BAC Information

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BAC

Clone NameB6Ng01-270B01
Chromosome7 (Build37)
Map Location 123,092,100 - 123,231,603
singlet/doubletdoublet
Overlap geneSox6, 1110006G14Rik, EG668479, LOC100043313
Upstream geneLOC668472, LOC100042779
Downstream gene1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270B01.bB6Ng01-270B01.g
ACCGA072503GA072504
length1,189735
definitionB6Ng01-270B01.b B6Ng01-270B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,092,100 - 123,093,282)(123,230,869 - 123,231,603)
sequence
gaattccacaaggcttagctttcgcatttaatgttttttaacaattgcat
gaagtacttttagctattaaaaaaacactgaattttgactttcaaaagaa
tttataacaaggctaacactgaagtgtggtattaggagtgtttacatgta
cgcaggtacacatgtacatgtgcacacatgtatgaaggccagaagtcaac
tccatgcgctatttctagggagctaaccaacctgttttctgctagcacag
caatcttccctagaagagcttgcctctttagtgaaatatgagttctactc
ttaaagagttccaaagacagttcttaatgaagccaggtcacttagctact
catgtattctgtttctcagtctgcatgaccaatattattttagtgtaagg
gtcccacctcaaaagagatattagaaaagcaatcagaggagatggctgag
cagcacagaactacaatgacattaagatagtctcatagtctaagaatatt
ggctactctactgatagtcaaacccctggatatcaggatttttcacagtc
cttaaaatttacaaatcccaaaaacttagtgctatatttagaagtattca
ttatgctaaaaactggaacttgtgtatttttaagtattgatttatttaaa
atagcaacaataaatctattatccaataatataagagttaatgaaatgca
ttgtttctcatttttgtaaatttcttaaatgctttctcctctgaaggaca
gctatgatctcctggatgccactaaagtcaaactgttgacaagctggttt
ggtatcaacaggaagaagtatccatttgtactgagatacatactcaaaaa
gaggtaacaacaggaagaagtatccatttgtactcagatacatactcaga
aagaggtatcaacagggaagaagtatccatttgtactcagatacatactc
agaaagaggtatcaacaggaagaagtatccatttgtactgagatacatac
tcagaaagaggtacacaggaagaagtatccatttgtactgagatacaata
ctcagaaaagaggttaacaacaggaagaagtatccaattttgtactgaga
ttacatacttcaaaaagagcagaatgctttgtagcctttccagattatgt
gactattttcctgaatctatatatcaaaaactggacaag
gaattcactatgaggaccaggttggcctcaaaccaggctggccagaaggg
agggactgaagaattgcctctgcctcccaagtgtcagaattaaaaacaca
tgctttgaaaataagttaaaatattttaaaatataaaaattaaaagcatg
tgtggtggcacatacctttagtcccatcactcaggaggctgaggcaggag
gcttatgagttggagaccagtctgggctcactagcaaaataaatcaagaa
atcatgaaatacatttataatttcaatctttcagactttgtattttgcac
acaagtaattctcttgtaagctaggctaacacagaacatattgattgaca
ttctttctgaaatttaagagtatagagatgaacatgcttttgatggtttt
tatttcagtatttctgaggagaaaagaccacaaatgttttgctgtaataa
ctttccatttcgaaatgaagcatgctaaactgacatcctaaatccccaag
catagaattagagtatcttagttttatagaagacacacacttcatacagg
ctcttagaaattgcccctgaaagtttaatgaattaattcctttattgttg
ttgctgctaaactgttgttttggttttttgtttgtttgtttgttttaaag
actggcgaggttattgggggctgagggtaggaagaactcaatactacaaa
ggaagtaaagcgggaatgtcagggtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123092100_123093282
seq2: B6Ng01-270B01.b_42_1230

seq1  GAATTCCACAAGGCTTAGCTTTCGCATTTAATGTTTTTTAACAATTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGGCTTAGCTTTCGCATTTAATGTTTTTTAACAATTGCAT  50

seq1  GAAGTACTTTTAGCTATTAAAAAAACACTGAATTTTGACTTTCAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTTTTAGCTATTAAAAAAACACTGAATTTTGACTTTCAAAAGAA  100

seq1  TTTATAACAAGGCTAACACTGAAGTGTGGTATTAGGAGTGTTTACATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACAAGGCTAACACTGAAGTGTGGTATTAGGAGTGTTTACATGTA  150

seq1  CGCAGGTACACATGTACATGTGCACACATGTATGAAGGCCAGAAGTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGTACACATGTACATGTGCACACATGTATGAAGGCCAGAAGTCAAC  200

seq1  TCCATGCGCTATTTCTAGGGAGCTAACCAACCTGTTTTCTGCTAGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCGCTATTTCTAGGGAGCTAACCAACCTGTTTTCTGCTAGCACAG  250

seq1  CAATCTTCCCTAGAAGAGCTTGCCTCTTTAGTGAAATATGAGTTCTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCCTAGAAGAGCTTGCCTCTTTAGTGAAATATGAGTTCTACTC  300

seq1  TTAAAGAGTTCCAAAGACAGTTCTTAATGAAGCCAGGTCACTTAGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGTTCCAAAGACAGTTCTTAATGAAGCCAGGTCACTTAGCTACT  350

seq1  CATGTATTCTGTTTCTCAGTCTGCATGACCAATATTATTTTAGTGTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTCTGTTTCTCAGTCTGCATGACCAATATTATTTTAGTGTAAGG  400

seq1  GTCCCACCTCAAAAGAGATATTAGAAAAGCAATCAGAGGAGATGGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCTCAAAAGAGATATTAGAAAAGCAATCAGAGGAGATGGCTGAG  450

seq1  CAGCACAGAACTACAATGACATTAAGATAGTCTCATAGTCTAAGAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGAACTACAATGACATTAAGATAGTCTCATAGTCTAAGAATATT  500

seq1  GGCTACTCTACTGATAGTCAAACCCCTGGATATCAGGATTTTTCACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTCTACTGATAGTCAAACCCCTGGATATCAGGATTTTTCACAGTC  550

seq1  CTTAAAATTTACAAATCCCAAAAACTTAGTGCTATATTTAGAAGTATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTTACAAATCCCAAAAACTTAGTGCTATATTTAGAAGTATTCA  600

seq1  TTATGCTAAAAACTGGAACTTGTGTATTTTTAAGTATTGATTTATTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTAAAAACTGGAACTTGTGTATTTTTAAGTATTGATTTATTTAAA  650

seq1  ATAGCAACAATAAATCTATTATCCAATAATATAAGAGTTAATGAAATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACAATAAATCTATTATCCAATAATATAAGAGTTAATGAAATGCA  700

seq1  TTGTTTCTCATTTTTGTAAATTTCTTAAATGCTTTCTCCTCTGAAGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCATTTTTGTAAATTTCTTAAATGCTTTCTCCTCTGAAGGACA  750

seq1  GCTATGATCTCCTGGATGCCACTAAAGTCAAACTGTTGACAAGCTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATCTCCTGGATGCCACTAAAGTCAAACTGTTGACAAGCTGGTTT  800

seq1  GGTATCAACAGGAAGAAGTATCCATTTGTACTGAGATACATACTCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAACAGGAAGAAGTATCCATTTGTACTGAGATACATACTCAAAAA  850

seq1  GAGGTAACAACAGGAAGAAGTATCCATTTGTACTCAGATACATACTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACAACAGGAAGAAGTATCCATTTGTACTCAGATACATACTCAGA  900

seq1  AAGAGGTATCAACA-GGAAGAAGTATCCATTTGTACTCAGATACATACTC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAGGTATCAACAGGGAAGAAGTATCCATTTGTACTCAGATACATACTC  950

seq1  AGAAAGAGGTATCAACAGGAAGAAGTATCCATTTGTACTGAGATACATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGTATCAACAGGAAGAAGTATCCATTTGTACTGAGATACATAC  1000

seq1  TCAGAAAGAGGTAACAACAGGAAGAAGTATCCATTTGTACTGAGATAC-A  1048
      |||||||||||||   |||||||||||||||||||||||||||||||| |
seq2  TCAGAAAGAGGTA--CACAGGAAGAAGTATCCATTTGTACTGAGATACAA  1048

seq1  TACTCAG-AAAGAGG-TAACAACAGGAAGAAGTATCCA--TTTGTACTGA  1094
      ||||||| ||||||| ||||||||||||||||||||||  ||||||||||
seq2  TACTCAGAAAAGAGGTTAACAACAGGAAGAAGTATCCAATTTTGTACTGA  1098

seq1  GA-TACATAC-TCAAAAAGAGGCAGAATGTTTTGTAGCCTTTCCAGATAA  1142
      || ||||||| ||||||||| |||||||| |||||||||||||||||| |
seq2  GATTACATACTTCAAAAAGA-GCAGAATGCTTTGTAGCCTTTCCAGATTA  1147

seq1  TTGTGACTATTTTTCTTTGA---TCTATATCAAAAACT-GACAAG  1183
       |||||||||||| |  |||   | ||||||||||||| ||||||
seq2  -TGTGACTATTTTCC--TGAATCTATATATCAAAAACTGGACAAG  1189

seq1: chr7_123230869_123231603
seq2: B6Ng01-270B01.g_66_800 (reverse)

seq1  CCCCCCCCCCACCCTGACATTCCCGCTTTACTTCCTTTGTAGTATTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCACCCTGACATTCCCGCTTTACTTCCTTTGTAGTATTGAGT  50

seq1  TCTTCCTACCCTCAGCCCCCAATAACCTCGCCAGTCTTTAAAACAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTACCCTCAGCCCCCAATAACCTCGCCAGTCTTTAAAACAAACAA  100

seq1  ACAAACAAAAAACCAAAACAACAGTTTAGCAGCAACAACAATAAAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAACCAAAACAACAGTTTAGCAGCAACAACAATAAAGGAAT  150

seq1  TAATTCATTAAACTTTCAGGGGCAATTTCTAAGAGCCTGTATGAAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTAAACTTTCAGGGGCAATTTCTAAGAGCCTGTATGAAGTGTG  200

seq1  TGTCTTCTATAAAACTAAGATACTCTAATTCTATGCTTGGGGATTTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTATAAAACTAAGATACTCTAATTCTATGCTTGGGGATTTAGGA  250

seq1  TGTCAGTTTAGCATGCTTCATTTCGAAATGGAAAGTTATTACAGCAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTTAGCATGCTTCATTTCGAAATGGAAAGTTATTACAGCAAAAC  300

seq1  ATTTGTGGTCTTTTCTCCTCAGAAATACTGAAATAAAAACCATCAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGTCTTTTCTCCTCAGAAATACTGAAATAAAAACCATCAAAAGC  350

seq1  ATGTTCATCTCTATACTCTTAAATTTCAGAAAGAATGTCAATCAATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATCTCTATACTCTTAAATTTCAGAAAGAATGTCAATCAATATGT  400

seq1  TCTGTGTTAGCCTAGCTTACAAGAGAATTACTTGTGTGCAAAATACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTAGCCTAGCTTACAAGAGAATTACTTGTGTGCAAAATACAAAG  450

seq1  TCTGAAAGATTGAAATTATAAATGTATTTCATGATTTCTTGATTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGATTGAAATTATAAATGTATTTCATGATTTCTTGATTTATTTT  500

seq1  GCTAGTGAGCCCAGACTGGTCTCCAACTCATAAGCCTCCTGCCTCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGAGCCCAGACTGGTCTCCAACTCATAAGCCTCCTGCCTCAGCCT  550

seq1  CCTGAGTGATGGGACTAAAGGTATGTGCCACCACACATGCTTTTAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGATGGGACTAAAGGTATGTGCCACCACACATGCTTTTAATTTT  600

seq1  TATATTTTAAAATATTTTAACTTATTTTCAAAGCATGTGTTTTTAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAAAATATTTTAACTTATTTTCAAAGCATGTGTTTTTAATTCT  650

seq1  GACACTTGGGAGGCAGAGGCAATTCTTCAGTCCCTCCCTTCTGGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGGGAGGCAGAGGCAATTCTTCAGTCCCTCCCTTCTGGCCAGCC  700

seq1  TGGTTTGAGGCCAACCTGGTCCTCATAGTGAATTC  735
      |||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAGGCCAACCTGGTCCTCATAGTGAATTC  735