BAC Information

Click to search

BAC

Clone NameB6Ng01-259G06
Chromosome7 (Build37)
Map Location 25,309,939 - 25,456,816
singlet/doubletdoublet
Overlap geneIrgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101
Upstream geneLOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428
Downstream geneGm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G06.bB6Ng01-259G06.g
ACCGA064582GA064583
length1,1691,004
definitionB6Ng01-259G06.b B6Ng01-259G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,309,939 - 25,311,082)(25,455,830 - 25,456,816)
sequence
gaattctcctgtatgggacagggacctcaaatagtggtggtttaattaag
tcagcatttctgtttccctgttacataggaacaatgctctaggaaggtaa
cagtggcctaggttcctactaactttttttgccattcttctttcttttgt
ttaaagatttatttagcttatgtataggagtacactccagacacgccaga
agagggcatcacatccaactacagatgcttgtgagccaccatgtggttgc
tggaaatcgaactgaggacctctaaagaggcagtcagtgctcttaacagc
tctccaatcttcttctttgttctttccagacagggtttttcctgtgtagc
cctggccgtcccggaactctctctgtagaccaggccggccttgagaaggc
tgggattcaaggcatgcgccaccactgcttggctgctctgccatttgtgt
tgcttttgtcttcatggtaaagattgctaggtacctatctatgtccacat
tccacttaggaggaggaaaggtaggtctctttcccagacttggggactct
cctggggaattgagtcagaactccatcataactagctataactagctgca
agggagtctggcaaagtgttgtttgttggtctcactaagatttgagagac
aggaatcattcctactacatctacttaacctgtaggcattttaaaacatt
cctcagagggtaatataggcttagtgggactcattcctagggcaatctgc
ccctattgacagtgtaagctcttcatttggcctttcaggagagagagaga
aaaaaaaaccaaaaaaaacaacaacaacaaaaaacccaaaaacaaacaaa
caaagcaacccaaactaaggtctccacaggaaagctcagtgtcagccaag
tgagacacacagcagaaggctctctgtttgattccaaaccagttctttct
acaggcccagccggccagccccgtgcttcctttctttcctcaccttcata
tgcctccctggcgggtcccccacgcaagaagccaggtcctccccaatgta
agattctttaataatggaggcatggtcttcagatacccctttccttgctg
tttgctccacactctcctcggttgtgcattattaaaaatattcctgttca
gataggtatggcactcaaa
gaattctgggtctgagagaagatggttggggacctggaaagctggtgcca
ggactccaaggtctgagggaggaggctagtgtctggtttgtcaatggggt
ctgggagaggaggactgggggtctagacttctgtgtccgagggaggaagg
ttgggagtctggaactctggaacactaaataagatgggggaaagctggcc
cccggattcctgggtctgagagaggaggcatagcgatctggaattctgag
tttgaaaaaggaaagctggagcccaggctccaggatttgaggaaggcgga
ctggggtctgaattcattgttctgagggagaaaactggctaatcgtgtct
gaaggaagaggctaaggtctagtctggccaacagtcttgctaactgtgtc
aaagggaggaggctaaggtctggtcgggctaccgggtctgagggaggagg
caagggtctgtctattgagtctgagggtgaagggctgagtttgaggccct
cagcctgtattctgaggcagagggggctggtgtgggacccctatgtctaa
ggaagaagaacgagattctcttcttctgttaggagtgctgggttctgaac
ttttgctctgacggaggacctggaatctatatttcagtatcaaggagcag
agtttgcctagacttttgagtctgaggggaataggctggctgcccagaat
catgtgtctcgttgggagggaagtagctggaactcaaaactcctgagtcc
taggaggaagaggacagtgcccttccaaattcccagtttttggtggagct
agactctaagggctaagatgctgaggccttggagaggttttttgctgtta
aggttaagtccttaaggcttaaagcataatgtcccactcctcttgtgttc
tacaagttgaataaatgacagtttgccaaagcctattgtttaactagagc
ttggtcgggttctagaagctttgggaaaactgaggtacgataatacccgt
ggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25309939_25311082
seq2: B6Ng01-259G06.b_45_1213

seq1  GAATTCTCCTGTATGGGACAGGGACCTCAAATAGTGGTGGTTTAATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTATGGGACAGGGACCTCAAATAGTGGTGGTTTAATTAAG  50

seq1  TCAGCATTTCTGTTTCCCTGTTACATAGGAACAATGCTCTAGGAAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTCTGTTTCCCTGTTACATAGGAACAATGCTCTAGGAAGGTAA  100

seq1  CAGTGGCCTAGGTTCCTACTAACTTTTTTTGCCATTCTTCTTTCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCTAGGTTCCTACTAACTTTTTTTGCCATTCTTCTTTCTTTTGT  150

seq1  TTAAAGATTTATTTAGCTTATGTATAGGAGTACACTCCAGACACGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTATTTAGCTTATGTATAGGAGTACACTCCAGACACGCCAGA  200

seq1  AGAGGGCATCACATCCAACTACAGATGCTTGTGAGCCACCATGTGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATCACATCCAACTACAGATGCTTGTGAGCCACCATGTGGTTGC  250

seq1  TGGAAATCGAACTGAGGACCTCTAAAGAGGCAGTCAGTGCTCTTAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCGAACTGAGGACCTCTAAAGAGGCAGTCAGTGCTCTTAACAGC  300

seq1  TCTCCAATCTTCTTCTTTGTTCTTTCCAGACAGGGTTTTTCCTGTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATCTTCTTCTTTGTTCTTTCCAGACAGGGTTTTTCCTGTGTAGC  350

seq1  CCTGGCCGTCCCGGAACTCTCTCTGTAGACCAGGCCGGCCTTGAGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCGTCCCGGAACTCTCTCTGTAGACCAGGCCGGCCTTGAGAAGGC  400

seq1  TGGGATTCAAGGCATGCGCCACCACTGCTTGGCTGCTCTGCCATTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCAAGGCATGCGCCACCACTGCTTGGCTGCTCTGCCATTTGTGT  450

seq1  TGCTTTTGTCTTCATGGTAAAGATTGCTAGGTACCTATCTATGTCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTCTTCATGGTAAAGATTGCTAGGTACCTATCTATGTCCACAT  500

seq1  TCCACTTAGGAGGAGGAAAGGTAGGTCTCTTTCCCAGACTTGGGGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGGAGGAGGAAAGGTAGGTCTCTTTCCCAGACTTGGGGACTCT  550

seq1  CCTGGGGAATTGAGTCAGAACTCCATCATAACTAGCTATAACTAGCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAATTGAGTCAGAACTCCATCATAACTAGCTATAACTAGCTGCA  600

seq1  AGGGAGTCTGGCAAAGTGTTGTTTGTTGGTCTCACTAAGATTTGAGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCTGGCAAAGTGTTGTTTGTTGGTCTCACTAAGATTTGAGAGAC  650

seq1  AGGAATCATTCCTACTACATCTACTTAACCTGTAGGCA-TTTAAAACATT  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGAATCATTCCTACTACATCTACTTAACCTGTAGGCATTTTAAAACATT  700

seq1  CCTCAGAGGGTAATATAGGCTTAGTGGGACTCATTCCTAGGGCAATCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGGTAATATAGGCTTAGTGGGACTCATTCCTAGGGCAATCTGC  750

seq1  CCCTATTGACAGTGTAAGCTCTTCATTTGGCCTTTCAGGAGAGAGAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGACAGTGTAAGCTCTTCATTTGGCCTTTCAGGAGAGAGAGAGA  800

seq1  AAAAAAAACCAAAAAAAACAACAACAACAAAAAA-CCAAAAACAAACAAA  848
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAAAAACCAAAAAAAACAACAACAACAAAAAACCCAAAAACAAACAAA  850

seq1  CAAAGCAA-CCAAACTAAGGTCTCCACAGGAAAGCTCAGTGTCAGCCAAG  897
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACCCAAACTAAGGTCTCCACAGGAAAGCTCAGTGTCAGCCAAG  900

seq1  TGAGACACACAGCAGAAGGCTCTCTGTTTGATTCCAAACCAGTTC-TTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAGACACACAGCAGAAGGCTCTCTGTTTGATTCCAAACCAGTTCTTTCT  950

seq1  ACAGGCCCAGCCGGCCAGCCCCGTGC-TCCCTTCTTCCC---ACTTCATA  992
      |||||||||||||||||||||||||| ||| ||||| ||    |||||||
seq2  ACAGGCCCAGCCGGCCAGCCCCGTGCTTCCTTTCTTTCCTCACCTTCATA  1000

seq1  TG-CTCCCTGGCGG--TCCCCACGC-AGAAGCCAGG-CCTCCCC-ATGT-  1035
      || |||||||||||   |||||||| |||||||||| ||||||| |||| 
seq2  TGCCTCCCTGGCGGGTCCCCCACGCAAGAAGCCAGGTCCTCCCCAATGTA  1050

seq1  AGATTCTTTAAT-ATGGAGGCATGGTCTTCAGATACCC--TTCCTTGCTG  1082
      |||||||||||| |||||||||||||||||||||||||  ||||||||| 
seq2  AGATTCTTTAATAATGGAGGCATGGTCTTCAGATACCCCTTTCCTTGCT-  1099

seq1  GTTTGCT-CACAC-CTCCTCGTTTGTGCAT--ATAAAAATA-TCCTG-TC  1126
      ||||||| ||||| ||||||| ||||||||   |||||||| ||||| ||
seq2  GTTTGCTCCACACTCTCCTCGGTTGTGCATTATTAAAAATATTCCTGTTC  1149

seq1  AG-TAGG-ATGGCACTCAAA  1144
      || |||| ||||||||||||
seq2  AGATAGGTATGGCACTCAAA  1169

seq1: chr7_25455830_25456816
seq2: B6Ng01-259G06.g_69_1072 (reverse)

seq1  GGCCACGGGT-TTATCGTGCCTCAGTTT--CCAAAGC-TCTAAGACCCGG  46
      |||||||||| ||||||| |||||||||  ||||||| ||||  ||||| 
seq2  GGCCACGGGTATTATCGTACCTCAGTTTTCCCAAAGCTTCTAGAACCCGA  50

seq1  CC-AGCTCTAGTTAAACAATAGGCTTTTGGCAACTGTC-TTTCTTCAACT  94
      || |||||||||||||||||||||||| |  ||||||| ||| |||||||
seq2  CCAAGCTCTAGTTAAACAATAGGCTTTGGCAAACTGTCATTTATTCAACT  100

seq1  TGTAG-ACACAGGA-GAGTGGG-CCTTATGCTTTAAGCCTTAGGGACTTA  141
      ||||| ||||| || ||||||| | ||||||||||||||||| |||||||
seq2  TGTAGAACACAAGAGGAGTGGGACATTATGCTTTAAGCCTTAAGGACTTA  150

seq1  ACCTTAACAGC-AAAAACCTCT-CAAGGCCTCAGCATCTTAGCCCTTAGA  189
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  ACCTTAACAGCAAAAAACCTCTCCAAGGCCTCAGCATCTTAGCCCTTAGA  200

seq1  GTCTAGCTCCACC-AAAACT-GGAATTTGG-AGGGCACTGTCCTCTTCCT  236
      ||||||||||||| |||||| ||||||||| |||||||||||||||||||
seq2  GTCTAGCTCCACCAAAAACTGGGAATTTGGAAGGGCACTGTCCTCTTCCT  250

seq1  CCTAGGACTCAGGAG-TTTGAGTTCCAGCTACTTCCCTCCCAACG-GACA  284
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CCTAGGACTCAGGAGTTTTGAGTTCCAGCTACTTCCCTCCCAACGAGACA  300

seq1  CATGATTCTGGGCAGCCAGCCTATT-CCCTCAGACTCAAAAGTCTAGGCA  333
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATGATTCTGGGCAGCCAGCCTATTCCCCTCAGACTCAAAAGTCTAGGCA  350

seq1  AACTCTGCTCCTTGATACTGAAATATAGATTCCAGGTCCTCCGTCAGAGC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCTCCTTGATACTGAAATATAGATTCCAGGTCCTCCGTCAGAGC  400

seq1  AAAAGTTCAGAACCCAGCACTCCTAACAGAAGAAGAGAATCTCGTTCTTC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAGAACCCAGCACTCCTAACAGAAGAAGAGAATCTCGTTCTTC  450

seq1  TTCCTTAGACATAGGGGTCCCACACCAGCCCCCTCTGCCTCAGAATACAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGACATAGGGGTCCCACACCAGCCCCCTCTGCCTCAGAATACAG  500

seq1  GCTGAGGGCCTCAAACTCAGCCCTTCACCCTCAGACTCAATAGACAGACC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGGCCTCAAACTCAGCCCTTCACCCTCAGACTCAATAGACAGACC  550

seq1  CTTGCCTCCTCCCTCAGACCCGGTAGCCCGACCAGACCTTAGCCTCCTCC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCCTCCCTCAGACCCGGTAGCCCGACCAGACCTTAGCCTCCTCC  600

seq1  CTTTGACACAGTTAGCAAGACTGTTGGCCAGACTAGACCTTAGCCTCTTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACACAGTTAGCAAGACTGTTGGCCAGACTAGACCTTAGCCTCTTC  650

seq1  CTTCAGACACGATTAGCCAGTTTTCTCCCTCAGAACAATGAATTCAGACC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACACGATTAGCCAGTTTTCTCCCTCAGAACAATGAATTCAGACC  700

seq1  CCAGTCCGCCTTCCTCAAATCCTGGAGCCTGGGCTCCAGCTTTCCTTTTT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCGCCTTCCTCAAATCCTGGAGCCTGGGCTCCAGCTTTCCTTTTT  750

seq1  CAAACTCAGAATTCCAGATCGCTATGCCTCCTCTCTCAGACCCAGGAATC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAATTCCAGATCGCTATGCCTCCTCTCTCAGACCCAGGAATC  800

seq1  CGGGGGCCAGCTTTCCCCCATCTTATTTAGTGTTCCAGAGTTCCAGACTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGCCAGCTTTCCCCCATCTTATTTAGTGTTCCAGAGTTCCAGACTC  850

seq1  CCAACCTTCCTCCCTCGGACACAGAAGTCTAGACCCCCAGTCCTCCTCTC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTCCTCCCTCGGACACAGAAGTCTAGACCCCCAGTCCTCCTCTC  900

seq1  CCAGACCCCATTGACAAACCAGACACTAGCCTCCTCCCTCAGACCTTGGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCCATTGACAAACCAGACACTAGCCTCCTCCCTCAGACCTTGGA  950

seq1  GTCCTGGCACCAGCTTTCCAGGTCCCCAACCATCTTCTCTCAGACCCAGA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCACCAGCTTTCCAGGTCCCCAACCATCTTCTCTCAGACCCAGA  1000

seq1  ATTC  987
      ||||
seq2  ATTC  1004