BAC Information

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BAC

Clone NameB6Ng01-270A02
Chromosome7 (Build37)
Map Location 11,592,402 - 11,593,516
singlet/doubletsinglet
Overlap geneGm397
Upstream geneLOC100042163, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798
Downstream geneZscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A02.bB6Ng01-270A02.g
ACCGA072459GA072460
length1,1181,128
definitionB6Ng01-270A02.b B6Ng01-270A02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgact
ttctggagtccaccttcttgagttctttatatatattggatattactccc
ctatctgatttaggataagtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgactgtgtcatggttaggtatggaccttgaattcctga
tctttccaggacttttatcatgaataggtgttggatcttgtcaaatgctt
tctccgcatctaacaagatgatcatgtggtttttgtctttgagtttgttt
atatagtggattatgttgatggatttccatatattaaacgtccctgcatc
cctggaataaaacctacttggtcaggatggatgattgctttaatgtgttc
ttggattcggttagcgagaattttattgagtatttttgcatcgatattca
taagggaaattggtctgaagttctctatctttgttggatctttctgtggt
ttaggtatcagagtaattgtggcttcatagaatgagttgggtagagttcc
ttctacttctattttgtggaatactttgtgcagaactggaattaggttgt
ctttgaaggtcttgtagaattctgcactaaacccatctggtcctggggtt
tttttggctgggagactattaatgactgcttctatttctttaggggatat
gagactgtttagatctttaacttgataccgatttaactttggtacctggt
atctgtctagaaatttgtccctttcatccaggttttccagttttattgag
tatagccttttgtagaaggatctgatggtgttttgtatttattcatagtt
tgttgttatgtctccccttttcatttctgattttgttaattaggatgctg
tccctgtgccctctagtgagtctagctaagggtttatctatcttgttgat
tttatcaaagaacaactcctcgtttgggttaattcttttgatagttcttc
ttgtttacacttgggttattttgcactgagcttggattatttccctgcca
tctacctcctcttgagttgaatcttgctttcctttccttttccaaagcat
atttagcaagtggtggtt
gaattccaggacagccagggctccacagagaaatcctgtctcaacaaaac
aaaacaaaacaaaaacaatccctaaaacaaaacctaaaacccaaaaacca
tttaacctaacacttgagaagcagagggagggtaattcctctgcttacaa
ggccaaggaagactacataaagaaacaatgctgcagcagggcagtggtgg
catacgcctttaatcccagcacttaggaggcagaggcaggcagatttctg
agttctaggacagcatggtctacaaagtgagttccaagacagccagggct
atacagagaaaccctgtctccaaaaataaacaaacaagcaaacaaacaaa
caaaccatgttgtaaatcacaaatacaagcaagcaagcaaccaggaaatg
aaccacaaaactaaaccaataaaaatctaaacaaaatatctgaaatagga
agcatttttaattggtatgtaggaatgcatgtatggggtggtagaatatt
ttcaacttttcacaatttctgtaaataactaagaattttgcaaatcacgg
ctttgagaaaacatccaacataattaaatctttattaggtctatccaaat
ttgaatgtttggactgaagcaccattatgcatcacagaaattcttatggg
tatggtgctgttttgtatacagcaccaaccatatttcaatatcagaactt
taccattctgacacctcagttttctagacagagattcaatgatatgtaat
agccaatttgagaatccatctagtcaatttaatcccaaatttttgcccca
cacttccacagatcacaggctagcactgtgaaccctgtgtataagtgttc
atggcaggatctaacatagtcctcaatgaatactcagtaaagcatctcca
ggaacaagctgggtctcacacacaagtttatcttctttctacatccttaa
agtcctcccccaggacaattcttcattctctctactaacaatgtaaataa
actagacttaagttgtgcatatcaaacctaattgaatagctctttctgct
atattcatgaataattttgaagcaatcatttttcttcagtatataaatta
ttttttgtacagaatatatatcttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11592402_11593516
seq2: B6Ng01-270A02.g_62_1189 (reverse)

seq1  AAAGGAGAT-TATATTCTGTAACAAAAATA---TTTATACTGAAGAAAAA  46
      |||| |||| |||||||||||  |||||||   | |||||||||||||||
seq2  AAAGAAGATATATATTCTGTACAAAAAATAATTTATATACTGAAGAAAAA  50

seq1  TGATTGCCTC-AAATTA-TCATGAATATAGCAGAAAGGAGCCTATCAATT  94
      ||||||| || |||||| |||||||||||||||||| ||||   ||||||
seq2  TGATTGCTTCAAAATTATTCATGAATATAGCAGAAA-GAGCTATTCAATT  99

seq1  AGGTTTGATATGCACAAC-TAAGTCTAGTTTATTTACA-TGTTAGTAGAG  142
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  AGGTTTGATATGCACAACTTAAGTCTAGTTTATTTACATTGTTAGTAGAG  149

seq1  AGAATGAAGAATTGTCCT-GGGGAGGACTTTAAGGATGTAGAA--GAGAT  189
      |||||||||||||||||| ||||||||||||||||||||||||   ||||
seq2  AGAATGAAGAATTGTCCTGGGGGAGGACTTTAAGGATGTAGAAAGAAGAT  199

seq1  -AACTTGTGTGTGAGACCCAGCTTGTTCCTGGAGATGC-TTACTGAGTAT  237
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAACTTGTGTGTGAGACCCAGCTTGTTCCTGGAGATGCTTTACTGAGTAT  249

seq1  TCA-TGAGGACTATGTTAGATCCTGCCATGAACACTTATACACAGGGTTC  286
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGGACTATGTTAGATCCTGCCATGAACACTTATACACAGGGTTC  299

seq1  ACAGTGCTAGCCTGTGATCTGTGGAAGTGTGGGGCAAAAATTTGGGATTA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTAGCCTGTGATCTGTGGAAGTGTGGGGCAAAAATTTGGGATTA  349

seq1  AATTGACTAGATGGATTCTCAAATTGGCTATTACATATCATTGAATCTCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTAGATGGATTCTCAAATTGGCTATTACATATCATTGAATCTCT  399

seq1  GTCTAGAAAACTGAGGTGTCAGAATGGTAAAGTTCTGATATTGAAATATG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAAAACTGAGGTGTCAGAATGGTAAAGTTCTGATATTGAAATATG  449

seq1  GTTGGTGCTGTATACAAAACAGCACCATACCCATAAGAATTTCTGTGATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGCTGTATACAAAACAGCACCATACCCATAAGAATTTCTGTGATG  499

seq1  CATAATGGTGCTTCAGTCCAAACATTCAAATTTGGATAGACCTAATAAAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGTGCTTCAGTCCAAACATTCAAATTTGGATAGACCTAATAAAG  549

seq1  ATTTAATTATGTTGGATGTTTTCTCAAAGCCGTGATTTGCAAAATTCTTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTATGTTGGATGTTTTCTCAAAGCCGTGATTTGCAAAATTCTTA  599

seq1  GTTATTTACAGAAATTGTGAAAAGTTGAAAATATTCTACCACCCCATACA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTACAGAAATTGTGAAAAGTTGAAAATATTCTACCACCCCATACA  649

seq1  TGCATTCCTACATACCAATTAAAAATGCTTCCTATTTCAGATATTTTGTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCTACATACCAATTAAAAATGCTTCCTATTTCAGATATTTTGTT  699

seq1  TAGATTTTTATTGGTTTAGTTTTGTGGTTCATTTCCTGGTTGCTTGCTTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTATTGGTTTAGTTTTGTGGTTCATTTCCTGGTTGCTTGCTTG  749

seq1  CTTGTATTTGTGATTTACAACATGGTTTGTTTGTTTGTTTGCTTGTTTGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTGTGATTTACAACATGGTTTGTTTGTTTGTTTGCTTGTTTGT  799

seq1  TTATTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCTTGGAACT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCTTGGAACT  849

seq1  CACTTTGTAGACCATGCTGTCCTAGAACTCAGAAATCTGCCTGCCTCTGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCATGCTGTCCTAGAACTCAGAAATCTGCCTGCCTCTGC  899

seq1  CTCCTAAGTGCTGGGATTAAAGGCGTATGCCACCACTGCCCTGCTGCAGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGTGCTGGGATTAAAGGCGTATGCCACCACTGCCCTGCTGCAGC  949

seq1  ATTGTTTCTTTATGTAGTCTTCCTTGGCCTTGTAAGCAGAGGAATTACCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTTTATGTAGTCTTCCTTGGCCTTGTAAGCAGAGGAATTACCC  999

seq1  TCCCTCTGCTTCTCAAGTGTTAGGTTAAATGGTTTTTGGGTTTTAGGTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCTTCTCAAGTGTTAGGTTAAATGGTTTTTGGGTTTTAGGTTT  1049

seq1  TGTTTTAGGGATTGTTTTTGTTTTGTTTTGTTTTGTTGAGACAGGATTTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGGGATTGTTTTTGTTTTGTTTTGTTTTGTTGAGACAGGATTTC  1099

seq1  TCTGTGGAGCCCTGGCTGTCCTGGAATTC  1115
      |||||||||||||||||||||||||||||
seq2  TCTGTGGAGCCCTGGCTGTCCTGGAATTC  1128