BAC Information

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BAC

Clone NameB6Ng01-262C16
Chromosome7 (Build37)
Map Location 87,458,607 - 87,641,375
singlet/doubletdoublet
Overlap genePrc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm
Upstream geneAbhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b
Downstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262C16.bB6Ng01-262C16.g
ACCGA066656GA066657
length1,1421,089
definitionB6Ng01-262C16.b B6Ng01-262C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,458,607 - 87,459,759)(87,640,289 - 87,641,375)
sequence
gaattcctgttctggggttcaaaaataagtatgtggtttctgtttctgac
ggacgtgctagcttgtacagtaacgtgttcaggcttgaatttggattctc
agccccacctaagattgtgcaaagattatttttctaaactatttacaaaa
ccaaattagaaaaggaaaaaatacccggccccatcgccatgcccagttgt
ggtctcaaagggctagaatgtgctaggagtacagccccatcaatagggat
gggaaccccagctgtgtgctgcttatactgaggctcttggcctgtgtgct
gattactgcctggagtatataccttactaaccctcggggctgaactgccc
tatttgtctggcctatgcttattttctacttatatctgccagcgacttgc
taatatgtgtatgaacactaaaaacaccttttcactctgctctttccctg
caatttatcctactctgagtttgctgacctcttttttaaccatctcttct
gtcttcccacggtgtcttaccagtgaggtgagggctgctcccccctttta
gggtgcaccatgttaaacttagactgcctcctctcatggtgccagaggga
aggacatggggacatagacgagcctggccactatgggattcttcatgttc
tggcctggcttcccatgacacaggtggtggtgtttattagaagaaatggg
gcatagctctagttggctgattgctcaatagcagaccgatctagttttct
ttttgtctgctcaaagcccatttcctgtttgaggcttaaatgtagctaca
atccatctatggctaagcctacagggcttcttctgataccatcagctatg
gttgacgaactctatggggtagcactaaagccactcactcagctgacgtc
tactaatacaggtccttctcagtggccagtcacgctttctctcttttgct
ttccaccatgtactccagcatgagatcaaatcaccagcagttacaaagcc
tcagccccagggattggtagattagtcactgaccttgttatgcaaagggg
tcagaaaccaaagctgctagcatgtgcagctttggcttctatcccagcag
gtgagaaagcacgaagttgttgcctctcttggcagaacaact
gaattcctaaacctcctttctcatcctcctgccagctaggattcctcata
tgtatgccaccacacctaagtgggaaagctattttgagttgcatttaatg
ttaatttttaaaaatatgtgtactagctagatgtgacacatgcctataat
taccagtactttagaagctgagggtacaggagggtcacaagtttgagact
caaaagtgaaactcttgactcagaaaacaaaacttaaaaataaaaatggt
gcattgattgttatggtgaggtatttgtttcttttggaaagtgtgatata
tgacttataaaatatgaaacctaagcacgatcatatctgattaatgtata
aataaaatgaaatttaaattattactcttaacttagattccagctacata
tctgacaggggataagactgactcagaagctgcaaatatttacctccaat
tatccaaaaaagacccaatcatcaagcttttgtatgttactccagagaag
gttcgtatttatctcactctcttcagtgtaatattgcaacgcactcaaat
acatatatttgaagaacttggtgataatttttatatacattaatgaattc
ttgtataaccttcactccagaccacagatggtaaagtcttctctgcctcc
tgtgttgtttgttctttctccagtttgttgtgaaacacttaattgacagt
gagttgcagatctgccattttacctctcctttacctcactctgcatttcc
tgactgtatagcactcccttaggaaccactgtaatttacccgtcaggaaa
tgtacagtgacacatactgttacttaagccattaacctttcagtaatgac
ctttgtaaaaaagggaaaaaaagaaaacccctatttcatctcctatctaa
acagtttcattattttgacattttgaagcataaggccagttttggggact
gtgcctcaatttgaatttgccttgtttcctgctgattaaatccctattcc
tcacgttggcagggatgccacagattgttgctgtgtgctatcagaagaac
agttggcagtgactcatccaataccaggtggtggtcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_87458607_87459759
seq2: B6Ng01-262C16.b_43_1184

seq1  GAATTCCTGTTCTGGGGTTCAAAAATAAGTATGTGGTTTCTGTTTCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCTGGGGTTCAAAAATAAGTATGTGGTTTCTGTTTCTGAC  50

seq1  GGACGTGCTAGCTTGTACAGTAACGTGTTCAGGCTTGAATTTGGATTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGCTAGCTTGTACAGTAACGTGTTCAGGCTTGAATTTGGATTCTC  100

seq1  AGCCCCACCTAAGATTGTGCAAAGATTATTTTTCTAAACTATTTACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACCTAAGATTGTGCAAAGATTATTTTTCTAAACTATTTACAAAA  150

seq1  CCAAATTAGAAAAGGAAAAAATACCCGGCCCCATCGCCATGCCCAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTAGAAAAGGAAAAAATACCCGGCCCCATCGCCATGCCCAGTTGT  200

seq1  GGTCTCAAAGGGCTAGAATGTGCTAGGAGTACAGCCCCATCAATAGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAAAGGGCTAGAATGTGCTAGGAGTACAGCCCCATCAATAGGGAT  250

seq1  GGGAACCCCAGCTGTGTGCTGCTTATACTGAGGCTCTTGGCCTGTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCCAGCTGTGTGCTGCTTATACTGAGGCTCTTGGCCTGTGTGCT  300

seq1  GATTACTGCCTGGAGTATATACCTTACTAACCCTCGGGGCTGAACTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTGCCTGGAGTATATACCTTACTAACCCTCGGGGCTGAACTGCCC  350

seq1  TATTTGTCTGGCCTATGCTTATTTTCTACTTATATCTGCCAGCGACTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTGGCCTATGCTTATTTTCTACTTATATCTGCCAGCGACTTGC  400

seq1  TAATATGTGTATGAACACTAAAAACACCTTTTCACTCTGCTCTTTCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTGTATGAACACTAAAAACACCTTTTCACTCTGCTCTTTCCCTG  450

seq1  CAATTTATCCTACTCTGAGTTTGCTGACCTCTTTTTTAACCATCTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATCCTACTCTGAGTTTGCTGACCTCTTTTTTAACCATCTCTTCT  500

seq1  GTCTTCCCACGGTGTCTTACCAGTGAGGTGAGGGCTGCTCCCCCCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCACGGTGTCTTACCAGTGAGGTGAGGGCTGCTCCCCCCTTTTA  550

seq1  GGGTGCACCATGTTAAACTTAGACTGCCTCCTCTCATGGTGCCAGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCACCATGTTAAACTTAGACTGCCTCCTCTCATGGTGCCAGAGGGA  600

seq1  AGGACATGGGGACATAGACGAGCCTGGCCACTATGGGATTCTTCATGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGGGGACATAGACGAGCCTGGCCACTATGGGATTCTTCATGTTC  650

seq1  TGGCCTGGCTTCCCATGACACAGGTGGTGGTGTTTATTAGAAGAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGCTTCCCATGACACAGGTGGTGGTGTTTATTAGAAGAAATGGG  700

seq1  GCATAGCTCTAGTTGGCTGATTGCTCAATAGCAGACCGATCTAGTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCTCTAGTTGGCTGATTGCTCAATAGCAGACCGATCTAGTTTTCT  750

seq1  TTTTGTCTGCTCAAAGCCCATTTCCTGTTTGAGGCTTAAATGTAGCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTGCTCAAAGCCCATTTCCTGTTTGAGGCTTAAATGTAGCTACA  800

seq1  ATCCATCTATGGCTAAGCCTACAGGGCTTCTTCTGATACCATCAGCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTATGGCTAAGCCTACAGGGCTTCTTCTGATACCATCAGCTATG  850

seq1  GTTGACGAACTCTATGGGGTAGCACTAAAGCCACTCACTCAGCTGACGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACGAACTCTATGGGGTAGCACTAAAGCCACTCACTCAGCTGACGTC  900

seq1  TACTAATACAGGTCCTTCTCAGTGGCCAGTCACGCTTTCTCTCTTTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATACAGGTCCTTCTCAGTGGCCAGTCACGCTTTCTCTCTTTTGCT  950

seq1  TTCCACCATGTACTCCAGCATGAGATCAAATCACCAGCAGGTTACAAAGC  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TTCCACCATGTACTCCAGCATGAGATCAAATCACCAGCA-GTTACAAAG-  998

seq1  CCTCAGCCCCAGGGATTGGTAGATAAGTCACCTGACCCTTGTTATGCAAA  1050
      |||||||||||||||||||||||| ||||| |||| ||||||||||||||
seq2  CCTCAGCCCCAGGGATTGGTAGATTAGTCA-CTGA-CCTTGTTATGCAAA  1046

seq1  GGGGTCAAGAAACCAAAGCTGCTAGCATGTGCCAGGCTTTGGGCTTCTAT  1100
      |||||| |||||||||||||||||||||||||   ||||| |||||||||
seq2  GGGGTC-AGAAACCAAAGCTGCTAGCATGTGC--AGCTTT-GGCTTCTAT  1092

seq1  CCCCAGCAGGGTGAGAAAGCACCGAAGTTTGTTG-CTCTCTTGGCCAGAC  1149
       ||||||| |||||||||||| ||||| |||||| ||||||||||   ||
seq2  -CCCAGCA-GGTGAGAAAGCA-CGAAG-TTGTTGCCTCTCTTGGCAGAAC  1138

seq1  AACT  1153
      ||||
seq2  AACT  1142

seq1: chr7_87640289_87641375
seq2: B6Ng01-262C16.g_62_1150 (reverse)

seq1  AGTGACCACCA-CTGGTAATGGGATGAGTCACTGCCAACTG-TCTTCTGA  48
      ||||||||||| ||||| || |||||||||||||||||||| ||||||||
seq2  AGTGACCACCACCTGGT-ATTGGATGAGTCACTGCCAACTGTTCTTCTGA  49

seq1  TAGCACACAGCA--CATCTGTGGCATCCCTGCCAACGTGAGGAATAGGGA  96
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  TAGCACACAGCAACAATCTGTGGCATCCCTGCCAACGTGAGGAATAGGGA  99

seq1  TTTAATCAGCAGGAAACAAGGCAAATTCAAATTGAGGCACAGTCCCCAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAGCAGGAAACAAGGCAAATTCAAATTGAGGCACAGTCCCCAAA  149

seq1  ACTGGCCCTTATGCTTCAAAATGTCAAAATAATGAAACTGTTTAGATAGG  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGG-CCTTATGCTTCAAAATGTCAAAATAATGAAACTGTTTAGATAGG  198

seq1  AGATGAAATAGGGGTTTTCTTTTTTTCCCTTTTTTACAAAGGTCATTACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATAGGGGTTTTCTTTTTTTCCCTTTTTTACAAAGGTCATTACT  248

seq1  GAAAGGTTAATGGCTTAAGTAACAGTATGTGTCACTGTACATTTCCTGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTAATGGCTTAAGTAACAGTATGTGTCACTGTACATTTCCTGAC  298

seq1  GGGTAAATTACAGTGGTTCCTAAGGGAGTGCTATACAGTCAGGAAATGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATTACAGTGGTTCCTAAGGGAGTGCTATACAGTCAGGAAATGCA  348

seq1  GAGTGAGGTAAAGGAGAGGTAAAATGGCAGATCTGCAACTCACTGTCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAAAGGAGAGGTAAAATGGCAGATCTGCAACTCACTGTCAAT  398

seq1  TAAGTGTTTCACAACAAACTGGAGAAAGAACAAACAACACAGGAGGCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTCACAACAAACTGGAGAAAGAACAAACAACACAGGAGGCAGA  448

seq1  GAAGACTTTACCATCTGTGGTCTGGAGTGAAGGTTATACAAGAATTCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTTACCATCTGTGGTCTGGAGTGAAGGTTATACAAGAATTCATT  498

seq1  AATGTATATAAAAATTATCACCAAGTTCTTCAAATATATGTATTTGAGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATAAAAATTATCACCAAGTTCTTCAAATATATGTATTTGAGTG  548

seq1  CGTTGCAATATTACACTGAAGAGAGTGAGATAAATACGAACCTTCTCTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCAATATTACACTGAAGAGAGTGAGATAAATACGAACCTTCTCTGG  598

seq1  AGTAACATACAAAAGCTTGATGATTGGGTCTTTTTTGGATAATTGGAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATACAAAAGCTTGATGATTGGGTCTTTTTTGGATAATTGGAGGT  648

seq1  AAATATTTGCAGCTTCTGAGTCAGTCTTATCCCCTGTCAGATATGTAGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGCAGCTTCTGAGTCAGTCTTATCCCCTGTCAGATATGTAGCT  698

seq1  GGAATCTAAGTTAAGAGTAATAATTTAAATTTCATTTTATTTATACATTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTAAGTTAAGAGTAATAATTTAAATTTCATTTTATTTATACATTA  748

seq1  ATCAGATATGATCGTGCTTAGGTTTCATATTTTATAAGTCATATATCACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATGATCGTGCTTAGGTTTCATATTTTATAAGTCATATATCACA  798

seq1  CTTTCCAAAAGAAACAAATACCTCACCATAACAATCAATGCACCATTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAAAGAAACAAATACCTCACCATAACAATCAATGCACCATTTTT  848

seq1  ATTTTTAAGTTTTGTTTTCTGAGTCAAGAGTTTCACTTTTGAGTCTCAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGTTTTGTTTTCTGAGTCAAGAGTTTCACTTTTGAGTCTCAAA  898

seq1  CTTGTGACCCTCCTGTACCCTCAGCTTCTAAAGTACTGGTAATTATAGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACCCTCCTGTACCCTCAGCTTCTAAAGTACTGGTAATTATAGGC  948

seq1  ATGTGTCACATCTAGCTAGTACACATATTTTTAAAAATTAACATTAAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACATCTAGCTAGTACACATATTTTTAAAAATTAACATTAAATG  998

seq1  CAACTCAAAATAGCTTTCCCACTTAGGTGTGGTGGCATACATATGAGGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAAATAGCTTTCCCACTTAGGTGTGGTGGCATACATATGAGGAA  1048

seq1  TCCTAGCTGGCAGGAGGATGAGAAAGGAGGTTTAGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGGCAGGAGGATGAGAAAGGAGGTTTAGGAATTC  1089