BAC Information

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BAC

Clone NameB6Ng01-264H24
Chromosome7 (Build37)
Map Location 52,643,153 - 52,780,868
singlet/doubletdoublet
Overlap geneSnrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116
Upstream geneSyt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b
Downstream genePlekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264H24.bB6Ng01-264H24.g
ACCGA068388GA068389
length1,1691,114
definitionB6Ng01-264H24.b B6Ng01-264H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,643,153 - 52,644,265)(52,779,412 - 52,780,868)
sequence
gaattcatgcaatctctctggagggatgacttgagctagcttgtggcaaa
ctgactgaaaccaaagcacagggagaagcctgatagcaaacagtctcaga
cctcagactaggaaccagagtctaggataggtggggtgtgatggcctatg
tactaagggggcagaactcagcttggcctacatagtgaaaccctgtctca
aaaaggaaggaagacagttaaggatacattttctcttccataccctatag
tctaaagcagggaccctgggctagtgctaaaagcaaatgaccaagatcaa
ctggtacagagaactatcaaaaccctgttccgtttggacaccaagtatta
agtcttcagaaaaagaccaagaatctattaagcaatcctaatggggtgtg
gggttactggaagctataccccagtgctacacattctgtgaccatcttat
tagctgtcctggctctctcattcatttaatccttagaatatagctgcaag
tgtcaaataaaagagatcatagaagagatagaaaaagtttaagtgggaaa
aaggcgaatgctaagattttgaggacagcctgaactacagaatgcaatgc
tgaaaattttaaaataaggggggaggggcacacaggggaagctaaagaga
tggctcagcagttagctgctcttccagaggtcctgagttcaatgcccagc
aactacatagtggttcacaaccacctgtaatggaatctagatgccctctt
ctagtgtacataaataaatctttaaaaaagtaaaataaagatcttggcct
ttctcaagatcatagcaatttagaagaattatcagggcatgcctagggtt
cttttgagccagaaagtaggactatttttttcctgccctcccatttggca
gcctaagcaatgccttatactttaagcaagtctagtcaaattggtccttt
gtttacagattgctttatcattattggacacccatcacaggccatttgat
tatttttgcaaggttttcctttcagtttatcagttgtgacctttacctaa
ccacaaggccaaaacctaagattccaaaagaaatcagcccattgatgggt
ggttctttttcatattcataagggcatggtcctgtttaaataacatgtga
acagagtaaagagagctct
gcaggcattcacgtgttgctgctgtgactatttgttaccatgactcagtg
ctgtgacccgagactgtttcccagagcgacttctaaacaaatttcccccc
tttctagcccagacacatggccccgagcccaagaccccagcatgtcctgc
actggagggacgcccacaacttctatctcctgtccccactgatgggcttg
ctcagtcgggcctggagccgcctgaggggcccagaagtcccagaggcatg
gctggcaaaaacagtaacaggagcagatcagatagaagctgcggctctgc
tgacacctacccctgtctctggtaacctcctccctcatggggagactgaa
gaaagtggatctcctgaacagagtcaagcagcccagaggctctgccttgt
ggaagctgaaagttcccctcctgaaacttggggactttcaaatgttgatg
agtacaatgcaaagccaggacaagatgaccttagagagaaggaaatggaa
cgcacagctggcaaggccacactacagcccgctggcctgcaaggggctga
taagaggcttggggaggtggtggctagagaagagggagtggctgagcccg
cttatcccacatcacagctggagggtggtccagctgagaatgaagaggat
ggagaaacagtgaagacttaccaagcttctgctgcttccatagctccggg
atacaaacccagcacccctgtgcctttcttgggggaggcagaacatcaag
ccacggaagaaaaaggaacagaaaacaaggctgacccctccaactctcct
tcttcaggctcccactccagagcctgggagtactactctagagagaagct
ctaagcaggagggagaagccaaggtagaggcacacagggcagggcagggt
caccccttgttcggatgctgaggctgaggaaggaggacctgagaccactt
ttgtctgtactggaattgccttcctgaaggccttgggtgttatcgtccag
gagaggacacagagggaggagacaacagcgattcggattcagctgaggag
acacagctcagaccgtgccacccccccattacagtgctctgaagtcttgg
tgtatcggccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52643153_52644265
seq2: B6Ng01-264H24.b_50_1218

seq1  GAATTCATGCAATCTCTCTGGAGGGATGACTTGAGCTAGCTTGTGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAATCTCTCTGGAGGGATGACTTGAGCTAGCTTGTGGCAAA  50

seq1  CTGACTGAAACCAAAGCACAGGGAGAAGCCTGATAGCAAACAGTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAAACCAAAGCACAGGGAGAAGCCTGATAGCAAACAGTCTCAGA  100

seq1  CCTCAGACTAGGAACCAGAGTCTAGGATAGGTGGGGTGTGATGGCCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACTAGGAACCAGAGTCTAGGATAGGTGGGGTGTGATGGCCTATG  150

seq1  TACTAAGGGGGCAGAACTCAGCTTGGCCTACATAGTGAAACCCTGTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGGGGCAGAACTCAGCTTGGCCTACATAGTGAAACCCTGTCTCA  200

seq1  AAAAGGAAGGAAGACAGTTAAGGATACATTTTCTCTTCCATACCCTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGGAAGACAGTTAAGGATACATTTTCTCTTCCATACCCTATAG  250

seq1  TCTAAAGCAGGGACCCTGGGCTAGTGCTAAAAGCAAATGACCAAGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGCAGGGACCCTGGGCTAGTGCTAAAAGCAAATGACCAAGATCAA  300

seq1  CTGGTACAGAGAACTATCAAAACCCTGTTCCGTTTGGACACCAAGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAGAGAACTATCAAAACCCTGTTCCGTTTGGACACCAAGTATTA  350

seq1  AGTCTTCAGAAAAAGACCAAGAATCTATTAAGCAATCCTAATGGGGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAGAAAAAGACCAAGAATCTATTAAGCAATCCTAATGGGGTGTG  400

seq1  GGGTTACTGGAAGCTATACCCCAGTGCTACACATTCTGTGACCATCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTGGAAGCTATACCCCAGTGCTACACATTCTGTGACCATCTTAT  450

seq1  TAGCTGTCCTGGCTCTCTCATTCATTTAATCCTTAGAATATAGCTGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCCTGGCTCTCTCATTCATTTAATCCTTAGAATATAGCTGCAAG  500

seq1  TGTCAAATAAAAGAGATCATAGAAGAGATAGAAAAAGTTTAAGTGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATAAAAGAGATCATAGAAGAGATAGAAAAAGTTTAAGTGGGAAA  550

seq1  AAGGCGAATGCTAAGATTTTGAGGACAGCCTGAACTACAGAATGCAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGAATGCTAAGATTTTGAGGACAGCCTGAACTACAGAATGCAATGC  600

seq1  TGAAAATTTTAAAATAAGGGGGGAGGGGCACACAGGGGAAGCTAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTTAAAATAAGGGGGGAGGGGCACACAGGGGAAGCTAAAGAGA  650

seq1  TGGCTCAGCAGTTAGCTGCTCTTCCAGAGGTCCTGAGTTCAATGCCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCAGTTAGCTGCTCTTCCAGAGGTCCTGAGTTCAATGCCCAGC  700

seq1  AACTACATAGTGGTTCACAACCACCTGTAATGGAATCTAGATGCCCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATAGTGGTTCACAACCACCTGTAATGGAATCTAGATGCCCTCTT  750

seq1  CTAGTGTACATAAATAAATCTTTAAAAAAGTAAAATAAAGATCTTGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTACATAAATAAATCTTTAAAAAAGTAAAATAAAGATCTTGGCCT  800

seq1  TTCTCAAGATCATAGCAATTTAGAAGAA-TATCA-GGCATGCCTAGGGT-  847
      |||||||||||||||||||||||||||| ||||| |||||||||||||| 
seq2  TTCTCAAGATCATAGCAATTTAGAAGAATTATCAGGGCATGCCTAGGGTT  850

seq1  -CTTTGAGCCAGAAAGTAGGACTATTTTTT--CTG-CCTCCCA-TTGGCA  892
        ||||||||||||||||||||||||||||  ||| ||||||| ||||||
seq2  CTTTTGAGCCAGAAAGTAGGACTATTTTTTTCCTGCCCTCCCATTTGGCA  900

seq1  GCCAAAGCAATGCC-TATAC-TTAAGC-AGTCTAGTCAAA-TGGTCCTT-  937
      ||| |||||||||| ||||| |||||| |||||||||||| |||||||| 
seq2  GCCTAAGCAATGCCTTATACTTTAAGCAAGTCTAGTCAAATTGGTCCTTT  950

seq1  -GTTACAGATTGC-TTATCAT--ATGGACA--CATCACAGGC--ATTGAT  979
        ||||||||||| |||||||   ||||||  ||||||||||   |||||
seq2  GTTTACAGATTGCTTTATCATTATTGGACACCCATCACAGGCCATTTGAT  1000

seq1  --ATTTTGC-AGGTTT---CTTCAG-TTATCAGTTGTGA-CTTTAC--TA  1019
         |||||| ||||||    ||||| ||||||||||||| ||||||   |
seq2  TATTTTTGCAAGGTTTTCCTTTCAGTTTATCAGTTGTGACCTTTACCTAA  1050

seq1  CCAACAGGC--AAAC--TAGA-TCCAAA--GAATCAGCC--ATGAT-GGT  1059
      |||  ||||  ||||   ||| ||||||   ||||||||   |||| |||
seq2  CCACAAGGCCAAAACCTAAGATTCCAAAAGAAATCAGCCCATTGATGGGT  1100

seq1  GGTCCTTTCT----ATCATAAGGGCATGG--CTGTT--AAT-ACA-GTG-  1098
      ||| |||| |     ||||||||||||||  |||||  ||| ||| ||| 
seq2  GGTTCTTTTTCATATTCATAAGGGCATGGTCCTGTTTAAATAACATGTGA  1150

seq1  ACAG----AAGAGAGCTCT  1113
      ||||    |||||||||||
seq2  ACAGAGTAAAGAGAGCTCT  1169

seq1: chr7_52779412_52780868
seq2: B6Ng01-264H24.g_77_1190 (reverse)

seq1  TCCTGGGCGATACACCCAGGCCTTCAGGAAGGGACTTGTATGTGGGGTGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACCGGTCTGAGCTGTGTCTTCCTCAGCTGAATCCAAATCGCTGTTTTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCTGTGTCCTCTCCTGGGCGATACACCCAGGCCTTCAGGAAGGCACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTATGGGGGGTGGCACCGGTCTGAGCTGTGTCTTCCTCAGCTGAATCCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATCGCTGTTTTCTTCCTCTGTGTCCTCTCCTGGGCGATACACCCAGGCC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGGAAGGCACTTGTATGGGGGGTGGCACCGGTCTGAGCTGTGTCTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGCTGAATCCGAATCGCTGTCTTCTTCCTCTGTGTCCTCTCCTGGGC  350
                                                |||||| |
seq2  ------------------------------------------TCCTGGCC  8

seq1  GATACACCCAGGCCTTCAGGAAGGCACTTGTAT-GGGGGGTGGCACCGGT  399
      |||||| ||| | ||||||    |||||   || ||||||||||| ||||
seq2  GATACA-CCAAGACTTCAG---AGCACTGTAATGGGGGGGTGGCA-CGGT  53

seq1  CTGAGCTGTGTCTTCCTCAGCTGAATCCGAATCGCTGTTGTCTTCTTCCT  449
      |||||||||||| |||||||||||||||||||||||||||||| || |||
seq2  CTGAGCTGTGTC-TCCTCAGCTGAATCCGAATCGCTGTTGTCTCCTCCCT  102

seq1  CTGTGTCCTCTCCTGGGCGAT-ACACCC-AGGCCTTCAGGAAGGCATTTC  497
      |||||||||||||||| |||| |||||| ||||||||||||||||| |||
seq2  CTGTGTCCTCTCCTGGACGATAACACCCAAGGCCTTCAGGAAGGCAATTC  152

seq1  CAGTACAGACAAAAGTTGTCTCAGGTCCTCCTTCCTCAGCCTCAGCATTC  547
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  CAGTACAGACAAAAGTGGTCTCAGGTCCTCCTTCCTCAGCCTCAGCATCC  202

seq1  CGACAA-GGGTGACCCTGCCCTGCCCTGTGTGCCTCTACCTTGGCTTCTC  596
        |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGGGTGACCCTGCCCTGCCCTGTGTGCCTCTACCTTGGCTTCTC  252

seq1  CCTCCTGCTTAG-GCTTCTCTCTAGAGTAGTACTCCCAGGCTCTGGAGTG  645
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCTTAGAGCTTCTCTCTAGAGTAGTACTCCCAGGCTCTGGAGTG  302

seq1  GGAGCCTGAAGAAGGAGAGTTGGAGGGGTCAGCCTTGTTTTCTGTTCCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGAAGAAGGAGAGTTGGAGGGGTCAGCCTTGTTTTCTGTTCCTT  352

seq1  TTTCTTCCGTGGCTTGATGTTCTGCCTCCCCCAAGAAAGGCACAGGGGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCGTGGCTTGATGTTCTGCCTCCCCCAAGAAAGGCACAGGGGTG  402

seq1  CTGGGTTTGTATCCCGGAGCTATGGAAGCAGCAGAAGCTTGGTAAGTCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGTATCCCGGAGCTATGGAAGCAGCAGAAGCTTGGTAAGTCTT  452

seq1  CACTGTTTCTCCATCCTCTTCATTCTCAGCTGGACCACCCTCCAGCTGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTCTCCATCCTCTTCATTCTCAGCTGGACCACCCTCCAGCTGTG  502

seq1  ATGTGGGATAAGCGGGCTCAGCCACTCCCTCTTCTCTAGCCACCACCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGATAAGCGGGCTCAGCCACTCCCTCTTCTCTAGCCACCACCTCC  552

seq1  CCAAGCCTCTTATCAGCCCCTTGCAGGCCAGCGGGCTGTAGTGTGGCCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTCTTATCAGCCCCTTGCAGGCCAGCGGGCTGTAGTGTGGCCTT  602

seq1  GCCAGCTGTGCGTTCCATTTCCTTCTCTCTAAGGTCATCTTGTCCTGGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGTGCGTTCCATTTCCTTCTCTCTAAGGTCATCTTGTCCTGGCT  652

seq1  TTGCATTGTACTCATCAACATTTGAAAGTCCCCAAGTTTCAGGAGGGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGTACTCATCAACATTTGAAAGTCCCCAAGTTTCAGGAGGGGAA  702

seq1  CTTTCAGCTTCCACAAGGCAGAGCCTCTGGGCTGCTTGACTCTGTTCAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTTCCACAAGGCAGAGCCTCTGGGCTGCTTGACTCTGTTCAGG  752

seq1  AGATCCACTTTCTTCAGTCTCCCCATGAGGGAGGAGGTTACCAGAGACAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACTTTCTTCAGTCTCCCCATGAGGGAGGAGGTTACCAGAGACAG  802

seq1  GGGTAGGTGTCAGCAGAGCCGCAGCTTCTATCTGATCTGCTCCTGTTACT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTGTCAGCAGAGCCGCAGCTTCTATCTGATCTGCTCCTGTTACT  852

seq1  GTTTTTGCCAGCCATGCCTCTGGGACTTCTGGGCCCCTCAGGCGGCTCCA  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCCAGCCATGCCTCTGGGACTTCTGGGCCCCTCAGGCGGCTCCA  902

seq1  GGCCCGACTGAGCAAGCCCATCAGTGGGGACAGGAGATAGAAGTTGTGGG  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGACTGAGCAAGCCCATCAGTGGGGACAGGAGATAGAAGTTGTGGG  952

seq1  CGTCCCTCCAGTGCAGGACATGCTGGGGTCTTGGGCTCGGGGCCATGTGT  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCTCCAGTGCAGGACATGCTGGGGTCTTGGGCTCGGGGCCATGTGT  1002

seq1  CTGGGCTAGAAAGGGGGGAAATTTGTTTAGAAGTCGCTCTGGGAAACAGT  1395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAGAAAGGGGGGAAATTTGTTTAGAAGTCGCTCTGGGAAACAGT  1052

seq1  CTCGGGTCACAGCACTGAGTCATGGTAACAAATAGTCACAGCAGCAACAC  1445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTCACAGCACTGAGTCATGGTAACAAATAGTCACAGCAGCAACAC  1102

seq1  GTGAATGCCTGC  1457
      ||||||||||||
seq2  GTGAATGCCTGC  1114