BAC Information

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BAC

Clone NameB6Ng01-257J24
Chromosome7 (Build37)
Map Location 122,931,284 - 123,066,757
singlet/doubletdoublet
Overlap geneSox6, LOC100042779
Upstream geneInsc, EG627967, LOC668472
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257J24.bB6Ng01-257J24.g
ACCGA063275GA063276
length2931,144
definitionB6Ng01-257J24.b B6Ng01-257J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,931,284 - 122,931,576)(123,065,607 - 123,066,757)
sequence
cataaattcattgtttttaatagctgagtagtactccattgtgtaaatgt
accacatattctgtatccatccctctgttgaggggcatctgggttctttc
cagcttttggctattataaataaggctgctatgaacagagtggagcatgt
gtccttattacatgttggaacgtcttctgaaacccaaaagttttctaaac
tacctcattatcatgacatataagtggaagtttgtgtatacacagaaaaa
agagggggagttaggaaaggagggacagaggagaggagggagg
gaattcaaggtcagcctgagaaaaaccttgtaaatagttcaagtacaata
tatgtgtttgtaactgatattcccatttattaatcctgcctatatttatg
gtgaattgctttgggctcttgcactgttttgtggtgtgtcactaagaaat
aggtaatgtgcatatcagagtttctcacatattctcttttacttgtactt
agagctactagaattgttaactaaactttatacacaaattactaccataa
ttcagtattttcaggaatttttaaagtagaggatctatctattgagttaa
gaagagaaaatacgaagatctgacatattaaaatttcccaagcatttatc
ccattttcattcatctttaatttattttgtgagtgaaataagttttgggt
ttaattttcatcattgaatgatatgatattaggctgaaaataatatttag
aaaccctgacattccaaagcaattatcttttaatcctcaattagcttaaa
aataccatggccaatgtgaacttgcccatgaaccgttatgtacatctggg
aactttaacgtggttctagcgtgaccaatctagaaagcagatatcctagc
ttcttccccacagagaaggtgcagcactttttcattgaattgatttgtgt
ttgtctgagagaacaatggataaataatgattagcacccagctctgggag
ctgccttcccactgtctcctgaatctttgcattgactacatgaatcagag
gtaccaaacttactgctggtcttctgccaaatgtagacctgctttagaca
tctgtctgcttgcttgtcaactgctgtctgtcagccggcaagcacccgtc
ttcccaagctgctgaatttcagcctggatctttacatttcctcggtcttc
tctgatggcatcttcccttggtaagaccctccttaatttagctccagatg
tgccaccaggatgcttgtaaacatcttgcacacagcaatttttgtgattt
ctgaaatctctccataggtcaagaacccaaagcaggcacaactcagtgat
atgagttgtttgggaggtgctgtgataccagcatcacagttccccttgac
aaggtggtgcaagcagtgtgcaagatacctgtagtcctctcgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122931284_122931576
seq2: B6Ng01-257J24.b_49_341

seq1  CATAAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGT  50

seq1  ACCACATATTCTGTATCCATCCCTCTGTTGAGGGGCATCTGGGTTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATATTCTGTATCCATCCCTCTGTTGAGGGGCATCTGGGTTCTTTC  100

seq1  CAGCTTTTGGCTATTATAAATAAGGCTGCTATGAACAGAGTGGAGCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTGGCTATTATAAATAAGGCTGCTATGAACAGAGTGGAGCATGT  150

seq1  GTCCTTATTACATGTTGGAACGTCTTCTGAAACCCAAAAGTTTTCTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATTACATGTTGGAACGTCTTCTGAAACCCAAAAGTTTTCTAAAC  200

seq1  TACCTCATTATCATGACATATAAGTGGAAGTTTGTGTATACACAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATTATCATGACATATAAGTGGAAGTTTGTGTATACACAGAAAAA  250

seq1  AGAGGGGGAGTTAGGAAAGGAGGGACAGAGGAGAGGAGGGAGG  293
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGAGTTAGGAAAGGAGGGACAGAGGAGAGGAGGGAGG  293

seq1: chr7_123065607_123066757
seq2: B6Ng01-257J24.g_66_1209 (reverse)

seq1  AACGAGAGGACTACAGTTATCTT-CCCACTTGCCTGCACCACTTTGTCCA  49
      |||||||||||||||| |||||| | ||| ||| |||||||| ||||| |
seq2  AACGAGAGGACTACAGGTATCTTGCACAC-TGCTTGCACCACCTTGTCAA  49

seq1  GGGGAACTGTGAATGCTGGGTATCCACAGCACCT-CCAAAC-ACTCATAT  97
      ||||||||||| ||||| ||||| |||||||||| |||||| ||||||||
seq2  GGGGAACTGTG-ATGCT-GGTAT-CACAGCACCTCCCAAACAACTCATAT  96

seq1  CAACCTGAGTTGTGCCTTGCTTTGGGTTCTTGACCTATGGAGAGATTTTC  147
      ||  |||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CA--CTGAGTTGTGCC-TGCTTTGGGTTCTTGACCTATGGAGAGA-TTTC  142

seq1  AGAAATTCACAAAAATTGCTGTGTTGCAAGATGTTTACAAGCATCCTGGT  197
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAAA-TCACAAAAATTGCTGTG-TGCAAGATGTTTACAAGCATCCTGGT  190

seq1  GGCACATCTGGAGCTAAATTAAGGAGGGTCTTACCAA-GGAAGATGCCAT  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCACATCTGGAGCTAAATTAAGGAGGGTCTTACCAAGGGAAGATGCCAT  240

seq1  CAGAGAAGACCGAGGAAATGTAAAGATCCAGGCTGAAATTCAGCAGCTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGACCGAGGAAATGTAAAGATCCAGGCTGAAATTCAGCAGCTTG  290

seq1  GGAAGACGGGTGCTTGCCGGCCTGACAGACAGCAGTTGACAAGCAAGCAG  346
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAGACGGGTGCTTGCCGG-CTGACAGACAGCAGTTGACAAGCAAGCAG  339

seq1  ACAGATGTCTAAAGCAGGTCTACATTTGGCAGAAGACCAGCAGTAAGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTCTAAAGCAGGTCTACATTTGGCAGAAGACCAGCAGTAAGTTT  389

seq1  GGTACCTCTGATTCATGTAGTCAATGCAAAGATTCAGGAGACAGTGGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTCTGATTCATGTAGTCAATGCAAAGATTCAGGAGACAGTGGGAA  439

seq1  GGCAGCTCCCAGAGCTGGGTGCTAATCATTATTTATCCATTGTTCTCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCCCAGAGCTGGGTGCTAATCATTATTTATCCATTGTTCTCTCA  489

seq1  GACAAACACAAATCAATTCAATGAAAAAGTGCTGCACCTTCTCTGTGGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACACAAATCAATTCAATGAAAAAGTGCTGCACCTTCTCTGTGGGG  539

seq1  AAGAAGCTAGGATATCTGCTTTCTAGATTGGTCACGCTAGAACCACGTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTAGGATATCTGCTTTCTAGATTGGTCACGCTAGAACCACGTTA  589

seq1  AAGTTCCCAGATGTACATAACGGTTCATGGGCAAGTTCACATTGGCCATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCAGATGTACATAACGGTTCATGGGCAAGTTCACATTGGCCATG  639

seq1  GTATTTTTAAGCTAATTGAGGATTAAAAGATAATTGCTTTGGAATGTCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTAAGCTAATTGAGGATTAAAAGATAATTGCTTTGGAATGTCAG  689

seq1  GGTTTCTAAATATTATTTTCAGCCTAATATCATATCATTCAATGATGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTAAATATTATTTTCAGCCTAATATCATATCATTCAATGATGAAA  739

seq1  ATTAAACCCAAAACTTATTTCACTCACAAAATAAATTAAAGATGAATGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCCAAAACTTATTTCACTCACAAAATAAATTAAAGATGAATGAA  789

seq1  AATGGGATAAATGCTTGGGAAATTTTAATATGTCAGATCTTCGTATTTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATAAATGCTTGGGAAATTTTAATATGTCAGATCTTCGTATTTTC  839

seq1  TCTTCTTAACTCAATAGATAGATCCTCTACTTTAAAAATTCCTGAAAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTAACTCAATAGATAGATCCTCTACTTTAAAAATTCCTGAAAATA  889

seq1  CTGAATTATGGTAGTAATTTGTGTATAAAGTTTAGTTAACAATTCTAGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTATGGTAGTAATTTGTGTATAAAGTTTAGTTAACAATTCTAGTA  939

seq1  GCTCTAAGTACAAGTAAAAGAGAATATGTGAGAAACTCTGATATGCACAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGTACAAGTAAAAGAGAATATGTGAGAAACTCTGATATGCACAT  989

seq1  TACCTATTTCTTAGTGACACACCACAAAACAGTGCAAGAGCCCAAAGCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTTCTTAGTGACACACCACAAAACAGTGCAAGAGCCCAAAGCAA  1039

seq1  TTCACCATAAATATAGGCAGGATTAATAAATGGGAATATCAGTTACAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCATAAATATAGGCAGGATTAATAAATGGGAATATCAGTTACAAAC  1089

seq1  ACATATATTGTACTTGAACTATTTACAAGGTTTTTCTCAGGCTGACCTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTGTACTTGAACTATTTACAAGGTTTTTCTCAGGCTGACCTTG  1139

seq1  AATTC  1151
      |||||
seq2  AATTC  1144