BAC Information

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BAC

Clone NameB6Ng01-271N04
Chromosome7 (Build37)
Map Location 16,171,491 - 16,172,245
singlet/doubletsinglet
Overlap genenone
Upstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1
Downstream geneLOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271N04.bB6Ng01-271N04.g
ACCGA073804GA073805
length1,0141,037
definitionB6Ng01-271N04.b B6Ng01-271N04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttattcagctctgagccccaccttttaaggggattatttgttt
ttctggagtccaccctctaagttctttatatatattggatattagtcccc
tatctgatttaagataggtaaagatcttttcccaatctgttggtggtctt
tttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttctt
gaggtcccatttgtcaatcctagatcttacagcacaagccattgctgttg
tattcaggaattttatccctgtgcccatatagtcgagacttttccccact
ttctcctctctaagtttcagtgtctctgcttttatgtgaagttccatgat
ccacttagattttacctcagtacaaggagagaggaatgggttgattcaca
ttcttctacatgataacaaccagttgtgccagcaccttttgttgaaaatg
ctatctttcttccactggatggttttagctcctttgtcgaacatcaattg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcactataccattaccatgcagtttttataacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggtactttt
atccttgagaagagcttttgctatcctaggttttttgttattccagatga
agccgctgattgccttttctaattcgttgaagaattgagttggagttttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgagagatcttccatcttct
gagatcttctttaatttcattcttcagagatgtgaagtttttttatcaat
agagatctttcactttccttagagtcacgcccagatatttttatattact
tgtgactcttgagaagggtgtgtttcccttattttctctctagccaggtc
atattcttgtgtca
gaattcaccatggtgatctaaagttgtactacagagtaattgtgttaaaa
actgcatggtactggtatagggacagacaagtagaccaatggaacagaat
tgaagacccaaaaatgaaaccacacacctatggttacttgatctttgaca
agggagcaaaaaacatccagtggaaaaaagacagcattttcaacaaatgg
tgctggcacaactggcggttatcatgtagaagaatgcaaattgatccatt
tctatctccttgtactaaggtcaaatctaagtggattaaagaattccaca
taaaaccagacatagtgaaacatatggaagagaaagtagggaaaagcctc
gaagatattggtacagggggaaaaaaatcctgaatagatcagcaatggtt
tgtgctgttaagatcgagaaacgacaaatgagaccgcatgaaattgcaaa
gcttctgcaaggcaaaagacacagtcaataagacaaaaaaggccaccaac
agattgagaaaggatctttacctatcctaaatcagagaggggactgaaat
ccaatatatataaagaaatcaagaaggtggactaccaaaaatcaaataat
cccattaaaaaatggggctcagagctaaaaaagaaatctcacctgaagaa
tacccaatggctgagaagatcctgaaaaaatgttcaacatccttaatcat
caggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcag
aatggctaagagcgtgctcttgtagtatgatgggtatacatgtgaataag
agtgtggggaggaaaaagattatgattacataaatattcatctctctaag
atgcatatttgtaattttgaggttgttttaattcttgtgtagctctattt
tgtcctgtaaagtggtaatatagagaaaaggcgggtttacaagtcatgga
gatgacctggcctcttgactccctgaattactttggaattaaagtatacc
gcccaggcaaggctgaggcaaatgtaattggtaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16171491_16172245
seq2: B6Ng01-271N04.g_330_1101

seq1  TAAGGTCAAATCTAAGTGGATTAAAGAATTCCACATAAAACCAGACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAATCTAAGTGGATTAAAGAATTCCACATAAAACCAGACATAG  50

seq1  TGAAACATATGGAAGAGAAAGTAGGGAAAAGCCTCGAAGATATTGGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATATGGAAGAGAAAGTAGGGAAAAGCCTCGAAGATATTGGTACA  100

seq1  GGGGGAAAAAAATCCTGAATAGATCAGCAATGGTTTGTGCTGTTAAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAAAAAATCCTGAATAGATCAGCAATGGTTTGTGCTGTTAAGATC  150

seq1  GAGAAACGACAAATGAGACCGCATGAAATTGCAAAGCTTCTGCAAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACGACAAATGAGACCGCATGAAATTGCAAAGCTTCTGCAAGGCAA  200

seq1  AAGACACAGTCAATAAGACAAAAAAGGCCACCAACAGATTGAGAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAGTCAATAAGACAAAAAAGGCCACCAACAGATTGAGAAAGGAT  250

seq1  CTTTACCTATCCTAAATCAGAGAGGGGACTGAAATCCAATATATATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTATCCTAAATCAGAGAGGGGACTGAAATCCAATATATATAAAG  300

seq1  AAATCAAGAAGGTGGACTACCAAAAATCAAATAATCCCATTAAAAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAAGGTGGACTACCAAAAATCAAATAATCCCATTAAAAAATGG  350

seq1  GGCTCAGAGCTAAAAAAGAAATCTCACCTGAAGAATACCCAATGGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGCTAAAAAAGAAATCTCACCTGAAGAATACCCAATGGCTGAG  400

seq1  AAGATCCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAATGCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAATGCAAATC  450

seq1  AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAGCGT  500

seq1  GCTCTTGTAGTATGATGGGTATACATGTGAATAAGAGTGTGGGGAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTAGTATGATGGGTATACATGTGAATAAGAGTGTGGGGAGGAAA  550

seq1  AAGATTATGATTACATAAATATTCATCTCTCT-AGATGCATATTTGTAAT  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGATTATGATTACATAAATATTCATCTCTCTAAGATGCATATTTGTAAT  600

seq1  TTTGAGGTTGTTTT-ATTC-TGTGTAGCTCTA-TTTGTCCTGTAAAGTGG  646
      |||||||||||||| |||| |||||||||||| |||||||||||||||||
seq2  TTTGAGGTTGTTTTAATTCTTGTGTAGCTCTATTTTGTCCTGTAAAGTGG  650

seq1  T-ATATAGAG-AAAGGC-GGTTTAGAAGTCACGGAGATGACCT-GCCTC-  691
      | |||||||| |||||| |||||| |||||| ||||||||||| ||||| 
seq2  TAATATAGAGAAAAGGCGGGTTTACAAGTCATGGAGATGACCTGGCCTCT  700

seq1  TGACT-CCTG-AGTACTTT-GAATTAAGGTATACCGCC--AGCAAGGCTG  736
      ||||| |||| | |||||| ||||||| ||||||||||   |||||||||
seq2  TGACTCCCTGAATTACTTTGGAATTAAAGTATACCGCCCAGGCAAGGCTG  750

seq1  AGGC-AATGTA--TTGTAGGAA  755
      |||| ||||||  | |||||||
seq2  AGGCAAATGTAATTGGTAGGAA  772