BAC Information

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BAC

Clone NameB6Ng01-256J12
Chromosome7 (Build37)
Map Location 20,247,679 - 20,395,950
singlet/doubletdoublet
Overlap geneClptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3
Upstream geneEG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb
Downstream geneCeacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256J12.bB6Ng01-256J12.g
ACCGA062513GA062514
length891,052
definitionB6Ng01-256J12.b B6Ng01-256J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,247,679 - 20,247,767)(20,394,902 - 20,395,950)
sequence
actgcctagaccactaataaaacagaacaaaacaaaacttcttccaactt
accatctctgcccagcctaagctgggggggggggggggg
gaattcaaacgccgtttttctggaagaccaaccagtgctcttaaccaatg
agccatctctttatccctcaagacttttttttttaatttggggggctttg
ggggatgtttcgttttgtttttgagatagagtcccactacagagccctgg
ctgtcccataactcattatgtagaccaggctagcctttaactcagagatc
ttcctgcctctgcttcccaagtgtttgggattgaaggggtatgccaccat
acctggactgttttaaaaatcagatttggttggctatattgtggaggtca
gagggcagtgtgtgggcatcagaagtcctctccttccatcatgtgagccc
tggggatggagctcaggtcagtcctgacagcaggcccctttacctgatga
gccatctatcagcacgcatggctggttttcaagtcttttatttcacttcc
tgggatgccaatttgtccattcctgttgccctgccagcctaggcttcgct
ttgggatgccatactaaccctgcctctgtctttcaccatgtcctctgtcc
ttctgccctaattccatctataccatctggagtcacagaccttttcctcc
cttgcataactggaccacagtctctcctagagactaggagagggccgatt
tctcctagcttccctccttggagtcccatgtagccaaggcatttcaacac
actttttagctcaggttaaccttgacctcctgatcttcatgcattcactc
tccaagtgctaggattacagacctacgtcatttttgacacagccccatgt
ccagaatcatttcagttctagctgtcggaatgagccctagttgtgatcac
ctgtccgtccccttcacctagctgacgccaggccaagcgaggccattggc
ccacgtgactctttgactcgaatttctccgtcccacagcacggcgccaac
gttgacgctcagatgtattctggccagcttcggctctgcatttctgcgtc
tggaccgcggcttctgcctctggtgcgcacgctgttgcgcagtcgggctg
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20247679_20247767
seq2: B6Ng01-256J12.b_49_137

seq1  ACTGCCTAGACCACTAATAAAACAGAACAAAACAAAACTTCTTCCAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAGACCACTAATAAAACAGAACAAAACAAAACTTCTTCCAACTT  50

seq1  ACCATCTCTGCCCAGCCTAAGCTGGGGGGGGGGGGGGGG  89
      |||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTGCCCAGCCTAAGCTGGGGGGGGGGGGGGGG  89

seq1: chr7_20394902_20395950
seq2: B6Ng01-256J12.g_65_1116 (reverse)

seq1  GTCAGCCCCGCTGCGCACCAGCGTGCGCACCAGAGGCAGAAGCCCGCGG-  49
      ||||||||  ||||||| |||||||||||||||||||||||| |||||| 
seq2  GTCAGCCCGACTGCGCAACAGCGTGCGCACCAGAGGCAGAAG-CCGCGGT  49

seq1  CCAGACGCAG-AATGCAGAGCCG-AGCT-GCCAGAATACATCTGAGCGTT  96
      |||||||||| |||||||||||| |||| |||||||||||||||||||| 
seq2  CCAGACGCAGAAATGCAGAGCCGAAGCTGGCCAGAATACATCTGAGCGTC  99

seq1  CACGTTGGCGCCGTGCTGTGGGACGGAGAAATTCGAGTC-AAGAGTCACG  145
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACGTTGGCGCCGTGCTGTGGGACGGAGAAATTCGAGTCAAAGAGTCACG  149

seq1  TGGGCCAATGGCCTCGCTTGGCCTGGCGTCAGCTAGGTGAAGGGGACGGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAATGGCCTCGCTTGGCCTGGCGTCAGCTAGGTGAAGGGGACGGA  199

seq1  CAGGTGATCACAACTAGGGCTCATTCCGACAGCTAGAACCTGAAATGATT  245
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGGTGATCACAACTAGGGCTCATTCCGACAGCTAGAA-CTGAAATGATT  248

seq1  CTGGACATGGGGCTGTGTCAAAAATGACGTAGGTCTGTAATCCTAGCACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATGGGGCTGTGTCAAAAATGACGTAGGTCTGTAATCCTAGCACT  298

seq1  TGGAGAGTGAATGCATGAAGATCAGGAGGTCAAGGTTAACCTGAGCTAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTGAATGCATGAAGATCAGGAGGTCAAGGTTAACCTGAGCTAAA  348

seq1  AAGTGTGTTGAAATGCCTTGGCTACATGGGACTCCAAGGAGGGAAGCTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTGAAATGCCTTGGCTACATGGGACTCCAAGGAGGGAAGCTAG  398

seq1  GAGAAATCGGCCCTCTCCTAGTCTCTAGGAGAGACTGTGGTCCAGTTATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCGGCCCTCTCCTAGTCTCTAGGAGAGACTGTGGTCCAGTTATG  448

seq1  CAAGGGAGGAAAAGGTCTGTGACTCCAGATGGTATAGATGGAATTAGGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGGAAAAGGTCTGTGACTCCAGATGGTATAGATGGAATTAGGGC  498

seq1  AGAAGGACAGAGGACATGGTGAAAGACAGAGGCAGGGTTAGTATGGCATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACAGAGGACATGGTGAAAGACAGAGGCAGGGTTAGTATGGCATC  548

seq1  CCAAAGCGAAGCCTAGGCTGGCAGGGCAACAGGAATGGACAAATTGGCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCGAAGCCTAGGCTGGCAGGGCAACAGGAATGGACAAATTGGCAT  598

seq1  CCCAGGAAGTGAAATAAAAGACTTGAAAACCAGCCATGCGTGCTGATAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGTGAAATAAAAGACTTGAAAACCAGCCATGCGTGCTGATAGA  648

seq1  TGGCTCATCAGGTAAAGGGGCCTGCTGTCAGGACTGACCTGAGCTCCATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATCAGGTAAAGGGGCCTGCTGTCAGGACTGACCTGAGCTCCATC  698

seq1  CCCAGGGCTCACATGATGGAAGGAGAGGACTTCTGATGCCCACACACTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTCACATGATGGAAGGAGAGGACTTCTGATGCCCACACACTGC  748

seq1  CCTCTGACCTCCACAATATAGCCAACCAAATCTGATTTTTAAAACAGTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTCCACAATATAGCCAACCAAATCTGATTTTTAAAACAGTCC  798

seq1  AGGTATGGTGGCATACCCCTTCAATCCCAAACACTTGGGAAGCAGAGGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGTGGCATACCCCTTCAATCCCAAACACTTGGGAAGCAGAGGCA  848

seq1  GGAAGATCTCTGAGTTAAAGGCTAGCCTGGTCTACATAATGAGTTATGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCTCTGAGTTAAAGGCTAGCCTGGTCTACATAATGAGTTATGGG  898

seq1  ACAGCCAGGGCTCTGTAGTGGGACTCTATCTCAAAAACAAAACGAAACAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTCTGTAGTGGGACTCTATCTCAAAAACAAAACGAAACAT  948

seq1  CCCCCAAAGCCCCCCAAATTAAAAAAAAAAGTCTTGAGGGATAAAGAGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAGCCCCCCAAATTAAAAAAAAAAGTCTTGAGGGATAAAGAGAT  998

seq1  GGCTCATTGGTTAAGAGCACTGGTTGGTCTTCCAGAAAAACGGCGTTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTGGTTAAGAGCACTGGTTGGTCTTCCAGAAAAACGGCGTTTGA  1048

seq1  ATTC  1049
      ||||
seq2  ATTC  1052