BAC Information

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BAC

Clone NameB6Ng01-257G20
Chromosome7 (Build37)
Map Location 52,564,808 - 52,708,956
singlet/doubletdoublet
Overlap geneTrpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1
Upstream geneShank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik
Downstream geneFtl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257G20.bB6Ng01-257G20.g
ACCGA063129GA063130
length1,1561,153
definitionB6Ng01-257G20.b B6Ng01-257G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,707,808 - 52,708,956)(52,564,808 - 52,565,959)
sequence
gaattccaagtgtttctgagatgccaggttatgtgagtgctgcctgatct
cttcctaaacacactgagccatctctccagcttctctgtctctctgtctg
tctgtctgtctctctctctgtttccttttttccttgaggcaaggtcttgc
tatgtagactaggatggctttgcactcacagtctatgcctgtaaagtgct
gggattaaaggcagacaaccccacacctggctttcaccttgtttcttgag
gcggggacttgccataaataggatgctggctgtccagtgaatcccaggta
ccccttttttctttctttctttctttctttctttctttctttctttcttt
ctttcttccttccttccttcctttctttctttcagtttttcgagacaggg
tttctctgtgtagtcttagctgtcctggaactcactttatagaccaggct
ggccttgaactcagaaatccacctgcctctgcctctcaagtgctgcgatt
aaaggcgtgcgccaacacgcctagctctttctttcttttttatttatttg
tttgctgagacagagcttcttgccttctagccttgcctgtcactgaactc
actatgtagatcaggctggccttgaactcagagatttgcttccagagtgc
taggtaccaccactgcctggccccaagtatcctctttttcttcttttaaa
agacttatttatttattatgtatgagtacactataagagggcatcagatc
tcattacagatggttgtgagccaccatgtggttgctgggatttgaactca
ggacctctggaagaacagtcagtgctcttaacctctgggccatctcgaca
gctcctccaggtattctcttatctttaccttccagtgctaaaatcacagg
gatcatcatattgggatttaaaaaaaaatatgtgtgtatgagtgttttat
ctgcatgtgttctaggtatcagaagtatgtctggtacccacagaagccaa
gaggatatcaatctgctggaagtggaatttacagatgtttgtgagccacc
atggtggggtgctggaactgaaccctagtctctgggaagagcagccaatg
cttgtgtctctagctctgaacaacagttctttttgcttgatgttggtgtt
tgtttg
gaattccagacaggcctgccagggctacagagtgagaccctgtttcccca
caaaaggggagggatcccctaaaatatggagtgacggtcaggggtgcata
aatgaaaacatttacaggctgcagactgacagaggttgtaagtctgattt
gattgacagcttgaggttacaaagcaccaggtattgcctagcatgtcctc
atgggggcgctcacagctaccgctctcaggcaggcagacaatggggccag
ctatttagacagaaatccgcggatgaaactatccacccggcctttgaccc
cacccactttacaccagggacgtgacttggttttattcggttttgttttt
tgttttgcaataacctaagtgtggatctggagggcacgggcttaaaggag
gacaagccaattatactggatgtgacagtgtttcttcctccctagatgca
atgatttgtcagcccttggaaaagggtgcttgataaaatgtatcaaatat
acccttgacagtggctttcctgcaatcggcagggccgtggccctgtcttc
tcagacaacacataacactaaataaaggctgggacaagcagaaatattag
tttgctaagtccacttatctcccttctgtttggataaattattcatacca
agttactctgtttcaaacgcacatggactggaggaaatctacctcttggt
atgccagctgaggatcgcttcagtaaagggggacgtaggtgactctccat
cacccagggtactccaccactgagccatagccacatcctctcactggggg
attctaggcaggggccctgccagtctcttactcactcaccggcagcctac
gcccagcaggaagcaggtgagtgccagcaggtcacattgggttccaggta
tctgagaggtagaggtgcagccgatggccgcagggagctctgtccggacc
acgtccccccactggccaggctaccccagccacaacccaggccctggcgc
agctcctcgcacagcaacgtgaaggcccaagagtacagcagcagctcgag
aacacttggctttgtgggctgaatccaccagcaacacgttgggcaaacag
cagcagaacagcagtaactgaactacatttaccaggaaggcagtcacttg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52707808_52708956
seq2: B6Ng01-257G20.b_43_1198 (reverse)

seq1  CAAACAAACA-----AACAAGCAAAAAAGAAACTGTTG-TCAGAGCTAGA  44
      ||||||||||     | ||||||||||   |||||||| |||||||||||
seq2  CAAACAAACACCAACATCAAGCAAAAA--GAACTGTTGTTCAGAGCTAGA  48

seq1  GACAC-AGCATTGGCTGCTCTTCCAGAAGACTAGGGTTCAGTTCCAGCAC  93
      ||||| ||||||||||||||||||   |||||||||||||||||||||||
seq2  GACACAAGCATTGGCTGCTCTTCCCAGAGACTAGGGTTCAGTTCCAGCAC  98

seq1  CC--ACATGGTGGCTCACAAACATCTGT-AATTCCACTTCCAGCAGATTT  140
      ||   ||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CCCACCATGGTGGCTCACAAACATCTGTAAATTCCACTTCCAGCAGA-TT  147

seq1  GATATCCTCTTGGCTTCTGTGGGTACCAGACATACTTCTGATACCTAGAA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCTCTTGGCTTCTGTGGGTACCAGACATACTTCTGATACCTAGAA  197

seq1  CACATGCAGATAAAACACTCATACACACATATTTTTTTTTAAATCCCAAT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAGATAAAACACTCATACACACATATTTTTTTTTAAATCCCAAT  247

seq1  ATGATGATCCCTGTGATTTTAGCACTGGAAGGTAAAGATAAGAGAATACC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATCCCTGTGATTTTAGCACTGGAAGGTAAAGATAAGAGAATACC  297

seq1  TGGAGGAGCTGTCGAGATGGCCCAGAGGTTAAGAGCACTGACTGTTCTTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGCTGTCGAGATGGCCCAGAGGTTAAGAGCACTGACTGTTCTTC  347

seq1  CAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  397

seq1  CTGTAATGAGATCTGATGCCCTCTTATAGTGTACTCATACATAATAAATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGAGATCTGATGCCCTCTTATAGTGTACTCATACATAATAAATA  447

seq1  AATAAGTCTTTTAAAAGAAGAAAAAGAGGATACTTGGGGCCAGGCAGTGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCTTTTAAAAGAAGAAAAAGAGGATACTTGGGGCCAGGCAGTGG  497

seq1  TGGTACCTAGCACTCTGGAAGCAAATCTCTGAGTTCAAGGCCAGCCTGAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTAGCACTCTGGAAGCAAATCTCTGAGTTCAAGGCCAGCCTGAT  547

seq1  CTACATAGTGAGTTCAGTGACAGGCAAGGCTAGAAGGCAAGAAGCTCTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTGAGTTCAGTGACAGGCAAGGCTAGAAGGCAAGAAGCTCTGT  597

seq1  CTCAGCAAACAAATAAATAAAAAAGAAAGAAAGAGCTAGGCGTGTTGGCG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAACAAATAAATAAAAAAGAAAGAAAGAGCTAGGCGTGTTGGCG  647

seq1  CACGCCTTTAATCGCAGCACTTGAGAGGCAGAGGCAGGTGGATTTCTGAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCGCAGCACTTGAGAGGCAGAGGCAGGTGGATTTCTGAG  697

seq1  TTCAAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCTAAGACTAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCTAAGACTAC  747

seq1  ACAGAGAAACCCTGTCTCGAAAAACTGAAAGAAAGAAAGGAAGGAAGGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAAAACTGAAAGAAAGAAAGGAAGGAAGGAA  797

seq1  GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  847

seq1  AAAAAGGGGTACCTGGGATTCACTGGACAGCCAGCATCCTATTTATGGCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGGTACCTGGGATTCACTGGACAGCCAGCATCCTATTTATGGCA  897

seq1  AGTCCCCGCCTCAAGAAACAAGGTGAAAGCCAGGTGTGGGGTTGTCTGCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCGCCTCAAGAAACAAGGTGAAAGCCAGGTGTGGGGTTGTCTGCC  947

seq1  TTTAATCCCAGCACTTTACAGGCATAGACTGTGAGTGCAAAGCCATCCTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTTTACAGGCATAGACTGTGAGTGCAAAGCCATCCTA  997

seq1  GTCTACATAGCAAGACCTTGCCTCAAGGAAAAAAGGAAACAGAGAGAGAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATAGCAAGACCTTGCCTCAAGGAAAAAAGGAAACAGAGAGAGAG  1047

seq1  ACAGACAGACAGACAGAGAGACAGAGAAGCTGGAGAGATGGCTCAGTGTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGAGAGACAGAGAAGCTGGAGAGATGGCTCAGTGTG  1097

seq1  TTTAGGAAGAGATCAGGCAGCACTCACATAACCTGGCATCTCAGAAACAC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGAGATCAGGCAGCACTCACATAACCTGGCATCTCAGAAACAC  1147

seq1  TTGGAATTC  1149
      |||||||||
seq2  TTGGAATTC  1156

seq1: chr7_52564808_52565959
seq2: B6Ng01-257G20.g_66_1218

seq1  GAATTCCAGACAGGCCTGCCAGGGCTACAGAGTGAGACCCTGTTTCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGGCCTGCCAGGGCTACAGAGTGAGACCCTGTTTCCCCA  50

seq1  CAAAAGGGGAGGGATCCCCTAAAATATGGAGTGACGGTCAGGGGTGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGGAGGGATCCCCTAAAATATGGAGTGACGGTCAGGGGTGCATA  100

seq1  AATGAAAACATTTACAGGCTGCAGACTGACAGAGGTTGTAAGTCTGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACATTTACAGGCTGCAGACTGACAGAGGTTGTAAGTCTGATTT  150

seq1  GATTGACAGCTTGAGGTTACAAAGCACCAGGTATTGCCTAGCATGTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACAGCTTGAGGTTACAAAGCACCAGGTATTGCCTAGCATGTCCTC  200

seq1  ATGGGGGCGCTCACAGCTACCGCTCTCAGGCAGGCAGACAATGGGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCGCTCACAGCTACCGCTCTCAGGCAGGCAGACAATGGGGCCAG  250

seq1  CTATTTAGACAGAAATCCGCGGATGAAACTATCCACCCGGCCTTTGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGACAGAAATCCGCGGATGAAACTATCCACCCGGCCTTTGACCC  300

seq1  CACCCACTTTACACCAGGGACGTGACTTGGTTTTATTCGGTTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTTTACACCAGGGACGTGACTTGGTTTTATTCGGTTTTGTTTTT  350

seq1  TGTTTTGCAATAACCTAAGTGTGGATCTGGAGGGCACGGGCTTAAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCAATAACCTAAGTGTGGATCTGGAGGGCACGGGCTTAAAGGAG  400

seq1  GACAAGCCAATTATACTGGATGTGACAGTGTTTCTTCCTCCCTAGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCCAATTATACTGGATGTGACAGTGTTTCTTCCTCCCTAGATGCA  450

seq1  ATGATTTGTCAGCCCTTGGAAAAGGGTGCTTGATAAAATGTATCAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGTCAGCCCTTGGAAAAGGGTGCTTGATAAAATGTATCAAATAT  500

seq1  ACCCTTGACAGTGGCTTTCCTGCAATCGGCAGGGCCGTGGCCCTGTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGACAGTGGCTTTCCTGCAATCGGCAGGGCCGTGGCCCTGTCTTC  550

seq1  TCAGACAACACATAACACTAAATAAAGGCTGGGACAAGCAGAAATATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAACACATAACACTAAATAAAGGCTGGGACAAGCAGAAATATTAG  600

seq1  TTTGCTAAGTCCACTTATCTCCCTTCTGTTTGGATAAATTATTCATACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAGTCCACTTATCTCCCTTCTGTTTGGATAAATTATTCATACCA  650

seq1  AGTTACTCTGTTTCAAACGCACATGGACTGGAGGAAATCTACCTCTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTGTTTCAAACGCACATGGACTGGAGGAAATCTACCTCTTGGT  700

seq1  ATGCCAGCTGAGGATCGCTTCAGTAAAGGGGGACGTAGGTGACTCTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCTGAGGATCGCTTCAGTAAAGGGGGACGTAGGTGACTCTCCAT  750

seq1  CACCCAGGGTACTCCACCACTGAGCCATAGCCACATCCTCTCACTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGTACTCCACCACTGAGCCATAGCCACATCCTCTCACTGGGGG  800

seq1  ATTCTAGGCAGGGGCCCTGCCAGTCTCTTACTCACTCACCGGCAGCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGCAGGGGCCCTGCCAGTCTCTTACTCACTCACCGGCAGCCTAC  850

seq1  GCCCAGCAGGAAGCAGGTGAGTGCCAGCAGGTCACATT-GGTTCCAGGTA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCCAGCAGGAAGCAGGTGAGTGCCAGCAGGTCACATTGGGTTCCAGGTA  900

seq1  TCTGAGAGGTAGAGGTGCAGCCGATGG-CGCAGGGGAGCTCTGTCCGGAC  948
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TCTGAGAGGTAGAGGTGCAGCCGATGGCCGCA-GGGAGCTCTGTCCGGAC  949

seq1  CACGT-CCCCCACTGGCCAGGCTACCCCAGCCACCACCCAGGCCCTGGCG  997
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  CACGTCCCCCCACTGGCCAGGCTACCCCAGCCACAACCCAGGCCCTGGCG  999

seq1  CAGCTCCTCGCACAGCAACGTGAAGGCCCAGAAGTACAGCAGCAGCTCGG  1047
      ||||||||||||||||||||||||||||||  ||||||||||||||||| 
seq2  CAGCTCCTCGCACAGCAACGTGAAGGCCCAAGAGTACAGCAGCAGCTCGA  1049

seq1  AGACACTTGGCTTTGTGGGCTGGAAATCCACCAGCAACACG-TGGGCAAA  1096
        ||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  GAACACTTGGCTTTGTGGGCTG--AATCCACCAGCAACACGTTGGGCAAA  1097

seq1  CAGCAGCAGGAACAGCAGGTAACTG-ACCACATTACCCAGGAAGGCAGTC  1145
      |||||||| |||||||| ||||||| || |||||  ||||||||||||||
seq2  CAGCAGCA-GAACAGCA-GTAACTGAACTACATTTACCAGGAAGGCAGTC  1145

seq1  ACTGGGG-  1152
      ||| ||| 
seq2  ACTTGGGG  1153