BAC Information

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BAC

Clone NameB6Ng01-259G03
Chromosome7 (Build37)
Map Location 134,118,575 - 134,279,400
singlet/doubletdoublet
Overlap geneD830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
Upstream geneGsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2
Downstream geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G03.bB6Ng01-259G03.g
ACCGA064576GA064577
length1,1191,062
definitionB6Ng01-259G03.b B6Ng01-259G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,118,575 - 134,119,696)(134,278,348 - 134,279,400)
sequence
gaattcttcagagcaggataatttctgaaaaggaagttagaattcagtct
gcaaattcccattggtctggtgtcttccaggctgcaggctctggcttggg
aaactggtattagaaggccctagacctggaaagctgtctgtggggcctta
gggttaaggctcaaggctaaggctcaaggctcatggctcagacagggctc
cctgcctggctcttcccatctccttcacttttccattgtcgtttacctgc
cctccacctaaggaggcggcagcttgagatgacctgatgtcctttttgtc
cccactcctggcagatgtggatgccatcctcctggaaacgaagtttttgt
tagactgagaagccaacccacaccccctcagattccgcctcactccactc
ccggggccccagatttatttagtccataactatagctcaaacatcctact
gactcagttctgtccttgaaaaaattggttgttttgcctactaagttgaa
gggaggggctctcagaacaactcccttccctattccctccagagcccttc
ttcctccttttctgccaaggcacttccttaggcaagacagccaacatgca
gtccccgacccggctaattggttgaaatcttagggtactcggcaggaggg
gggacggaaagttctaaggggaccctatgatgggcctcaggggattggga
gtccgggaaagaaggttgggaagagggagagccagggaagtgctgctccg
gattgctataaagacctaaatgtttacggaagttctatggttccgttgct
aggagactagaggttctagaactaaggacaatgtcctagtgtgccatact
ggctctcctgattccttcttggaggcggtgaccccagagttatatcaagg
catttaggagatggaaaggcgttagggtggaacttgggctctaatcctcc
caccatcagggcgcgctagaagcaagcggcaggcatgctcggagcctctc
tagccacctcttcccagcctgggtcccgagagcgacgaggatcgcaagcg
tcgcgggcggggaagcgatgtggctgtactaagtcaccaatctcttgggg
gaggctcagactcgggacg
gaattctgggatcccaacaggccagaaaactccctaggatgaagctgtga
agcccatgcactcacatccttctcagcaggggccccttcaggaatgcctc
tcaactaccatttgctttggggccagcttagagcctggatggcaacatcc
agcttgctcttgggtgaactgtgacctgtgacttttcccagagcactctg
atttggggctggctggaagctgctggtgggagcctgccagagatccatca
cttctccttgggttagggatgcggagagttcctggctggtggtgtaggtg
taggtggtatagtcccgcacctactgtgtccactcagaagtatggtttgt
gtgcaagataggacaatttaggtgatggctgcaaacagtactggtgaata
tagaccatgggagaaagcagggcaggtgctggtgagttccaaaaggaggg
acccaggagctgtaccctgtctgctgaagacctaagtgtgtctgcagccc
ccagaagaatgcaaatgtgatggggactaaatgtgccatcaagtgtgcgt
tcttcagctaagctgccatatccttccctcagaggctccctcacaccagc
tctcaccacgcccacaccgtgcacacaccagtaggcacacatgcaagatc
gggagaggagtcagccaagtgcggtgactgggtggcacaaacccctggtg
ttgatgcttttctctacaggctcagttgtctgtttcctcttccaccccaa
ggctgaagtctttcccttgtcgcagggtaaataagagagagttaaatgaa
agacaggcccaaggggtgggacatggttgccagagagtccctaagggttc
tgaggtacagagaggggacaggtcacaatttgttgctgcctctgaccccg
ccagcccaggcacgtgggtccaaaggttggtgcttggaggagatgtgcaa
gaggaagctgttgagtcagagggcgctgcccttgagaacagactgaccta
cagaaagagatgtgtgcggtgcgattggttgtgacctggatgggcaaagg
ggtatggtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134118575_134119696
seq2: B6Ng01-259G03.b_49_1167

seq1  GAATTCTTCAGAGCAGGATAATTTCTGAAAAGGAAGTTAGAATTCAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAGCAGGATAATTTCTGAAAAGGAAGTTAGAATTCAGTCT  50

seq1  GCAAATTCCCATTGGTCTGGTGTCTTCCAGGCTGCAGGCTCTGGCTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCCCATTGGTCTGGTGTCTTCCAGGCTGCAGGCTCTGGCTTGGG  100

seq1  AAACTGGTATTAGAAGGCCCTAGACCTGGAAAGCTGTCTGTGGGGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTATTAGAAGGCCCTAGACCTGGAAAGCTGTCTGTGGGGCCTTA  150

seq1  GGGTTAAGGCTCAAGGCTAAGGCTCAAGGCTCATGGCTCAGACAGGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGGCTCAAGGCTAAGGCTCAAGGCTCATGGCTCAGACAGGGCTC  200

seq1  CCTGCCTGGCTCTTCCCATCTCCTTCACTTTTCCATTGTCGTTTACCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGGCTCTTCCCATCTCCTTCACTTTTCCATTGTCGTTTACCTGC  250

seq1  CCTCCACCTAAGGAGGCGGCAGCTTGAGATGACCTGATGTCCTTTTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCTAAGGAGGCGGCAGCTTGAGATGACCTGATGTCCTTTTTGTC  300

seq1  CCCACTCCTGGCAGATGTGGATGCCATCCTCCTGGAAACGAAGTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTGGCAGATGTGGATGCCATCCTCCTGGAAACGAAGTTTTTGT  350

seq1  TAGACTGAGAAGCCAACCCACACCCCCTCAGATTCCGCCTCACTCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAGAAGCCAACCCACACCCCCTCAGATTCCGCCTCACTCCACTC  400

seq1  CCGGGGCCCCAGATTTATTTAGTCCATAACTATAGCTCAAACATCCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCCCCAGATTTATTTAGTCCATAACTATAGCTCAAACATCCTACT  450

seq1  GACTCAGTTCTGTCCTTGAAAAAATTGGTTGTTTTGCCTACTAAGTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTCTGTCCTTGAAAAAATTGGTTGTTTTGCCTACTAAGTTGAA  500

seq1  GGGAGGGGCTCTCAGAACAACTCCCTTCCCTATTCCCTCCAGAGCCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCTCTCAGAACAACTCCCTTCCCTATTCCCTCCAGAGCCCTTC  550

seq1  TTCCTCCTTTTCTGCCAAGGCACTTCCTTAGGCAAGACAGCCAACATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTTTCTGCCAAGGCACTTCCTTAGGCAAGACAGCCAACATGCA  600

seq1  GTCCCCGACCCGGCTAATTGGTTGAAATCTTAGGGTACTCGGCAGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGACCCGGCTAATTGGTTGAAATCTTAGGGTACTCGGCAGGAGGG  650

seq1  GGGACGGAAAGTTCTAAGGGGACCCTATGATGGGCCTCAGGGGATTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGGAAAGTTCTAAGGGGACCCTATGATGGGCCTCAGGGGATTGGGA  700

seq1  GTCCGGGAAAGAAGGTTGGGAAGAGGGAGAGCCAGGGAAGTGCTGCTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGAAAGAAGGTTGGGAAGAGGGAGAGCCAGGGAAGTGCTGCTCCG  750

seq1  GATTGCTATAAAGACCTAAATGTTTACGGAAGTTCTATGGTTCCGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTATAAAGACCTAAATGTTTACGGAAGTTCTATGGTTCCGTTGCT  800

seq1  AGGAGACTAGAGGTTCTAGAACTAAGGACAATGTCCTAGTGTGCCATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTAGAGGTTCTAGAACTAAGGACAATGTCCTAGTGTGCCATACT  850

seq1  GGCTCTCCTGATTCCTTCTTGGAGGCGGTGACCCCAGAGTTATATCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCTGATTCCTTCTTGGAGGCGGTGACCCCAGAGTTATATCAAGG  900

seq1  CATTTAGGAGATGGAAAGGCGTTAGGGTGGAACTTGGGCTCTAATCCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGAGATGGAAAGGCGTTAGGGTGGAACTTGGGCTCTAATCCTCC  950

seq1  CACCACCAGGGCGGCGCTAGAAGCAAGCGGCAGGCATGCTCGGAGCCTCT  1000
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CACCATCAGGGC-GCGCTAGAAGCAAGCGGCAGGCATGCTCGGAGCCTCT  999

seq1  CTAGCCACCTCTTCCCAGCCTGGGTCCCGGAGAGCGACGAGGATCGCAAG  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGCCACCTCTTCCCAGCCTGGGTCCC-GAGAGCGACGAGGATCGCAAG  1048

seq1  CGTCGCGGGCGGGGAAGCGATGTGGGCTGTACTAAGTCACCCAATCTCTT  1100
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  CGTCGCGGGCGGGGAAGCGATGT-GGCTGTACTAAGTCA-CCAATCTCTT  1096

seq1  -GGGGAGGCGCAGACTCGGGACG  1122
       |||||||| |||||||||||||
seq2  GGGGGAGGCTCAGACTCGGGACG  1119

seq1: chr7_134278348_134279400
seq2: B6Ng01-259G03.g_67_1128 (reverse)

seq1  TCCCACC-TTCCCCTTT-CCCATCCAGGTCACACACAATCGCA-CGCACA  47
      ||||||| | ||||||| |||||||||||||||  |||||||| ||||||
seq2  TCCCACCATACCCCTTTGCCCATCCAGGTCACAACCAATCGCACCGCACA  50

seq1  CATCTCTTTCTGTAGGTCAGTCTGTTCTCAAGGGCAGCGCCCTCTGACTC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTTCTGTAGGTCAGTCTGTTCTCAAGGGCAGCGCCCTCTGACTC  100

seq1  AACAGCTTCCTCTTGCACATCTCCTCC-AGCAACCACCTTTGGA-CCACG  145
      ||||||||||||||||||||||||||| |||| | ||||||||| |||||
seq2  AACAGCTTCCTCTTGCACATCTCCTCCAAGCACCAACCTTTGGACCCACG  150

seq1  TGCCTGGGCTGGCGGGGTCAGAGGCAGCA--CAATTGTGACCTGTCCCCT  193
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TGCCTGGGCTGGCGGGGTCAGAGGCAGCAACAAATTGTGACCTGTCCCCT  200

seq1  CTCTGTACCTCAG-ACCCTTAGGGACTCTCTGGCAACCATGTCCCACCCC  242
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACCTCAGAACCCTTAGGGACTCTCTGGCAACCATGTCCCACCCC  250

seq1  TTGGGCCTGTCTTTCATTTAACTCTCTCTTA-TTACCCTGCGACAAGGGA  291
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGGGCCTGTCTTTCATTTAACTCTCTCTTATTTACCCTGCGACAAGGGA  300

seq1  AAGACTTCAGCCTTGGGGTGGAAGAGGAAACAGACAACTGAGCCTGTAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCAGCCTTGGGGTGGAAGAGGAAACAGACAACTGAGCCTGTAGA  350

seq1  GAAAAGCATCAACACCAGGGGTTTGTGCCACCCAGTCACCGCACTTGGCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCATCAACACCAGGGGTTTGTGCCACCCAGTCACCGCACTTGGCT  400

seq1  GACTCCTCTCCCGATCTTGCATGTGTGCCTACTGGTGTGTGCACGGTGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCTCCCGATCTTGCATGTGTGCCTACTGGTGTGTGCACGGTGTG  450

seq1  GGCGTGGTGAGAGCTGGTGTGAGGGAGCCTCTGAGGGAAGGATATGGCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGAGAGCTGGTGTGAGGGAGCCTCTGAGGGAAGGATATGGCAG  500

seq1  CTTAGCTGAAGAACGCACACTTGATGGCACATTTAGTCCCCATCACATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGAAGAACGCACACTTGATGGCACATTTAGTCCCCATCACATTT  550

seq1  GCATTCTTCTGGGGGCTGCAGACACACTTAGGTCTTCAGCAGACAGGGTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTGGGGGCTGCAGACACACTTAGGTCTTCAGCAGACAGGGTA  600

seq1  CAGCTCCTGGGTCCCTCCTTTTGGAACTCACCAGCACCTGCCCTGCTTTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGGGTCCCTCCTTTTGGAACTCACCAGCACCTGCCCTGCTTTC  650

seq1  TCCCATGGTCTATATTCACCAGTACTGTTTGCAGCCATCACCTAAATTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGTCTATATTCACCAGTACTGTTTGCAGCCATCACCTAAATTGT  700

seq1  CCTATCTTGCACACAAACCATACTTCTGAGTGGACACAGTAGGTGCGGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTGCACACAAACCATACTTCTGAGTGGACACAGTAGGTGCGGGA  750

seq1  CTATACCACCTACACCTACACCACCAGCCAGGAACTCTCCGCATCCCTAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCACCTACACCTACACCACCAGCCAGGAACTCTCCGCATCCCTAA  800

seq1  CCCAAGGAGAAGTGATGGATCTCTGGCAGGCTCCCACCAGCAGCTTCCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGAAGTGATGGATCTCTGGCAGGCTCCCACCAGCAGCTTCCAG  850

seq1  CCAGCCCCAAATCAGAGTGCTCTGGGAAAAGTCACAGGTCACAGTTCACC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAAATCAGAGTGCTCTGGGAAAAGTCACAGGTCACAGTTCACC  900

seq1  CAAGAGCAAGCTGGATGTTGCCATCCAGGCTCTAAGCTGGCCCCAAAGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAAGCTGGATGTTGCCATCCAGGCTCTAAGCTGGCCCCAAAGCA  950

seq1  AATGGTAGTTGAGAGGCATTCCTGAAGGGGCCCCTGCTGAGAAGGATGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGTTGAGAGGCATTCCTGAAGGGGCCCCTGCTGAGAAGGATGTG  1000

seq1  AGTGCATGGGCTTCACAGCTTCATCCTAGGGAGTTTTCTGGCCTGTTGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGGGCTTCACAGCTTCATCCTAGGGAGTTTTCTGGCCTGTTGGG  1050

seq1  ATCCCAGAATTC  1053
      ||||||||||||
seq2  ATCCCAGAATTC  1062