BAC Information

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BAC

Clone NameB6Ng01-260H24
Chromosome7 (Build37)
Map Location 10,752,753 - 10,753,869
singlet/doubletsinglet
Overlap geneVmn2r52
Upstream geneEG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921
Downstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260H24.bB6Ng01-260H24.g
ACCGA065407GA065408
length7911,109
definitionB6Ng01-260H24.b B6Ng01-260H24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctacctttacctcttctctttctgggatcctctcctcatctatt
atagacacttgggactatgtactttcctctgttcattgctttctttgctc
cccataaatgagtacatgttgtgtattcatttttagtgaattctcaaatg
cttttgatttctttctctttctttctctttctctttctcttcctctttct
ctcttactatttctctttctcgttctctttctctgtctcgttctctttct
ctctctcgttctttctctctccacttctctcttttctctttctttctttc
tttctttctttctttctttctttctttccttcctttctttctttccttcc
ttccttccttccttccttcctttctctctctctctctctctctctctctc
tctctctctctctctctctgtgtgtgtgtgtgtgtgtgtttttgtgtgtg
tgtctccctctctaaaaatgaatattacttccagtctctctcacattgtc
actctctctctctctctgtgtgggtgggtctacatatctgagatcatata
tgtctctctgtctgtgtgagactggtgtgtgtctctctctttttatctat
tatactcaagtttgtatgtttaaaacagaaccccgtctatctgttgtatc
tctcacccccgaaatgtgtatatttagcatgagtctgtgagagacacact
cgagtctctatctttttgtctgatggatacatatatatccccacttctct
atttgatagatatatataaaaacgtgtgtgtatgtgtgatc
gaattcttttgcagttcaacatgaatagtttataggggcttcttatactt
attcacatgcacatgtggaataaatatttggcatcaataattccagatgt
tctgaatatagaattcacagtttcaactatagtttcaaaaataaagtatt
cttggtaataaaaagtggataactatcactcaattgtctatcactacctc
gtgcttcaatcactactatttaatatataagatatgaagtaggatttcct
ggtcctttctcgcagctcagtttcatatgtctatttaccataatgtgtta
tgaaaatttttctcctattatgatgtcttaatttttgtttaatcttattt
tactttattattctcccacagaatcctgttatttcctaatgaggaacaga
aaatgtgtctgatggaaaaggctgttgggagggaaataaaagtattaact
atgatgtattgcacgtaaaactgagaattggtcatatctcagtacaagga
aagggaactgtaggtaggatatgttgtgtgagagcaacatactattttca
ataaataaaaaagaaatctcaattaaaaaaaagtctcactgttctcagac
aatgaactttctcctgtgtgttctggtttttttctcttttcggatggtta
ggtgtttttttcaagaattattctataaatatccatctcaaattttctca
aatttttattgttctcaaatgtcttttttccctcttattaaacattatag
ttttcctcatttttgtaaataaagaaatgttctcttatatttgaacacgt
ctccccaccctctgcaggcaactaaagaatgtcttcaaaaataaagcagt
gttgttgtctttgatttcatttagagaattttaacacgagtgtacaatta
taacttaaattatttgttgcttttacctggttcctgtttttgctgtattt
gaggtgtggtaatagctatttctttgcctgatgttttagtgcagtcttat
atatgttcctttgaattcttgttcatcttataaatgtggaaggggctctc
atttataaatgttcatgttgtggtgatatgattttgtaattgggttcatt
atgaacacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10752753_10753869
seq2: B6Ng01-260H24.g_63_1171

seq1  GAATTCTTTTGCAGTTCAACATGAATAGTTTATAGGGGCTTCTTATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAGTTCAACATGAATAGTTTATAGGGGCTTCTTATACTT  50

seq1  ATTCACATGCACATGTGGAATAAATATTTGGCATCAATAATTCCAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGCACATGTGGAATAAATATTTGGCATCAATAATTCCAGATGT  100

seq1  TCTGAATATAGAATTCACAGTTTCAACTATAGTTTCAAAAATAAAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATAGAATTCACAGTTTCAACTATAGTTTCAAAAATAAAGTATT  150

seq1  CTTGGTAATAAAAAGTGGATAACTATCACTCAATTGTCTATCACTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAATAAAAAGTGGATAACTATCACTCAATTGTCTATCACTACCTC  200

seq1  GTGCTTCAATCACTACTATTTAATATATAAGATATGAAGTAGGATTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCAATCACTACTATTTAATATATAAGATATGAAGTAGGATTTCCT  250

seq1  GGTCCTTTCTCGCAGCTCAGTTTCATATGTCTATTTACCATAATGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTCTCGCAGCTCAGTTTCATATGTCTATTTACCATAATGTGTTA  300

seq1  TGAAAATTTTTCTCCTATTATGATGTCTTAATTTTTGTTTAATCTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTTTCTCCTATTATGATGTCTTAATTTTTGTTTAATCTTATTT  350

seq1  TACTTTATTATTCTCCCACAGAATCCTGTTATTTCCTAATGAGGAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTATTCTCCCACAGAATCCTGTTATTTCCTAATGAGGAACAGA  400

seq1  AAATGTGTCTGATGGAAAAGGCTGTTGGGAGGGAAATAAAAGTATTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTCTGATGGAAAAGGCTGTTGGGAGGGAAATAAAAGTATTAACT  450

seq1  ATGATGTATTGCACGTAAAACTGAGAATTGGTCATATCTCAGTACAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTATTGCACGTAAAACTGAGAATTGGTCATATCTCAGTACAAGGA  500

seq1  AAGGGAACTGTAGGTAGGATATGTTGTGTGAGAGCAACATACTATTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACTGTAGGTAGGATATGTTGTGTGAGAGCAACATACTATTTTCA  550

seq1  ATAAATAAAAAAGAAATCTCAATTAAAAAAAAGTCTCACTGTTCTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAAAGAAATCTCAATTAAAAAAAAGTCTCACTGTTCTCAGAC  600

seq1  AATGAACTTTCTCCTGTGTGTTCTGGTTTTTTTCTCTTTTCGGATGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTTTCTCCTGTGTGTTCTGGTTTTTTTCTCTTTTCGGATGGTTA  650

seq1  GGTGTTTTTTTCAAGAATTATTCTATAAATATCCATCTCAAATTTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTTTCAAGAATTATTCTATAAATATCCATCTCAAATTTTCTCA  700

seq1  AATTTTTATTGTTCTCAAATGTCTTTTTTCCCTCTTATTAAACATTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTGTTCTCAAATGTCTTTTTTCCCTCTTATTAAACATTATAG  750

seq1  TTTTCCTCATTTTTGTAAATAAAGAAATGTTCTCTTATATTTGAACACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCATTTTTGTAAATAAAGAAATGTTCTCTTATATTTGAACACGT  800

seq1  CTCCCCACCCTCTGCAGGCAACTAAAGAATGTCTTCAAAAATAAAGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCTCTGCAGGCAACTAAAGAATGTCTTCAAAAATAAAGCAGT  850

seq1  GTTGTTGTCTTTGATTTCATTTAGAGAATTTTAACACGAGTGTACAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTCTTTGATTTCATTTAGAGAATTTTAACACGAGTGTACAATTA  900

seq1  TAACTTAAAATTATTTGTTGCTTTTACCTGGTTCCTGTTTTTGCTGTATT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTT-AAATTATTTGTTGCTTTTACCTGGTTCCTGTTTTTGCTGTATT  949

seq1  TGAGGTGTGGTAATAGCTATTTCTTTGCCTGATGTTTTAGTGCAGTC---  997
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TGAGGTGTGGTAATAGCTATTTCTTTGCCTGATGTTTTAGTGCAGTCTTA  999

seq1  TATATGTTCCTTTGAAATTCTGTTCATCTTAATTAAAAATGT-GAAGGGG  1046
      |||||||||||||||| |  ||||||||    ||| |||||| |||||||
seq2  TATATGTTCCTTTGAATTCTTGTTCATC----TTATAAATGTGGAAGGGG  1045

seq1  TTCTTCCATTTATTAAAATG-TCATGTTGTTGTGAATATGAATTTTTGTA  1095
       |||  |||||||  ||||| ||||||||| ||| ||||||  |||||||
seq2  CTCT--CATTTAT--AAATGTTCATGTTGTGGTG-ATATGA--TTTTGTA  1088

seq1  ATTGTGTTCATTAATGAACACG  1117
      |||| ||||||| |||||||||
seq2  ATTGGGTTCATT-ATGAACACG  1109