaagaaaagcaaattcacttcataa
ttgtatatacataaatagtttagttttaacagtttcctcattttttcacc
aatggcttctaaggtagaatgattcttattcctcgttcacttctaggact
ctacttttatctgatggtctgaataaagtaaaaatattaaaaatcaagac
catatgggtctttccataataagagttgggggaggcagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90954332_90955408
seq2: B6Ng01-256G07.b_42_1114

seq1  GAATTCAGTGATTCTGGTCGTGGTATATATCGAGTGCTTCTGTTATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATTCTGGTCGTGGTATATATCGAGTGCTTCTGTTATCCCT  50

seq1  AAATTCATAAGTCTAAAACATAATCTCCAAAGAGATGACCTGTGCAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATAAGTCTAAAACATAATCTCCAAAGAGATGACCTGTGCAGGTA  100

seq1  GCCATTTGCAAGTTGGAGACTTCGTGAATTACATTGTAAGACATACGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCAAGTTGGAGACTTCGTGAATTACATTGTAAGACATACGCAA  150

seq1  ATGCTGCCTCTGCCACTAGAGGACACCATCATAAATCCTTGACTCCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCTCTGCCACTAGAGGACACCATCATAAATCCTTGACTCCTTTG  200

seq1  CATTCAGTCCAAAACCTCAGACCATAGACCAGTGTCAACCACAACCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTCCAAAACCTCAGACCATAGACCAGTGTCAACCACAACCAGAG  250

seq1  CAGGTCTTTCTACCTCAGCTAATTTAATCTGGAAATTCCTTCAGAGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTCTACCTCAGCTAATTTAATCTGGAAATTCCTTCAGAGATGT  300

seq1  TCAGTGGTTTGTCCTCTAGATGGTTTTTGGTCCTGCTAAATTGACAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTTGTCCTCTAGATGGTTTTTGGTCCTGCTAAATTGACAATCA  350

seq1  ATATTAGCCATTACAGACTGGGAATCTATTTCAGTGGTAAAATGTTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCCATTACAGACTGGGAATCTATTTCAGTGGTAAAATGTTTACC  400

seq1  TAGTATGCAGGAGACCCACCACTGTCAAAAATAAAAATATAAGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGCAGGAGACCCACCACTGTCAAAAATAAAAATATAAGAAAGAAA  450

seq1  CAATAAAAGGAGATAAGTACCCACCAAAGAAGAGACATTTGATAAGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAGGAGATAAGTACCCACCAAAGAAGAGACATTTGATAAGTACC  500

seq1  TGATAGATCAACAGAACATCCCGGCAGACAGAAGTACATAATCCCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATCAACAGAACATCCCGGCAGACAGAAGTACATAATCCCAGCTG  550

seq1  CCAAATCTAACAACTAAATTTAGTTCCTAGGACCCACATGATAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTAACAACTAAATTTAGTTCCTAGGACCCACATGATAGAGAGAG  600

seq1  AACTAACTGCCACATATTTTTATTTGGTGTCCACATGCATACATGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTGCCACATATTTTTATTTGGTGTCCACATGCATACATGCACAC  650

seq1  ACAAGATAGATAGGTAGGCAGGTAGATAGATAGATAGATAGATAGATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGATAGGTAGGCAGGTAGATAGATAGATAGATAGATAGATAGA  700

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATATAAAAGAACCTAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATATAAAAGAACCTAAGTC  750

seq1  GATTCAGATAC-TTTTTTTTCATTCAAATGATAAATATTATCATATTAAC  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGATACTTTTTTTTTCATTCAAATGATAAATATTATCATATTAAC  800

seq1  ATGACAAAAAGATCCAGTATAGTTTTGTCTTTGGTAAATTATAAGGTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAAGATCCAGTATAGTTTTGTCTTTGGTAAATTATAAGGTGCC  850

seq1  AGTAATATAAGACAGTTGCATGCATGGGTGGAAGATTATCTAAATACTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATAAGACAGTTGCATGCATGGGTGGAAGATTATCTAAATACTAC  900

seq1  TGAAAGAACTATTTCTGAGCATCCACCACATACAGAGACTACCTTACACA  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TGAAAGAACTA-TTCTGAGCATCCACCACATACAGAGACTACCTTACAC-  948

seq1  ACAAAGTCTGTGCAAAAACTTGTATGCAATATACATTTCTATTGATATGA  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAAAGTCTGTGCAAAAACTTGTATGCAATATACATTTCTA-TGATATGA  997

seq1  ACAGTATGGTGAGAATAGTTTTGCTTTACATAAGATTAAATACA-CAGAT  1048
      |||||||||||||||||| |||||||||||| ||| |||||||| |||||
seq2  ACAGTATGGTGAGAATAG-TTTGCTTTACAT-AGA-TAAATACACCAGAT  1044

seq1  TTTCGGAAAATTGTCTTCCCAGT-AGACTG  1077
      ||||||||||||||| ||||||| ||||||
seq2  TTTCGGAAAATTGTC-TCCCAGTCAGACTG  1073

seq1: chr7_104272610_104273199
seq2: B6Ng01-256G07.g_408_1002

seq1  ACGTATTTGGTAGATAGCATTTGCCTACATTTTGGGAACTTTCTCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATTTGGTAGATAGCATTTGCCTACATTTTGGGAACTTTCTCTTATT  50

seq1  CTAAGTCCCTTTAATATCGTCAAGAATTTTTAGCTTTACATTTAGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCCCTTTAATATCGTCAAGAATTTTTAGCTTTACATTTAGAACCT  100

seq1  TGATCTTTTGTGGCTTTTCTCCTGTTTAATTAGTAAGAGTCATTATAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTTGTGGCTTTTCTCCTGTTTAATTAGTAAGAGTCATTATAATC  150

seq1  ATCAGGCTTTAGAGCTAGATCACACACACACACACAAACAAAGGACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTTTAGAGCTAGATCACACACACACACACAAACAAAGGACCCAA  200

seq1  GTTCAGTTCCCAGAACCTCCATGGAAGGTTACAACTATCTATACCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCCCAGAACCTCCATGGAAGGTTACAACTATCTATACCTTCAT  250

seq1  TTCTAGGGAATCAGAGTCCT--CTTCTGATATCAAGCATGTGTGCACACA  298
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TTCTAGGGAATCAGAGTCCTTCTTTCTGATATCAAGCATGTGTGCACACA  300

seq1  CATGCACAGGCGCACACACATTCTGACAGAATACTTATTCACATAAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGGCGCACACACATTCTGACAGAATACTTATTCACATAAAATA  350

seq1  AAAATAAATAGATTTTAAAAGCAATAACAAAG-AAAGCAAATTCACTTCA  397
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAATAAATAGATTTTAAAAGCAATAACAAAGAAAAGCAAATTCACTTCA  400

seq1  TAATTGTATATACATAAATAG-TTAGTTTTAACAGTTTCCTCA-TTTTTC  445
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TAATTGTATATACATAAATAGTTTAGTTTTAACAGTTTCCTCATTTTTTC  450

seq1  AACCATGGCTTCTAAGGTAGAATGATTCTTATTCCTTGTTCACTTCTAGG  495
      | | |||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCAATGGCTTCTAAGGTAGAATGATTCTTATTCCTCGTTCACTTCTAGG  500

seq1  ACTCTACTTTTATCTGATGGTCTGAATAAAGTAAAAATA-TAAAAATCAA  544
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCTACTTTTATCTGATGGTCTGAATAAAGTAAAAATATTAAAAATCAA  550

seq1  GACAATAGTGGTCTTTCCATAATAAAGAGTTGGGGGAGGCAGAGTG  590
      ||| |||  |||||||||||||| ||||||||||||||||||||||
seq2  GACCATATGGGTCTTTCCATAAT-AAGAGTTGGGGGAGGCAGAGTG  595