BAC Information

Click to search

BAC

Clone NameB6Ng01-258M12
Chromosome7 (Build37)
Map Location 138,759,274 - 139,016,581
singlet/doubletdoublet
Overlap geneLOC100043679
Upstream geneTacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073
Downstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258M12.bB6Ng01-258M12.g
ACCGA064130GA064131
length1,0991,117
definitionB6Ng01-258M12.b B6Ng01-258M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,015,488 - 139,016,581)(138,759,274 - 138,760,400)
sequence
gaattcttcctttcctaaggcttaccatgtctcttttgtgcagctcgaaa
tcctttaggaccagtgttaggagaaatcaatagcaatcaatctttctttc
tttattcttcaatgatgctcttccatagcccaggctgctcttgagctccc
aactccctatgtagctgaaggtgaccttgaactcctgatactcatgcttc
cattctttgggtgctgggtttacaggtgtgtgccaccatacttcagaaac
accagaactgtttcttggggcttgggggaggtgttggattcataaatcct
cacaaagtcatgtgacatatactgatgtgtttttcctaagtctatcccat
tcacagccccagatccgtaaagcctcaaccaactagacctgctctcccgc
catgagcaaatcaagataggaggctctgggtggatgagtgaagacatttt
ggcttcttaaaagaaacctccagcctacgctgggattttgaagctctgag
caggagctgtgaagggcaagttctgagcactgagctaagtatttttcacg
ttgccagtgggacaaaaatgcctgatactagacttaaactatttatctca
gctcgtgttttcagaaatgccagtccatgatcacttggccacatggccca
tagcttctgttcaggtagaacatcatagcaggatgttcaagagaacaggg
tgcagagagagaatatgcctccttcaaaggcatacctcaatgactacttc
ctccaactgtaacccacctctgggcttttactgcctctcaataatgccgc
catcaaatcacgaatttgtcaagggatgactccattgatgttaacatcct
cgtgatccaacagcaccaccggcccggtgttcaagctctcaacgctgtag
ggaatgcttcctttccaagtcacaaccataacaaggtgtgattcatgtaa
atctgcctaagctcctggtaaacaagctggtgaagggagacaggcagtgt
tggagatgggcagttcatgattgttagatggaacaaatgactcttgtggc
aaggctgggaaatccacagagtctggggtacagttcgaggctggtctgc
gaattcttttcatttttttctttcccctctttccagtcatatttcctgcc
tccataacacatgcgcgtgcactcacacacacacacacacacacacacac
acacacacacacacacacgtgtgtgtgtggtactgtgcttggcctgaatt
catgtttctgaattcatgttttcacttcttttatctgtttatttgaatcc
tcttttggtttattgatcttttgatcttttttcctccctccctccctctc
tccctcccttcttcctctctctctctctctctctctctctttctctttct
ttcttttgagagtgtctcaccatgtattcctggatggcctagaactctct
atgtggaccagactgacctctaattcactcagaatcacctacctctgctt
ctttagcacagggattaaaggtgtgcagtgccacacatggctcatcggcc
actttaaaaactagactttggaacttttttgtgtgtgatgctttatccat
ttaggcatctttggatccagctgttgtggcactgcaagcttttggagcaa
catctgttttcatatttcctagtttctgcacagcactgtgcatatctcag
atgttgttctagattggcaaagacacgtaaaagctctgaggtttatagct
tctttctttctctttgctcaaataatttcaggtcttggattaaagacaga
agaccataatttgcatacatctacctatttaatgagcacatagctggtgg
cagatgttataagaagggcagtgggtacaacttgacaagactggagtctt
tctccagggcactaatcggggattcacacaagcactaccactactgatga
gaggagagggacaggcttaaacagagccacatgggaatgaggtgcagaga
ggcaaggaactgaatgaagtgtggtgcacttactttcttcgtgtcctgag
ggtccagctcagagctgagccaagggagatatgtggatctggtgggatta
gtgatctccaggagagcaggtcacttctgtctctgcacacatgtacccag
agctgggcaggcactcagtgagaaagccagcgattcttatgaccgaatac
taatcttagagaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139015488_139016581
seq2: B6Ng01-258M12.b_47_1145 (reverse)

seq1  GCAGA-CAGCCTCCGAACTGTACCCCAGACTCTGT-GATTT-CCAGCC-T  46
      ||||| |||||| |||||||||||||||||||||| ||||| |||||| |
seq2  GCAGACCAGCCT-CGAACTGTACCCCAGACTCTGTGGATTTCCCAGCCTT  49

seq1  GCCAC-AGAGTCATTTTGTTCCATCTTACAATCATGAACTGCCCATCCTC  95
      ||||| ||||||| |||||||||||| ||||||||||||||||||||  |
seq2  GCCACAAGAGTCA-TTTGTTCCATCTAACAATCATGAACTGCCCATCTCC  98

seq1  CACACTGCCTGTCT-CCTTCACCAGCTTGTTTACCAGGAGCTTAGGCAGA  144
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACACTGCCTGTCTCCCTTCACCAGCTTGTTTACCAGGAGCTTAGGCAGA  148

seq1  TTTACATGAATCACACCTTGTTATGGTTGTGACTTGGAAAGGAAGCATTC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGAATCACACCTTGTTATGGTTGTGACTTGGAAAGGAAGCATTC  198

seq1  CCTACAGCGTTGAGAGCTTGAACACC-GGCCGGTGGTGCTGTTGGATCAC  243
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTACAGCGTTGAGAGCTTGAACACCGGGCCGGTGGTGCTGTTGGATCAC  248

seq1  GAGGATGTTAACATCAATGGAGTCATCCCTTGACAAATTCGTGATTTGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTTAACATCAATGGAGTCATCCCTTGACAAATTCGTGATTTGAT  298

seq1  GGCGGCATTATTGAGAGGCAGTAAAAGCCCAGAGGTGGGTTACAGTTGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCATTATTGAGAGGCAGTAAAAGCCCAGAGGTGGGTTACAGTTGGA  348

seq1  GGAAGTAGTCATTGAGGTATGCCTTTGAAGGAGGCATATTCTCTCTCTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGTCATTGAGGTATGCCTTTGAAGGAGGCATATTCTCTCTCTGC  398

seq1  ACCCTGTTCTCTTGAACATCCTGCTATGATGTTCTACCTGAACAGAAGCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTCTCTTGAACATCCTGCTATGATGTTCTACCTGAACAGAAGCT  448

seq1  ATGGGCCATGTGGCCAAGTGATCATGGACTGGCATTTCTGAAAACACGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATGTGGCCAAGTGATCATGGACTGGCATTTCTGAAAACACGAG  498

seq1  CTGAGATAAATAGTTTAAGTCTAGTATCAGGCATTTTTGTCCCACTGGCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAAATAGTTTAAGTCTAGTATCAGGCATTTTTGTCCCACTGGCA  548

seq1  ACGTGAAAAATACTTAGCTCAGTGCTCAGAACTTGCCCTTCACAGCTCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAAAATACTTAGCTCAGTGCTCAGAACTTGCCCTTCACAGCTCCT  598

seq1  GCTCAGAGCTTCAAAATCCCAGCGTAGGCTGGAGGTTTCTTTTAAGAAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCTTCAAAATCCCAGCGTAGGCTGGAGGTTTCTTTTAAGAAGC  648

seq1  CAAAATGTCTTCACTCATCCACCCAGAGCCTCCTATCTTGATTTGCTCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCTTCACTCATCCACCCAGAGCCTCCTATCTTGATTTGCTCAT  698

seq1  GGCGGGAGAGCAGGTCTAGTTGGTTGAGGCTTTACGGATCTGGGGCTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGAGAGCAGGTCTAGTTGGTTGAGGCTTTACGGATCTGGGGCTGTG  748

seq1  AATGGGATAGACTTAGGAAAAACACATCAGTATATGTCACATGACTTTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATAGACTTAGGAAAAACACATCAGTATATGTCACATGACTTTGT  798

seq1  GAGGATTTATGAATCCAACACCTCCCCCAAGCCCCAAGAAACAGTTCTGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTATGAATCCAACACCTCCCCCAAGCCCCAAGAAACAGTTCTGG  848

seq1  TGTTTCTGAAGTATGGTGGCACACACCTGTAAACCCAGCACCCAAAGAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGAAGTATGGTGGCACACACCTGTAAACCCAGCACCCAAAGAAT  898

seq1  GGAAGCATGAGTATCAGGAGTTCAAGGTCACCTTCAGCTACATAGGGAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGAGTATCAGGAGTTCAAGGTCACCTTCAGCTACATAGGGAGT  948

seq1  TGGGAGCTCAAGAGCAGCCTGGGCTATGGAAGAGCATCATTGAAGAATAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTCAAGAGCAGCCTGGGCTATGGAAGAGCATCATTGAAGAATAA  998

seq1  AGAAAGAAAGATTGATTGCTATTGATTTCTCCTAACACTGGTCCTAAAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGATTGATTGCTATTGATTTCTCCTAACACTGGTCCTAAAGG  1048

seq1  ATTTCGAGCTGCACAAAAGAGACATGGTAAGCCTTAGGAAAGGAAGAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAGCTGCACAAAAGAGACATGGTAAGCCTTAGGAAAGGAAGAATT  1098

seq1  C  1094
      |
seq2  C  1099

seq1: chr7_138759274_138760400
seq2: B6Ng01-258M12.g_68_1184

seq1  GAATTCTTTTCATTTTTTTCTTTCCCCTCTTTCCAGTCATATTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATTTTTTTCTTTCCCCTCTTTCCAGTCATATTTCCTGCC  50

seq1  TCCATAACACATGCGCGTGCACTCACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACACATGCGCGTGCACTCACACACACACACACACACACACACAC  100

seq1  ACACACACACACACACACGTGTGTGTGTGGTACTGTGCTTGGCCTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACGTGTGTGTGTGGTACTGTGCTTGGCCTGAATT  150

seq1  CATGTTTCTGAATTCATGTTTTCACTTCTTTTATCTGTTTATTTGAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTGAATTCATGTTTTCACTTCTTTTATCTGTTTATTTGAATCC  200

seq1  TCTTTTGGTTTATTGATCTTTTGATCTTTTTTCCTCCCTCCCTCCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTTTATTGATCTTTTGATCTTTTTTCCTCCCTCCCTCCCTCTC  250

seq1  TCCCTCCCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCT  300

seq1  TTCTTTTGAGAGTGTCTCACCATGTATTCCTGGATGGCCTAGAACTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAGAGTGTCTCACCATGTATTCCTGGATGGCCTAGAACTCTCT  350

seq1  ATGTGGACCAGACTGACCTCTAATTCACTCAGAATCACCTACCTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACCAGACTGACCTCTAATTCACTCAGAATCACCTACCTCTGCTT  400

seq1  CTTTAGCACAGGGATTAAAGGTGTGCAGTGCCACACATGGCTCATCGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCACAGGGATTAAAGGTGTGCAGTGCCACACATGGCTCATCGGCC  450

seq1  ACTTTAAAAACTAGACTTTGGAACTTTTTTGTGTGTGATGCTTTATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAACTAGACTTTGGAACTTTTTTGTGTGTGATGCTTTATCCAT  500

seq1  TTAGGCATCTTTGGATCCAGCTGTTGTGGCACTGCAAGCTTTTGGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATCTTTGGATCCAGCTGTTGTGGCACTGCAAGCTTTTGGAGCAA  550

seq1  CATCTGTTTTCATATTTCCTAGTTTCTGCACAGCACTGTGCATATCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTTCATATTTCCTAGTTTCTGCACAGCACTGTGCATATCTCAG  600

seq1  ATGTTGTTCTAGATTGGCAAAGACACGTAAAAGCTCTGAGGTTTATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTCTAGATTGGCAAAGACACGTAAAAGCTCTGAGGTTTATAGCT  650

seq1  TCTTTCTTTCTCTTTGCTCAAATAATTTCAGGTCTTGGATTAAAGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTCTTTGCTCAAATAATTTCAGGTCTTGGATTAAAGACAGA  700

seq1  AGACCATAATTTGCATACATCTACCTATTTAATGAGCACATAGCTGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAATTTGCATACATCTACCTATTTAATGAGCACATAGCTGGTGG  750

seq1  CAGATGTTATAAGAAGGGCAGTGGGTACAACTTGACAAGACTGGAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTATAAGAAGGGCAGTGGGTACAACTTGACAAGACTGGAGTCTT  800

seq1  TCTCCAGGGCACTAATCGGGGATTCACACAAGCACTACCACTACTGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGCACTAATCGGGGATTCACACAAGCACTACCACTACTGATGA  850

seq1  GAGGAGAGGGACAGGCTTAAACAGAGCCACATGGGAATGAGGTGCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGGACAGGCTTAAACAGAGCCACATGGGAATGAGGTGCAGAGA  900

seq1  GGCAAGGAACTGAATGAAGTGTGGGTGCACTTACTTTCTTCGTGTCCTGA  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCAAGGAACTGAATGAAGTGT-GGTGCACTTACTTTCTTCGTGTCCTGA  949

seq1  GGGTCCAGCTCAGAGCTGAGCCAAGGGGAGAATATGTGGATCTGGTGGGA  1000
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GGGTCCAGCTCAGAGCTGAGCCAA-GGGAG-ATATGTGGATCTGGTGGGA  997

seq1  TTAGTGATCTTCCAGGAAGAGCAGGGTTCACTTCTGTCTCTGCACACATG  1050
      ||||||||| |||||| ||||||||  |||||||||||||||||||||||
seq2  TTAGTGATC-TCCAGG-AGAGCAGG--TCACTTCTGTCTCTGCACACATG  1043

seq1  TACCAAGGAAGGGCTGTGCAGGCACACAGTGAG-AAGCCAGCGA-TCTAT  1098
      ||||     || |||| |||||||| ||||||| |||||||||| |||  
seq2  TACC----CAGAGCTGGGCAGGCACTCAGTGAGAAAGCCAGCGATTCTTA  1089

seq1  AGAACGAATACTAGATC-TAGAGAAAGAAT  1127
       || ||||||||| ||| ||||| ||||||
seq2  TGACCGAATACTA-ATCTTAGAG-AAGAAT  1117