BAC Information

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BAC

Clone NameB6Ng01-260P20
Chromosome7 (Build37)
Map Location 49,278,400 - 49,279,246
singlet/doubletsinglet
Overlap geneEG628444
Upstream geneEG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG434174
Downstream geneEG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P20.bB6Ng01-260P20.g
ACCGA065770GA065771
length1,203852
definitionB6Ng01-260P20.b B6Ng01-260P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcctatacctaaacataataaaagcaatatgcagcagactg
gtatccaacatcaaactaaatggagagaagctggaagcaatcccactaaa
atcaggtaatagacaagggtgcccactttctccctacctattcaatatct
tacttgaagtcctaggcagagcagttctacaacaaaaggagatcaagacg
atataaattgaaaagaaagaagtcaaaatatcactatttgcatatgatag
gatagtatatataagtgaccctaaaaattccactagagaactcctaaacc
tgataaacagcttccgtgcaatagctggatataaaattaactcaaataaa
tcagtggcctttctctatacaaaggataaacaggatgagaaagaaatttc
ggaaacaacacccttcaaatattcacaaaaagtataaaatgccttgttgt
gactctaaggaagtgaaagatctgtatgacaagaacttcaagtctctgaa
gaaagaaattgaagaatttctcagaagatggaaagatctcccatgctcat
ggattggcaggattaatatagtaaaaatggctatcctgccgaaagcaatc
tacagattcaatgcaatccccatcaaaattccaactcaattcttcactga
aatagggtaattttcaaattcatctggaataacagaaaacctaggatagc
aaaaactattctcaacaataaaagaacctctgggggtatcaccatgtctg
acctcaagctgtactaaagagaaaatgtgataaaaactacatggtactgg
tatacaacagacaggtagatcaatggaatagaattgaagaccgagaaatg
aacccacacacctatggttacttggtctttgacaagggagctaaaaccat
ccagtggaaaaaagacagcattttcaagaaatggtcctggcacaactggc
agttatcatgtagaagaatggaaattgttccattcttaactccttgtaaa
agctcagtctaagttgatcaagatctctatataaacccagagaacactga
aataatagaagagaatgtggggggaaagccaggaagaattagcacaggga
aaatttctaaccgaccagccaatgagcctgtgctgttaagattcagatcg
gacaatgaacctcataaaatgcaagcttctggtagggcataagaatatcc
tgt
gaattcctgtctcaaaaaaaaaaatcatgttcctgtgccctgtgtgctcc
tgggtgtgagtccctttttggacatttattggcatgaaagtagtgaactc
atctctggttttaggagtgagagcactcctcagcctgtgtacttttggga
ggaattgagtccattgattctgagacatgttaatgaccaatgattggtga
catctattatttccatgttggtgacattagggtgtgtgtgtgtgtgttcc
ccaggaaaaattaagaaaggtgatggaggatgggcaagggagtgggactg
tgtagggggcctgggctagtactaaggccagggccactgtgttggcattg
actgctttgggcccaggtggcttccaatgatgaaaacatcaggagggaac
tctcttcccccaggaagtgatgttgtttgagtttgacagagaaggagggg
gaagaaggcaggccttttaaacctcaagttgttgagcctatctcaagctt
aggttgtaaagaggcacacttattcataatagtttctttcctgtgttgtt
tgttgtgtagcagtgaaagagtctttttggccacagaggttatcagaacc
caacagggagtcacctcagtcttaattttatttgcctagttgacgacatt
tatcttgaaatagtgtctctcattataaaatatatcagactgggcaagga
ggagtggcaaattatatatatataatatatatatacatacatacacatat
atgtacatatatgtatatatatagtggtgttttacatagcaatatgaatt
tgtagggggagacttttgtctaaagttatgtggatgttatgttttaattt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49278400_49279246
seq2: B6Ng01-260P20.g_63_914 (reverse)

seq1  AAAAAATAAAACATGACATCCACAT-ACCTTAGAC-AAAGTCT-CCCCTA  47
      ||||| |||||||| |||||||||| || |||||| ||||||| ||||||
seq2  AAAAATTAAAACATAACATCCACATAACTTTAGACAAAAGTCTCCCCCTA  50

seq1  C-AAGTCATATTGCTATGTAAAACACCACTATATATATACATATATGTAC  96
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCATATTGCTATGTAAAACACCACTATATATATACATATATGTAC  100

seq1  ATATATGTGTATGTATGTATATATATATTATATATATATAATTTGCCACT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTATGTATGTATATATATATTATATATATATAATTTGCCACT  150

seq1  CCTCCTTGCCCAGTCTGATATA-TTTATAATGAGAGACACTATTTCAAGA  195
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCCTTGCCCAGTCTGATATATTTTATAATGAGAGACACTATTTCAAGA  200

seq1  TAAATGTCGTCAACTAGGCAAATAAAATTAAGACTGAGGTGACTCCCTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCGTCAACTAGGCAAATAAAATTAAGACTGAGGTGACTCCCTGT  250

seq1  TGGGTTCTGATAACCTCTGTGGCCAAAAAGACTCTTTCACTGCTACACAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGATAACCTCTGTGGCCAAAAAGACTCTTTCACTGCTACACAA  300

seq1  CAAACAACACAGGAAAGAAACTATTATGAATAAGTGTGCCTCTTTACAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACACAGGAAAGAAACTATTATGAATAAGTGTGCCTCTTTACAAC  350

seq1  CTAAGCTTGAGATAGGCTCAACAACTTGAGGTTTAAAAGGCCTGCCTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTGAGATAGGCTCAACAACTTGAGGTTTAAAAGGCCTGCCTTCT  400

seq1  TCCCCCTCCTTCTCTGTCAAACTCAAACAACATCACTTCCTGGGGGAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCTTCTCTGTCAAACTCAAACAACATCACTTCCTGGGGGAAGA  450

seq1  GAGTTCCCTCCTGATGTTTTCATCATTGGAAGCCACCTGGGCCCAAAGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCTCCTGATGTTTTCATCATTGGAAGCCACCTGGGCCCAAAGCA  500

seq1  GTCAATGCCAACACAGTGGCCCTGGCCTTAGTACTAGCCCAGGCCCCCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGCCAACACAGTGGCCCTGGCCTTAGTACTAGCCCAGGCCCCCTA  550

seq1  CACAGTCCCACTCCCTTGCCCATCCTCCATCACCTTTCTTAATTTTTCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCCACTCCCTTGCCCATCCTCCATCACCTTTCTTAATTTTTCCT  600

seq1  GGGGAACACACACACACACACCCTAATGTCACCAACATGGAAATAATAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACACACACACACACACCCTAATGTCACCAACATGGAAATAATAGA  650

seq1  TGTCACCAATCATTGGTCATTAACATGTCTCAGAATCAATGGACTCAATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAATCATTGGTCATTAACATGTCTCAGAATCAATGGACTCAATT  700

seq1  CCTCCCAAAAGTACACAGGCTGAGGAGTGCTCTCACTCCTAAAACCAGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAAAGTACACAGGCTGAGGAGTGCTCTCACTCCTAAAACCAGAG  750

seq1  ATGAGTTCACTACTTTCATGCCAATAAATGTCCAAAAAGGGACTCACACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCACTACTTTCATGCCAATAAATGTCCAAAAAGGGACTCACACC  800

seq1  CAGGAGCACACAGGGCACAGGAACATGATTTTTTTTTTTGAGACAGGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCACACAGGGCACAGGAACATGATTTTTTTTTTTGAGACAGGAAT  850

seq1  TC  847
      ||
seq2  TC  852