BAC Information

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BAC

Clone NameB6Ng01-258H11
Chromosome7 (Build37)
Map Location 19,554,565 - 19,718,478
singlet/doubletdoublet
Overlap geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46
Upstream geneCeacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2
Downstream geneQpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258H11.bB6Ng01-258H11.g
ACCGA063898GA063899
length1,2021,156
definitionB6Ng01-258H11.b B6Ng01-258H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,717,283 - 19,718,478)(19,554,565 - 19,555,692)
sequence
gaattctcacccaaacctcctaccctcatttccagtaccttaatgtccca
ccaaatgtccagactttttcaaattctcctttaaaaactcaatctcctcc
cccacagcctggtggaacatgcctgtagtcccagcacttgggaggatatg
acatcagacaggaggctaaggagttccagaccctgtcgaaacaaaccaac
caacccaaagtggtgcacaccttcaattccagcacttgggaggtagaagc
tagtggatctctgtgagcttaaggccagcctgttctatatatctagtcct
aggccaactagtgctaccgagagaccttgtctcataaataaataaaataa
gactagagggctgaagagatggctcagcagttaaaagcacttgttgctct
tatagagggcccaagtttggttcccagcacccacagggaggctctctata
actccagttccagaagatctggtttccaacagcaccaggtacgtatgtga
tgcatacacatgcatgcaaaacaaccatatacattaaaattaaaaaaaaa
aatagccgggcggtggtggcgcacacctttaatcccagcactcaggaggc
agaggcaggcggatttctaaattcgaggccagcctggtctacaaagtgag
ttccaggacagccagggctacacagagaaaccctgtctcgaaaaacaaaa
caaaacaaaccagtatgttgtccagcacagaaaagtccaaccatcaataa
ctttccatatatctgaagacatacaaaatacctgaatctcaagtatttga
gatcacaagtgactcagtgggccttagctcattccagacaccaatcctga
ctctctaccccttcattcccccgaagttcaggaacctttgaaagaaccca
gacataataaaaccctatttaaaacgaatcccaaaccaaatacatttcaa
tagcccccagtgctaccagggagaggtacaatagcagacatggtgtcccg
aatcccgcagctgtttgcaggatggagccatgaaagggaaagtgtcctcc
tgcccttggtgacaaggtaggaagtattcaagcccaaggatcctgggccc
ggaaatattctcatctggtgcccacatacacctccaggccacaggccacc
aaaggccactcataaattgcatcaaggccttcccatcaaaataagcgtga
ac
gaattcaaagcactcaggggatctgacaccttttggcctccacagcacca
aatgtgaagacttcagtccagatccccagcacccatgtacattccaggca
ggaagggggaacctacctgtgatcctgcacttgagagatggaggtgggac
tgctcgggtaaaagagctagctagactagccagattggtgagctcaaggt
tcacccagagactctgccttagcaatccaggatacctgccgttgacttct
gatgaccacagatacgcataaatagatagacacatccatacacaaacgca
aaggagaaaaagtacaggagggagggcaggtggtctccctggtctgaggt
tataggtatgagaccccagacctagctggttttcctttggaaggaagaaa
gagggtgtcaaagactgaaggaagggatacagagtggggagaaggaaaga
tggagggaggagggacacagctatgaagtggagataaataaacacatgga
aggacatcgggatgtctggtggtgaagctagagatgcttcccccaaagcc
agaatttgatccctttaaaggaggaaacagactccatagagtttgtcagc
tgacctccacgtgtacactgtgacacgcatgcgcacacacatacacacac
acacacatgaacacacgtaatttattcaaacacaatgcacacacccatat
gcaatacatacatacacacaatgtatacacacacaatgcacacatacaca
ccatgcagtgcacacacatgatgcacacatacaataaataataaatacat
tttttggaaaaagatgagatctagagtcaagatccctggttgcagataga
cttagaaatcaagagggaggctagacgtatgtccaaaggtcagggctaaa
ttttgattgaagactggactaagagtagagccagggtcaagggtcaagtt
gaaatgatggttcagggccttgggcttacgtttcagccttagggttatag
cttaggtttagggtccattcagattagagttggaaatggaaggagctggg
agaagtgcttcagccatttaagagcaactggctgccttcttccagagtcc
caagtttcatttccccagcacctaacattggtgggctgagagtctcatca
gatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19717283_19718478
seq2: B6Ng01-258H11.b_45_1246 (reverse)

seq1  GTTCACG-TTATTTTGTAATGTGGAAGGCTTGGTTGCATTTTATGAGTGG  49
      ||||||| ||||||||  ||| ||||||| | | |||| |||||||||||
seq2  GTTCACGCTTATTTTG--ATG-GGAAGGCCTTGATGCAATTTATGAGTGG  47

seq1  CCTTT-GTGG-CTGTGG-CTGGGGGTGTATGGTGGGCACAAGATGAGAAT  96
      ||||| |||| |||||| |||| ||||||| |||||||| ||||||||||
seq2  CCTTTGGTGGCCTGTGGCCTGGAGGTGTAT-GTGGGCACCAGATGAGAAT  96

seq1  ATTT-CGGGGCCAGAATCCTTGGGCTTGAATACTTCCTACCTTTGTCACC  145
      |||| |||| |||| |||||||||||||||||||||||||| ||||||||
seq2  ATTTCCGGGCCCAGGATCCTTGGGCTTGAATACTTCCTACC-TTGTCACC  145

seq1  AAGGGCAGGAGGACACTTT-CCTTTCATGGCT-CAT-CTGCAAACAGCTG  192
      ||||||||||||||||||| |||||||||||| ||| |||||||||||||
seq2  AAGGGCAGGAGGACACTTTCCCTTTCATGGCTCCATCCTGCAAACAGCTG  195

seq1  CGGGATTCGGGACA-CATGTCTGCTATTGTACCTCT-CCTGGTAGCACTG  240
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CGGGATTCGGGACACCATGTCTGCTATTGTACCTCTCCCTGGTAGCACTG  245

seq1  GGGGCTATTGAAATGTATTTGGTTTGGGATTCGTTTTAAATAGGGTTTTA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATTGAAATGTATTTGGTTTGGGATTCGTTTTAAATAGGGTTTTA  295

seq1  TTATGTCTGGGTTCTTTC-AAGGTTCCTGAACTTCGGGGGAATGAAGGGG  339
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTATGTCTGGGTTCTTTCAAAGGTTCCTGAACTTCGGGGGAATGAAGGGG  345

seq1  TAGAGAGTCAGGATTGGTGTCTGGAATGAGCTAAGGCCCACTGAGTCACT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTCAGGATTGGTGTCTGGAATGAGCTAAGGCCCACTGAGTCACT  395

seq1  TGTGATCTCAAATACTTGAGATTCAGGTATTTTGTATGTCTTCAGATATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTCAAATACTTGAGATTCAGGTATTTTGTATGTCTTCAGATATA  445

seq1  TGGAAAGTTATTGATGGTTGGACTTTTCTGTGCTGGACAACATACTGGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTATTGATGGTTGGACTTTTCTGTGCTGGACAACATACTGGTT  495

seq1  TGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  545

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAATTTAGAAATCCGCC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAATTTAGAAATCCGCC  595

seq1  TGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCC  645

seq1  GGCTATTTTTTTTTTTAATTTTAATGTATATGGTTGTTTTGCATGCATGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTTTTTTTTTAATTTTAATGTATATGGTTGTTTTGCATGCATGT  695

seq1  GTATGCATCACATACGTACCTGGTGCTGTTGGAAACCAGATCTTCTGGAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATCACATACGTACCTGGTGCTGTTGGAAACCAGATCTTCTGGAA  745

seq1  CTGGAGTTATAGAGAGCCTCCCTGTGGGTGCTGGGAACCAAACTTGGGCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTATAGAGAGCCTCCCTGTGGGTGCTGGGAACCAAACTTGGGCC  795

seq1  CTCTATAAGAGCAACAAGTGCTTTTAACTGCTGAGCCATCTCTTCAGCCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAGAGCAACAAGTGCTTTTAACTGCTGAGCCATCTCTTCAGCCC  845

seq1  TCTAGTCTTATTTTATTTATTTATGAGACAAGGTCTCTCGGTAGCACTAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTTATTTTATTTATTTATGAGACAAGGTCTCTCGGTAGCACTAG  895

seq1  TTGGCCTAGGACTAGATATATAGAACAGGCTGGCCTTAAGCTCACAGAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAGGACTAGATATATAGAACAGGCTGGCCTTAAGCTCACAGAGA  945

seq1  TCCACTAGCTTCTACCTCCCAAGTGCTGGAATTGAAGGTGTGCACCACTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGCTTCTACCTCCCAAGTGCTGGAATTGAAGGTGTGCACCACTT  995

seq1  TGGGTTGGTTGGTTTGTTTCGACAGGGTCTGGAACTCCTTAGCCTCCTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGTTGGTTTGTTTCGACAGGGTCTGGAACTCCTTAGCCTCCTGT  1045

seq1  CTGATGTCATATCCTCCCAAGTGCTGGGACTACAGGCATGTTCCACCAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCATATCCTCCCAAGTGCTGGGACTACAGGCATGTTCCACCAGG  1095

seq1  CTGTGGGGGAGGAGATTGAGTTTTTAAAGGAGAATTTGAAAAAGTCTGGA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGGAGGAGATTGAGTTTTTAAAGGAGAATTTGAAAAAGTCTGGA  1145

seq1  CATTTGGTGGGACATTAAGGTACTGGAAATGAGGGTAGGAGGTTTGGGTG  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTGGGACATTAAGGTACTGGAAATGAGGGTAGGAGGTTTGGGTG  1195

seq1  AGAATTC  1196
      |||||||
seq2  AGAATTC  1202

seq1: chr7_19554565_19555692
seq2: B6Ng01-258H11.g_69_1224

seq1  GAATTCAAAGCACTCAGGGGATCTGACACCTTTTGGCCTCCACAGCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCACTCAGGGGATCTGACACCTTTTGGCCTCCACAGCACCA  50

seq1  AATGTGAAGACTTCAGTCCAGATCCCCAGCACCCATGTACATTCCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAGACTTCAGTCCAGATCCCCAGCACCCATGTACATTCCAGGCA  100

seq1  GGAAGGGGGAACCTACCTGTGATCCTGCACTTGAGAGATGGAGGTGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGGAACCTACCTGTGATCCTGCACTTGAGAGATGGAGGTGGGAC  150

seq1  TGCTCGGGTAAAAGAGCTAGCTAGACTAGCCAGATTGGTGAGCTCAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGGGTAAAAGAGCTAGCTAGACTAGCCAGATTGGTGAGCTCAAGGT  200

seq1  TCACCCAGAGACTCTGCCTTAGCAATCCAGGATACCTGCCGTTGACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGAGACTCTGCCTTAGCAATCCAGGATACCTGCCGTTGACTTCT  250

seq1  GATGACCACAGATACGCATAAATAGATAGACACATCCATACACAAACGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCACAGATACGCATAAATAGATAGACACATCCATACACAAACGCA  300

seq1  AAGGAGAAAAAGTACAGGAGGGAGGGCAGGTGGTCTCCCTGGTCTGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAAAGTACAGGAGGGAGGGCAGGTGGTCTCCCTGGTCTGAGGT  350

seq1  TATAGGTATGAGACCCCAGACCTAGCTGGTTTTCCTTTGGAAGGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTATGAGACCCCAGACCTAGCTGGTTTTCCTTTGGAAGGAAGAAA  400

seq1  GAGGGTGTCAAAGACTGAAGGAAGGGATACAGAGTGGGGAGAAGGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTCAAAGACTGAAGGAAGGGATACAGAGTGGGGAGAAGGAAAGA  450

seq1  TGGAGGGAGGAGGGACACAGCTATGAAGTGGAGATAAATAAACACATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAGGAGGGACACAGCTATGAAGTGGAGATAAATAAACACATGGA  500

seq1  AGGACATCGGGATGTCTGGTGGTGAAGCTAGAGATGCTTCCCCCAAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCGGGATGTCTGGTGGTGAAGCTAGAGATGCTTCCCCCAAAGCC  550

seq1  AGAATTTGATCCCTTTAAAGGAGGAAACAGACTCCATAGAG-TTGTCAGC  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAATTTGATCCCTTTAAAGGAGGAAACAGACTCCATAGAGTTTGTCAGC  600

seq1  TGACCTCCACGTGTACACTGTGACACGCATGCGCACACACATACACACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCACGTGTACACTGTGACACGCATGCGCACACACATACACACAC  650

seq1  ACACACATGAACACACGTAATTTATTCAAACACAATGCACACACCCATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGAACACACGTAATTTATTCAAACACAATGCACACACCCATAT  700

seq1  GCAATACATACATACACACAATGTATACACACACAATGCACACATACACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACATACATACACACAATGTATACACACACAATGCACACATACACA  750

seq1  CCATGCAGTGCACACACATGATGCACACATACAAT-AATAATAAATACAT  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATGCAGTGCACACACATGATGCACACATACAATAAATAATAAATACAT  800

seq1  TTTTTGGAAAAAGATGAGATCTAGAGTCAAGAT-CCTGGTTGCAGATAGA  847
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTTGGAAAAAGATGAGATCTAGAGTCAAGATCCCTGGTTGCAGATAGA  850

seq1  CTTAG-AATCAAGAGGGAGGCTAGACGTATGTCC-AAGGTCAGGGCTAAA  895
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTAGAAATCAAGAGGGAGGCTAGACGTATGTCCAAAGGTCAGGGCTAAA  900

seq1  TTTTGATTGAAGACTGGACTAAGAGTAGAGCCAGGGTCAA-GGTCAAGTT  944
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTGATTGAAGACTGGACTAAGAGTAGAGCCAGGGTCAAGGGTCAAGTT  950

seq1  GAAATGATGG-TCAGGGCCTT-GGTTAAGGTTTCAG-CTTAGGG-TATAG  990
      |||||||||| |||||||||| || | | ||||||| ||||||| |||||
seq2  GAAATGATGGTTCAGGGCCTTGGGCTTACGTTTCAGCCTTAGGGTTATAG  1000

seq1  C-TAGGTT--AGGTCCA-TCAGATAAGAGTTGG-AATGG-AGGAGCT-GG  1033
      | ||||||   |||||| |||||| |||||||| ||||| ||||||| ||
seq2  CTTAGGTTTAGGGTCCATTCAGATTAGAGTTGGAAATGGAAGGAGCTGGG  1050

seq1  AGAGGTGGCTCAGCCA-TTAAGAGC-ACTGGCTGC--TCTTCCAGAGGTC  1079
      ||| |||  ||||||| |||||||| |||||||||  ||||||||| |||
seq2  AGAAGTGCTTCAGCCATTTAAGAGCAACTGGCTGCCTTCTTCCAGA-GTC  1099

seq1  CCAAGTTCAATT--CCCAGCACCT-ACATAG--TGGCTGAGAG--CCATC  1122
      |||||||  |||  |||||||||| |||| |   |||||||||   ||||
seq2  CCAAGTTTCATTTCCCCAGCACCTAACATTGGTGGGCTGAGAGTCTCATC  1149

seq1  AG-TAGC  1128
      || ||||
seq2  AGATAGC  1156