BAC Information

Click to search

BAC

Clone NameB6Ng01-266A17
Chromosome7 (Build37)13 (Build37)
Map Location 119,202,230 - 119,203,392118,810,351 - 118,810,615
singlet/doubletsingletsinglet
Overlap geneUsp47
Upstream geneEif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678
Downstream geneDkk3, Mical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266A17.bB6Ng01-266A17.g
ACCGA069539GA069540
length1,162680
definitionB6Ng01-266A17.b B6Ng01-266A17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,202,230 - 119,203,392)(118,810,351 - 118,810,615)
sequence
gaattcaaatacatagattatttcaaaggagccactcaaaaggaagagaa
aaaggaaaagaagtttacttagactttaaaagtctaatttgctgggcata
tggcacatgcctataatcccagcatttgggcaggtggatttctgtaagtt
caagaccagcatgatctacagcgtgagtatgaggacaactggggctaccc
agagaaaccctatttggaaaacaaaacaaaacaaagcactccctaagtta
cagatacttactaagcagaagtacatgaactatactataagaaaacattc
ataaaatggctgaaatttactagacgtggacttcttccataaagcattta
aggtatatgagctagtcttagaaatatacaaacacatttaacaaacaagc
tatgtcgtattttaattagagagtttatgagttcaaaaatcaacactgaa
atcttaaatttagagagggaagaaaatcaatgcatatgttctggactctc
tcaaaatcagacactccttccctacaaaagcagtaaaattatgaatggac
aaaagcagtaaaattatgaatggggacattcaataatttgacccttttct
atcagatcatttatgattcttcctccccattgcttttatgtcagtctttc
ggtagactcttgttcatatataatatacaggaagtcagcttataaagtaa
gaaatatcccaaatattacaagtaaatctatgaaggtaaatttaatttag
gatttaaaaactgtacttttattcttactttcacttatagaacatttttc
aaatactcacttatataatgcattcctaaattcaggagtcataaaaagtg
tttgcaaaaggctattcaaatagcacgtcatcgcctggtttactaatccc
acataacctttaaagagaaaatacaaatatagacagattagcacttgggc
taaaacactacaaaacaaaatacataacagaggacagactgattagttgg
aaattatttctgtttttttttttttcaatgccacttagaaagctctcttt
ctgcagtatgttattagggtaactttctccacaaaaagtcaggatacttt
gtttacccagaatacaaataaggtattattgaaatatttaacagattaga
aataacaaatgt
gaattccaaggtctgacactattactgaggctatggagtactcacaaaaa
gggacctagcatgactgccctctgaaagacccaacaagcagctgaaagaa
tcagatgcagatatttggatccaatcaatggacagaagctgctgatcact
gtggttgaattgggggaaagctggaagaagctgaggaggagggcaaccct
gtaggagaaccagcagtctcaacctggaccactgagatctctcaaacact
ggaccaacaaccaggcagcatacaccagctgatatgaggcccccaacaca
tatacaatagaggactgccaggtctgggttcagtcagagatgatgcactt
aaccctcaagaaactggagaccccagggagtttagaggtctgatggggtg
ggggaggggaatgggaggttattaaaaatggttctcactatgactagtag
gaactaaatatgttgccactttggtccctacttgcattctgtttattatt
tttctctaagctataaacatattcccaccacaagattcaggtgctaagac
aaaaaatataactagtctagcagagatgaagatattctaaagagacacat
atacctttttgatatgttttgtaaatgtagtatgatgcattgggtattat
gactggtaccttaatgggcccgtgctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_119202230_119203392
seq2: B6Ng01-266A17.b_42_1203 (reverse)

seq1  ACATTTGTTATTCTTAATATCTTGTTAAATA--TCATATAATACC-TATT  47
      ||||||||||||  ||||    |||||||||  ||| |||||||| ||||
seq2  ACATTTGTTATTTCTAAT---CTGTTAAATATTTCA-ATAATACCTTATT  46

seq1  TGTA-TCTTGGT-AACAAAGTATCCTGAC-TTTTGTTGAGAAAGTTTACC  94
      |||| ||| ||| |||||||||||||||| |||||| |||||||||  ||
seq2  TGTATTCTGGGTAAACAAAGTATCCTGACTTTTTGTGGAGAAAGTTACCC  96

seq1  TAAT-ACATACTGCAG-AAGAGAGCTTTCTTAAGTGGCATTGAAAAAAAA  142
      |||| ||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TAATAACATACTGCAGAAAGAGAGCTTTC-TAAGTGGCATTGAAAAAAAA  145

seq1  AAAAACAGAAATAATTTCCAACTAATCAGTCTTGTCCTCTGTTATGTATT  192
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAAACAGAAATAATTTCCAACTAATCAGTC-TGTCCTCTGTTATGTATT  194

seq1  TTTTGTTTTTGTAGTGTTTTAGCCCAAGTGCTAATCTGTCTATATTTGTA  242
      ||    ||||||||||||||||||||||||||||||||||||||||||||
seq2  TT---GTTTTGTAGTGTTTTAGCCCAAGTGCTAATCTGTCTATATTTGTA  241

seq1  TTTTCTCTTTAAAGGTTATGTGGGATTAGTAAACCAGGCGATGACGTGCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTAAAGGTTATGTGGGATTAGTAAACCAGGCGATGACGTGCT  291

seq1  ATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAATTTAGGAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATAGCCTTTTGCAAACACTTTTTATGACTCCTGAATTTAGGAAT  341

seq1  GCATTATATAAGTGAGTATTTGAAAAATGTTCTATAAGTGAAAGTAAGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATATAAGTGAGTATTTGAAAAATGTTCTATAAGTGAAAGTAAGAA  391

seq1  TAAAAGTACAGTTTTTAAATCCTAAATTAAATTTACCTTCATAGATTTAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACAGTTTTTAAATCCTAAATTAAATTTACCTTCATAGATTTAC  441

seq1  TTGTAATATTTGGGATATTTCTTACTTTATAAGCTGACTTCCTGTATATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATTTGGGATATTTCTTACTTTATAAGCTGACTTCCTGTATATT  491

seq1  ATATATGAACAAGAGTCTACCGAAAGACTGACATAAAAGCAATGGGGAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAACAAGAGTCTACCGAAAGACTGACATAAAAGCAATGGGGAGG  541

seq1  AAGAATCATAAATGATCTGATAGAAAAGGGTCAAATTATTGAATGTCCCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATAAATGATCTGATAGAAAAGGGTCAAATTATTGAATGTCCCC  591

seq1  ATTCATAATTTTACTGCTTTTGTCCATTCATAATTTTACTGCTTTTGTAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAATTTTACTGCTTTTGTCCATTCATAATTTTACTGCTTTTGTAG  641

seq1  GGAAGGAGTGTCTGATTTTGAGAGAGTCCAGAACATATGCATTGATTTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGTGTCTGATTTTGAGAGAGTCCAGAACATATGCATTGATTTTC  691

seq1  TTCCCTCTCTAAATTTAAGATTTCAGTGTTGATTTTTGAACTCATAAACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCTAAATTTAAGATTTCAGTGTTGATTTTTGAACTCATAAACT  741

seq1  CTCTAATTAAAATACGACATAGCTTGTTTGTTAAATGTGTTTGTATATTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTAAAATACGACATAGCTTGTTTGTTAAATGTGTTTGTATATTT  791

seq1  CTAAGACTAGCTCATATACCTTAAATGCTTTATGGAAGAAGTCCACGTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTAGCTCATATACCTTAAATGCTTTATGGAAGAAGTCCACGTCT  841

seq1  AGTAAATTTCAGCCATTTTATGAATGTTTTCTTATAGTATAGTTCATGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTCAGCCATTTTATGAATGTTTTCTTATAGTATAGTTCATGTA  891

seq1  CTTCTGCTTAGTAAGTATCTGTAACTTAGGGAGTGCTTTGTTTTGTTTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTAGTAAGTATCTGTAACTTAGGGAGTGCTTTGTTTTGTTTTG  941

seq1  TTTTCCAAATAGGGTTTCTCTGGGTAGCCCCAGTTGTCCTCATACTCACG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAATAGGGTTTCTCTGGGTAGCCCCAGTTGTCCTCATACTCACG  991

seq1  CTGTAGATCATGCTGGTCTTGAACTTACAGAAATCCACCTGCCCAAATGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATCATGCTGGTCTTGAACTTACAGAAATCCACCTGCCCAAATGC  1041

seq1  TGGGATTATAGGCATGTGCCATATGCCCAGCAAATTAGACTTTTAAAGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTATAGGCATGTGCCATATGCCCAGCAAATTAGACTTTTAAAGTC  1091

seq1  TAAGTAAACTTCTTTTCCTTTTTCTCTTCCTTTTGAGTGGCTCCTTTGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAACTTCTTTTCCTTTTTCTCTTCCTTTTGAGTGGCTCCTTTGAA  1141

seq1  ATAATCTATGTATTTGAATTC  1163
      |||||||||||||||||||||
seq2  ATAATCTATGTATTTGAATTC  1162

seq1: chr13_118810351_118810615
seq2: B6Ng01-266A17.g_486_751

seq1  GAGGTTATTAAAAATGGTTCTCACTATGACTAGTAGGAACTAAATATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTATTAAAAATGGTTCTCACTATGACTAGTAGGAACTAAATATGTT  50

seq1  GCCACTTTGGTCCCTACTTGCATTCTGTTTATTATTTTTCTCTAAGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTGGTCCCTACTTGCATTCTGTTTATTATTTTTCTCTAAGCTAT  100

seq1  AAACATA-TCCCACCACAAGATTCAGGTGCTAAGACAAAAAATATAACTA  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTCCCACCACAAGATTCAGGTGCTAAGACAAAAAATATAACTA  150

seq1  GTCTAGCAGAGATGAAGATATTCTAAAGAGACACATATACCTTTTTGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCAGAGATGAAGATATTCTAAAGAGACACATATACCTTTTTGATA  200

seq1  TGTTTTGTAAAATGTAGTATGATGCAGTGGG-ATTAGGACTGGTACCTTA  248
      |||||||| ||||||||||||||||| |||| |||| |||||||||||||
seq2  TGTTTTGT-AAATGTAGTATGATGCATTGGGTATTATGACTGGTACCTTA  249

seq1  ATGGGCCCGTGCTGAGT  265
      |||||||||||||||||
seq2  ATGGGCCCGTGCTGAGT  266