BAC Information

Click to search

BAC

Clone NameB6Ng01-271F18
Chromosome7 (Build37)10 (Build37)
Map Location 147,398,850 - 147,399,986121,278,200 - 121,278,644
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524
Downstream geneE430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271F18.bB6Ng01-271F18.g
ACCGA073462GA073463
length1,154999
definitionB6Ng01-271F18.b B6Ng01-271F18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,398,850 - 147,399,986)(121,278,200 - 121,278,644)
sequence
gaattctggggacctggacaagccctgtcccacttctgaattcaaagggc
aatgagataggggagacaaacagaattcaactgatatattgtacgatgaa
atgcacatatccatttacaaaatacaataattatttaatttttttcagtg
attgggtttaaacctaggccttcatacacggcagacaaacactgtaatac
ggagccacagcctaagcaatccagtatttaattattcagaatttctatga
tttttatggacatggaaaggacctagatgagcaacataagaatgttgaaa
cagaacaaaatgtcaagatgcagactattttttttaaagacagggtttct
gtgtgtagccctggctgccctggaactcactctgtagactatcacccgcc
tctgcctcttgagtgctgggattaaaggtgtgcaccactaccacccagct
aagatgtgtactattttatcttaacacttagagctgcaataataataata
ataataataataataataataataatgaggtactgatacaaagacagaga
agcagatgaatagaatatgaggggatccagaaatacatctactacatact
cagttgatggagccaaagggcaaaaattcctacccagggacagcaagacc
aagagacccactgtctacttcacgccatatgcagaatgagtttgggatgg
atctggggccccaatagacaggtagaagctacagagcatcccgacaaaac
caaaccctggagaaattttacaacctgagcaggggatgttctgaaagaaa
caaggaagcaagcacagtgtgggccccacagtatctttggctgcactcct
ctgttctgcattgtctgaagtcacacattcccaagcaggaatgtctgaca
tcacaccctcccaaggcagggactcttctcatctttctgttctttcatgt
ctcctgggatctccctgggagccaaatgttctctccagcatgaattttta
ggctgaggatgacttagtttgggggcttctgagccgcaggacctcttgat
ggtgggtggggttgcacggatgtctgagagtcagttttgcagctgccaga
tgccacctgaccacaatgtcctctttgcaaattttggtcagcttgcctgt
tcaa
gaattcctgaaggatctcaactgccaacctgtgggaagccattgcagagt
ggcagttacagagtggcagttgcagagtggcagttacagagtggcagttg
cagagtggcagttggctactgctggccaccacacatacataggcagtcaa
ggttcttttgccaagatgaggttttgagaattaatcaaagttaaccaatc
agatgagagacaagttagccaatcagatgagagacaagttaaccaatcag
atgagagagaacgcctctcctaggcctatataaacagcaccagttctggg
cttggggtcacttcacctctgcaatcaagctctcccaataaacgtgtgcg
gaaggatcctgttgcagcgtcgttcttcctggccagtcgagcgcgcgcaa
gaccaaccaagactattgtgcccagaaaagttatctgccatagtttaagg
agaaagaaaaacgttccatgatcctaacagctaaaaattcatagccgaca
agaatttttaaaaagctaaacagaattctgaaagcaatacctgggacacc
catggaataagctcaaccatgacaacataaaaaggagcaagagaggctta
cagttaatttttattaaaaaagcacaaataaaaacacaaactatcaaaca
caaataagactgcaatcaatatatatatttaaataataactttgaatatt
aatggacttaatttttaaatcaaaagacatggactatctgaattgattaa
gaaacaaaattatctacctcttctttacaagaaactcagcccggctttaa
acacaggtaccatcctataagatgaaaactgtcattacaagcaaatgaga
tctagaagcaagtaagcattgctgtagtaatagctgacaaaatagaatcc
caataaaaactaaccacatgcgataaagagggacatttaatcctaatcaa
gtaaacagttaaccaagaaacatttctatcacatgtatgtggcaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147398850_147399986
seq2: B6Ng01-271F18.b_47_1200

seq1  GAATTCTGGGGACCTGGACAAGCCCTGTCCCACTTCTGAATTCAAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGACCTGGACAAGCCCTGTCCCACTTCTGAATTCAAAGGGC  50

seq1  AATGAGATAGGGGAGACAAACAGAATTCAACTGATATATTGTACGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATAGGGGAGACAAACAGAATTCAACTGATATATTGTACGATGAA  100

seq1  ATGCACATATCCATTTACAAAATACAATAATTATTTAATTTTTTTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATATCCATTTACAAAATACAATAATTATTTAATTTTTTTCAGTG  150

seq1  ATTGGGTTTAAACCTAGGCCTTCATACACGGCAGACAAACACTGTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTTAAACCTAGGCCTTCATACACGGCAGACAAACACTGTAATAC  200

seq1  GGAGCCACAGCCTAAGCAATCCAGTATTTAATTATTCAGAATTTCTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACAGCCTAAGCAATCCAGTATTTAATTATTCAGAATTTCTATGA  250

seq1  TTTTTATGGACATGGAAAGGACCTAGATGAGCAACATAAGAATGTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGACATGGAAAGGACCTAGATGAGCAACATAAGAATGTTGAAA  300

seq1  CAGAACAAAATGTCAAGATGCAGACTATTTTTTTTAAAGACAGGGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAATGTCAAGATGCAGACTATTTTTTTTAAAGACAGGGTTTCT  350

seq1  GTGTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACTATCACCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACTATCACCCGCC  400

seq1  TCTGCCTCTTGAGTGCTGGGATTAAAGGTGTGCACCACTACCACCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTTGAGTGCTGGGATTAAAGGTGTGCACCACTACCACCCAGCT  450

seq1  AAGATGTGTACTATTTTATCTTAACACTTAGAGCTGCAATAATAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGTACTATTTTATCTTAACACTTAGAGCTGCAATAATAATAATA  500

seq1  ATAATAATAATAATAATAATAATAATGAGGTACTGATACAAAGACAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAATAATAATGAGGTACTGATACAAAGACAGAGA  550

seq1  AGCAGATGAATAGAATATGAGGGGATCCAGAAATACATCTACTACATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGAATAGAATATGAGGGGATCCAGAAATACATCTACTACATACT  600

seq1  CAGTTGATGGAGCCAAAGGGCAAAAATTCCTACCCAGGGACAGCAAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATGGAGCCAAAGGGCAAAAATTCCTACCCAGGGACAGCAAGACC  650

seq1  AAGAGACCCACTGTCTACTTCACGCCATATGCAGAATGAGTTTGGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCCACTGTCTACTTCACGCCATATGCAGAATGAGTTTGGGATGG  700

seq1  ATCTGGGGCCCCAATAGACAGGTAGAAGCTACAGAGCATCCCGACAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGCCCCAATAGACAGGTAGAAGCTACAGAGCATCCCGACAAAAC  750

seq1  CAAACCCTGGAGAAATTTTACAACCTGAGCAGGGGATGTTCTGAAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTGGAGAAATTTTACAACCTGAGCAGGGGATGTTCTGAAAGAAA  800

seq1  CAAGGAAGCAAGCACAGTGTGGGCCCCACAGTATCTTTGGCTGCACTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGCAAGCACAGTGTGGGCCCCACAGTATCTTTGGCTGCACTCCT  850

seq1  CTGTTCTGCATTGTCTGAAGTCACACATTCCCAAGCAGGAATGTCTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCATTGTCTGAAGTCACACATTCCCAAGCAGGAATGTCTGACA  900

seq1  TCACACCCTCCCAA-GCAGGGACTCTTCTCATCTTTCTGTTC-TTCATGT  948
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TCACACCCTCCCAAGGCAGGGACTCTTCTCATCTTTCTGTTCTTTCATGT  950

seq1  CTCCCTGGATCTCCCT-GGAGCCAAATGTTCTCTCCAGCATGAATTTTAA  997
      ||||  |||||||||| ||||||||||||||||||||||||||||||| |
seq2  CTCCTGGGATCTCCCTGGGAGCCAAATGTTCTCTCCAGCATGAATTTTTA  1000

seq1  GGCTGAAGATGACTTAGTTTGGGG--CTCTGAGCCGCAGGA-CTC-TGAT  1043
      |||||| |||||||||||||||||   |||||||||||||| ||| ||||
seq2  GGCTGAGGATGACTTAGTTTGGGGGCTTCTGAGCCGCAGGACCTCTTGAT  1050

seq1  G--TGGTGGG--TGCACGGATGTCTGAGAGTCAG-TTTGCAGCTGCCAGA  1088
      |   ||||||  |||||||||||||||||||||| |||||||||||||||
seq2  GGTGGGTGGGGTTGCACGGATGTCTGAGAGTCAGTTTTGCAGCTGCCAGA  1100

seq1  TGC--ACTGACCACAATGT-CTCTTTGCAA--TTTTGTCAGCCTTGCTGT  1133
      |||   ||||||||||||| ||||||||||  ||| |||||| |  ||||
seq2  TGCCACCTGACCACAATGTCCTCTTTGCAAATTTTGGTCAGCTTGCCTGT  1150

seq1  TCAA  1137
      ||||
seq2  TCAA  1154

seq1: chr10_121278200_121278644
seq2: B6Ng01-271F18.g_99_473

seq1  TGTGGGAAGCCGTTGCAGAGTGGCAGTTACAGAGTGGCAGTTGCAGAGTG  50
                                                     |||
seq2  ----------------------------------------------TGTG  4

seq1  GCAGTTACAGAGTGGCAGTTGCAGAGTGGCAGTTACAGAGTGGCAGTTGC  100
      |          |  ||  ||||||||||||||||||||||||||||||||
seq2  G----------GAAGCCATTGCAGAGTGGCAGTTACAGAGTGGCAGTTGC  44

seq1  AGAGTGGCAGTTACAGAGTGGCAGTTGCAGAGTGGCAGTTGCAGAGTGGC  150
      |||||||||||||              |||||||||||||||||||||||
seq2  AGAGTGGCAGTTA--------------CAGAGTGGCAGTTGCAGAGTGGC  80

seq1  AGTTGGCTACTGCTGGCCACCACACATACATAGGCAGTAAATGTTCTTTT  200
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  AGTTGGCTACTGCTGGCCACCACACATACATAGGCAGTCAAGGTTCTTTT  130

seq1  GCCAAGATGAGGTTTTGAGAATTAACCAAAGTTAACCAATCAGATGAGAG  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCAAGATGAGGTTTTGAGAATTAATCAAAGTTAACCAATCAGATGAGAG  180

seq1  ACAAGTTAACCAATCAGATGAGAGACAAGTTAACCAATCAGATGAGAGAG  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAGCCAATCAGATGAGAGACAAGTTAACCAATCAGATGAGAGAG  230

seq1  AACGCCTCTCCTAGGCCTATATAAGCAGCACCAGTTCTGGGCTTGGGGTC  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACGCCTCTCCTAGGCCTATATAAACAGCACCAGTTCTGGGCTTGGGGTC  280

seq1  ACTTCGCCTCTGCAATCAAGCTCTCCCAATAAACGTGTGCAGAAGGATCC  400
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTCACCTCTGCAATCAAGCTCTCCCAATAAACGTGTGCGGAAGGATCC  330

seq1  TGTTGCAGCGTCGTTCTTGCTGGCCAGTCGAGCGCGCGCAAGACC  445
      |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTTGCAGCGTCGTTCTTCCTGGCCAGTCGAGCGCGCGCAAGACC  375