BAC Information

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BAC

Clone NameB6Ng01-257C09
Chromosome7 (Build37)
Map Location 73,180,413 - 73,324,537
singlet/doubletdoublet
Overlap genePcsk6, Snrpa1, H47, Chsy1
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
Downstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257C09.bB6Ng01-257C09.g
ACCGA062921GA062922
length1,1501,172
definitionB6Ng01-257C09.b B6Ng01-257C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,323,373 - 73,324,537)(73,180,413 - 73,181,600)
sequence
gaattctatgtgattctgagtcttggggctcatgaatattttcctcctca
tttgaaactgagaggcagccaggaaggatgcttgctatggggcactcctc
ccgggaggtagggagagggccctgggtggaattgcgcagtggagcagtca
gggagcaattagctgcggttcaaagggaagcgccaccctgagcagccctc
acatgaggggaggctagagagatggtgtgcgcatgcctacagcctctgag
ctaacagaagcaagtggaagccaaacatattccttgcttcagcgctggcc
ctggcagctgagaggaaacttctgggcaggcacagcacctaaggctgccc
agcgacttctggcagacccacaggaaaccagctggggctggacagggctt
tccaatccgtccacactgatgaaatctaccagtcacatccgcccaaggat
gtggcccagacagtcactgccctgacaagccatctcagagaaacggctgg
cactcaggatcttgagggcacagcctctcagggggaaaggcctacctctg
aatctaattttaaagacccacgagtcataatgtaaactcatttcccattg
atggttgccacatctacctctggaccttggaaagtcgctagggcagatat
gactatggtcagttccctgcagcccaaggtccctaacgaaatcctcaggg
cactggtgctgggggtgggacaagtgctgtccctgcccagctgtcttcct
ttgcccactcttctgatacaactcccatttgtggagtcttcattgctgga
acaaacccatggctaaacactatcttccaacttagtgatgtactgggtct
tccgggaacatcaaagccaacatccattttcttgtttttttgttttgttt
tgttaggtttttttgagacacggtttttctgtgtagtcttggctatccta
taatttgctctgtagaccaggctggcctcaaacttagagatccacccgcc
tctgcctccagagtgttgggattaaagtgtatgcaccatccccatcgaca
gttaagaaatctttacctacactattaattaatttttataaaatagcctt
caacctagctaggcacagctagtagctcatggtgccattcagtcaccccc

gaattcctaggaagcacatggcactttcctctgcagtagtaaacccctct
actccagttcccctcctggcccaggtcacagctgcagtggctggcctacc
ctccttcctggccatcctcctagtggtgagattttcccccctcaccacct
cagctttctccttcatccagaaagtcaacttggctccctgaggatgttcc
gtcatttcttgatcctccctgttccacagcgctattttaaattcttttgt
ttgaatcatttactgcagccaagtgtctcctgtagtgacacttgcattta
gtgacatcaaaatgcatattaccagttaccatcccaaagtttggaaagca
tatattaagaaagctgtagacacacccatgcagagagtctagccccatgg
gctccttggaaagaaagaagtagaaggagtcatcagggcttaggaacctc
aggggtttctgtccaaacgacagtgaggctaggtgaagcccgagcgcctg
tatttccagcagatgcccaggtgaggggatgctgtggtccagaccggggg
cagcaggtgcaccaggagacccttcaaggctgcatcccactcacccagct
caccctctcctcccactgctgctgaggctagagctcacctcagaggggaa
gctctgtaatgaggaacgacggatgagtgagtacatagagaccttagaaa
cggccaaggccgtagagaccatctgctctttctgcaaatgttccaccaat
ggtgccccatttaacctttatcgcaacttatgaagtcattggtgttacac
acggttttcatgcaggggagatcaatgaatgtcccagaaggctccatgtg
actgccttggtgacattgcctgcatcctgccctttcacatcagagtctgg
gggacaggaagggaaagcaagacctttccaacttgtcacatcgtacttgc
tgctcctttaaacctgttagctagacagagcagattaggagcaagggtcc
aggatccacgctcagagatattcccccagaaggaataatagctgaaagaa
ggagacattttactagagccatgctggggctgagaggagcggcttatatc
ctgggctcctctagcactggtgtgggccctcaagctggtctgctagctta
agtacaaggatgaaggactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_73323373_73324537
seq2: B6Ng01-257C09.b_48_1197 (reverse)

seq1  GGGGGTGAACTTGATTGGCAACCATGGAGCTACTTAACCTGTGCCCTAGG  50
      ||||||||   ||| |||| ||||| ||||||||  | ||||| |||| |
seq2  GGGGGTGA--CTGAATGGC-ACCAT-GAGCTACT--AGCTGTG-CCTA-G  42

seq1  CTAGTTTTGAAGGCTATTTTATAAAATTACATTTAATAGGTGTTAGTTAA  100
      ||||  |||||||||||||||||||| |  | |||||| ||||  || ||
seq2  CTAG-GTTGAAGGCTATTTTATAAAAAT-TAATTAATA-GTGTAGGTAAA  89

seq1  GATTTTTTTTACTGTCGATTGGGGATGGTGGCATACACCTTTAATCCCAA  150
      || ||| || |||||||| |||||||||| ||||||| ||||||||||||
seq2  GA-TTTCTTAACTGTCGA-TGGGGATGGT-GCATACA-CTTTAATCCCAA  135

seq1  CACTCTGGAGGCAGAGGCGGGTGGATCTCTAAGTTTGAGGCCAGCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGAGGCAGAGGCGGGTGGATCTCTAAGTTTGAGGCCAGCCTGGT  185

seq1  CTACAGAGCAAATTATAGGATAGCCAAGACTACACAGAAAAACCGTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGCAAATTATAGGATAGCCAAGACTACACAGAAAAACCGTGTCT  235

seq1  CAAAAAAACCTAACAAAACAAAACAAAAAAACAAGAAAATGGATGTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACCTAACAAAACAAAACAAAAAAACAAGAAAATGGATGTTGGC  285

seq1  TTTGATGTTCCCGGAAGACCCAGTACATCACTAAGTTGGAAGATAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTCCCGGAAGACCCAGTACATCACTAAGTTGGAAGATAGTGTT  335

seq1  TAGCCATGGGTTTGTTCCAGCAATGAAGACTCCACAAATGGGAGTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGGGTTTGTTCCAGCAATGAAGACTCCACAAATGGGAGTTGTAT  385

seq1  CAGAAGAGTGGGCAAAGGAAGACAGCTGGGCAGGGACAGCACTTGTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGTGGGCAAAGGAAGACAGCTGGGCAGGGACAGCACTTGTCCCA  435

seq1  CCCCCAGCACCAGTGCCCTGAGGATTTCGTTAGGGACCTTGGGCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCACCAGTGCCCTGAGGATTTCGTTAGGGACCTTGGGCTGCAGG  485

seq1  GAACTGACCATAGTCATATCTGCCCTAGCGACTTTCCAAGGTCCAGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACCATAGTCATATCTGCCCTAGCGACTTTCCAAGGTCCAGAGGT  535

seq1  AGATGTGGCAACCATCAATGGGAAATGAGTTTACATTATGACTCGTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGCAACCATCAATGGGAAATGAGTTTACATTATGACTCGTGGGT  585

seq1  CTTTAAAATTAGATTCAGAGGTAGGCCTTTCCCCCTGAGAGGCTGTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATTAGATTCAGAGGTAGGCCTTTCCCCCTGAGAGGCTGTGCCC  635

seq1  TCAAGATCCTGAGTGCCAGCCGTTTCTCTGAGATGGCTTGTCAGGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCCTGAGTGCCAGCCGTTTCTCTGAGATGGCTTGTCAGGGCAGT  685

seq1  GACTGTCTGGGCCACATCCTTGGGCGGATGTGACTGGTAGATTTCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTGGGCCACATCCTTGGGCGGATGTGACTGGTAGATTTCATCAG  735

seq1  TGTGGACGGATTGGAAAGCCCTGTCCAGCCCCAGCTGGTTTCCTGTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACGGATTGGAAAGCCCTGTCCAGCCCCAGCTGGTTTCCTGTGGGT  785

seq1  CTGCCAGAAGTCGCTGGGCAGCCTTAGGTGCTGTGCCTGCCCAGAAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAAGTCGCTGGGCAGCCTTAGGTGCTGTGCCTGCCCAGAAGTTT  835

seq1  CCTCTCAGCTGCCAGGGCCAGCGCTGAAGCAAGGAATATGTTTGGCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCTGCCAGGGCCAGCGCTGAAGCAAGGAATATGTTTGGCTTCC  885

seq1  ACTTGCTTCTGTTAGCTCAGAGGCTGTAGGCATGCGCACACCATCTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCTGTTAGCTCAGAGGCTGTAGGCATGCGCACACCATCTCTCT  935

seq1  AGCCTCCCCTCATGTGAGGGCTGCTCAGGGTGGCGCTTCCCTTTGAACCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCCTCATGTGAGGGCTGCTCAGGGTGGCGCTTCCCTTTGAACCG  985

seq1  CAGCTAATTGCTCCCTGACTGCTCCACTGCGCAATTCCACCCAGGGCCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATTGCTCCCTGACTGCTCCACTGCGCAATTCCACCCAGGGCCCT  1035

seq1  CTCCCTACCTCCCGGGAGGAGTGCCCCATAGCAAGCATCCTTCCTGGCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACCTCCCGGGAGGAGTGCCCCATAGCAAGCATCCTTCCTGGCTG  1085

seq1  CCTCTCAGTTTCAAATGAGGAGGAAAATATTCATGAGCCCCAAGACTCAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGTTTCAAATGAGGAGGAAAATATTCATGAGCCCCAAGACTCAG  1135

seq1  AATCACATAGAATTC  1165
      |||||||||||||||
seq2  AATCACATAGAATTC  1150

seq1: chr7_73180413_73181600
seq2: B6Ng01-257C09.g_64_1235

seq1  GAATTCCTAGGAAGCACATGGCACTTTCCTCTGCAGTAGTAAACCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGAAGCACATGGCACTTTCCTCTGCAGTAGTAAACCCCTCT  50

seq1  ACTCCAGTTCCCCTCCTGGCCCAGGTCACAGCTGCAGTGGCTGGCCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTCCCCTCCTGGCCCAGGTCACAGCTGCAGTGGCTGGCCTACC  100

seq1  CTCCTTCCTGGCCATCCTCCTAGTGGTGAGATTTTCCCCCCTCACCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTGGCCATCCTCCTAGTGGTGAGATTTTCCCCCCTCACCACCT  150

seq1  CAGCTTTCTCCTTCATCCAGAAAGTCAACTTGGCTCCCTGAGGATGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTCCTTCATCCAGAAAGTCAACTTGGCTCCCTGAGGATGTTCC  200

seq1  GTCATTTCTTGATCCTCCCTGTTCCACAGCGCTATTTTAAATTCTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTTGATCCTCCCTGTTCCACAGCGCTATTTTAAATTCTTTTGT  250

seq1  TTGAATCATTTACTGCAGCCAAGTGTCTCCTGTAGTGACACTTGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCATTTACTGCAGCCAAGTGTCTCCTGTAGTGACACTTGCATTTA  300

seq1  GTGACATCAAAATGCATATTACCAGTTACCATCCCAAAGTTTGGAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAAAATGCATATTACCAGTTACCATCCCAAAGTTTGGAAAGCA  350

seq1  TATATTAAGAAAGCTGTAGACACACCCATGCAGAGAGTCTAGCCCCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAGAAAGCTGTAGACACACCCATGCAGAGAGTCTAGCCCCATGG  400

seq1  GCTCCTTGGAAAGAAAGAAGTAGAAGGAGTCATCAGGGCTTAGGAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGAAAGAAAGAAGTAGAAGGAGTCATCAGGGCTTAGGAACCTC  450

seq1  AGGGGTTTCTGTCCAAACGACAGTGAGGCTAGGTGAAGCCCGAGCGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTCTGTCCAAACGACAGTGAGGCTAGGTGAAGCCCGAGCGCCTG  500

seq1  TATTTCCAGCAGATGCCCAGGTGAGGGGATGCTGTGGTCCAGACCGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAGCAGATGCCCAGGTGAGGGGATGCTGTGGTCCAGACCGGGGG  550

seq1  CAGCAGGTGCACCAGGAGACCCTTCAAGGCTGCATCCCACTCACCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTGCACCAGGAGACCCTTCAAGGCTGCATCCCACTCACCCAGCT  600

seq1  CACCCTCTCCTCCCACTGCTGCTGAGGCTAGAGCTCACCTCAGAGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTCCTCCCACTGCTGCTGAGGCTAGAGCTCACCTCAGAGGGGAA  650

seq1  GCTCTGTAATGAGGAACGACGGATGAGTGAGTACATAGAGACCTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAATGAGGAACGACGGATGAGTGAGTACATAGAGACCTTAGAAA  700

seq1  CGGCCAAGGCCGTAGAGACCATCTGCTCTTTCTGCAAATGTTCCACCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAAGGCCGTAGAGACCATCTGCTCTTTCTGCAAATGTTCCACCAAT  750

seq1  GGTGCCCCATTTAACCTTTATCGCAACTTATGAAGTCATTGGTGTTACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCCATTTAACCTTTATCGCAACTTATGAAGTCATTGGTGTTACAC  800

seq1  ACGGTTTTCATGCAGGGGAGATCAATGAATGTCCCAGAAGGCTCCATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTTCATGCAGGGGAGATCAATGAATGTCCCAGAAGGCTCCATGTG  850

seq1  ACTGCCTTGGTGACATTGCCTGCATCCTGCCCTTTCACATCAGAGTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTGGTGACATTGCCTGCATCCTGCCCTTTCACATCAGAGTCTGG  900

seq1  GGGACAGGAAGGGAAAGCAAGACC-TTCCAACTTGTCACATCGTACTTGC  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGACAGGAAGGGAAAGCAAGACCTTTCCAACTTGTCACATCGTACTTGC  950

seq1  TGCTCCTTTAAACCTGTTAGCTAGACAGAGCAAGATTAGGAGCAAAGGGT  999
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TGCTCCTTTAAACCTGTTAGCTAGACAGAGC-AGATTAGGAGC-AAGGGT  998

seq1  CCAGGATCCACGGCTCCAGGAAGATATCCCCCCAGAAGGGAATATAGCTG  1049
      ||||||||||| ||| |||  |||||| ||||||||||| |  |||||||
seq2  CCAGGATCCAC-GCT-CAG--AGATATTCCCCCAGAAGGAATAATAGCTG  1044

seq1  AGAGAAAGGAGACATTTTACTAGAGGCCATGGCTGGGGGCTGAGAGGAGC  1099
      | || ||||||||||||||||||| ||||| ||| |||||||||||||| 
seq2  AAAG-AAGGAGACATTTTACTAGA-GCCAT-GCT-GGGGCTGAGAGGAG-  1089

seq1  CGGCTTTAATATCCTGGGCTCCTCTAGCACTGGTGTGGGCCCTCAAACCC  1149
      ||||||  ||||||||||||||||||||||||||||||||||||||   |
seq2  CGGCTT--ATATCCTGGGCTCCTCTAGCACTGGTGTGGGCCCTCAA--GC  1135

seq1  TGGGCTGCTAGCATAAGGTACAAAGGATAGAAGACTGTG  1188
      ||| |||||||| ||| |||| ||||||  | |||||||
seq2  TGGTCTGCTAGCTTAA-GTAC-AAGGATGAAGGACTGTG  1172