BAC Information

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BAC

Clone NameB6Ng01-272M13
Chromosome7 (Build37)
Map Location 122,690,636 - 122,896,324
singlet/doubletdoublet
Overlap geneSox6
Upstream geneCyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272M13.bB6Ng01-272M13.g
ACCGA074521GA074522
length1,1601,113
definitionB6Ng01-272M13.b B6Ng01-272M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,690,636 - 122,691,789)(122,895,221 - 122,896,324)
sequence
gaattctagactggtcctactttaatatctagaaggagtttctgggaagt
ggtacagggaacgacgtattctccctgagtagagagttcagaatttatga
ttgctaatgtagacataacttttggggggcactaaagaggacagatctac
agattggcttgcatgctgatatagttgagctctagtagcagatgcatgtg
agaaggcatcccgaggctggggagaatgaagagagtaaacaaaatgactg
tgtgttcataaaagactgagaaggcttactctcacattaccacagtgcaa
aggtcccttgatggacatacagggcaggaaggaaagtttctaggaggcta
ttgcctcatcctggtagtttagcaacctcaagattcctggttgttttgaa
cttaacaaatatgaaaagtatatccagagaggatccaaaagttctgtgtc
ttagaatagatttcagatacttaaagaaatgcaaacactttagtagtaaa
cactgtgaaattcaaaatatgcagtatctattcaatatatcaatatatca
atatctattcaataactgagcttatacagaagcacaataatatgaataaa
gaagagaaaaatacaactgctttcaaacaaacatcagaatggcacagata
gtagcgttagataagacagaaaaacaaaaacagcaacttataggaggtct
gaatgcaagcagaccatgacatagtctagaaatgcaatcagagaaaacat
ttatgttctttctatataagaacagtggcattttttgtgacattttgata
gggctaataattgtatgcccccccacccccactcaggttaagatagcaca
aggcatatgtcagggacaggctgtagggactaagcgcccttgccaggctg
agaaggcttttgctgtatatagagcagacacatgatactcacagcccagc
tcaacatttctcaatctttctcggtatggagtatgcaagcagacacttct
attccaaccactgaactacctttcattccttcatgaccaccaactcctgg
aattatagtgaacagactttttaatagatgaaaaccccctgttctatcgc
tggtacctcgaacaaatccctgccatgttcatattcactattacaaatgt
gtaatagtgc
gaattcatttttttttaaaaatgaaagttaaaaagggaaaaggggactcc
aggattttgaaactcactggtcctgaagtgatgggaaaataggcgaggtg
tcacagctaatttctggccctgttttatgagttctgctcttccttattct
ccctgtcagctcaggaatccccgaggctgtgcaaactggctgaacatcac
tcaatccgagttttatatccccttttaataatgttgagtctattctgtcc
aactttgattcagacaacctgcttgtcttgaaaaagtgatatatttaatc
agtggcgctgtccccagcctagctcccactgcgtgtgactgcagccgggg
agtggtgcagtgctctgtcactgctgtttgaatgggtaatgtggagccca
tcagctgagaagacaggagctggaactgcatgttaggacacacgatcaaa
agccactctccactttctgccaatcaaacctcatgttgccttgtggggca
gacattaaatagatttttttttccagccttatactgtgggcactttgcca
gtttgacatgtgaactgttacaaaaagatagcagagttttgactgcttgc
tgactgcctaaaaatattactgaacacttgtcagaaagaaatgttcataa
tgctatattatagaaagccagtgaaatgtttgttactcttatggtatact
atgggtttttgttgttgttccagaagtgattggggcagaacaaggccaga
cagttgcttctcgggagaaagtaaaaggacaagctgaatgagctgggcat
aaagctaacactcagtatgaccaacagttcagctggggtgatagtcactg
tgtgggaaataatatcagtaaatgaaatatttgttttacattcttccctg
gtgttttaaaaaatatttacttctttctggaaatcaaaaataaggagaag
gctgtttagtagttatattttgagcaaaacagccatttgaaacttgaaat
tgtgactgacatgggcatctccacctttctgttttattggaggcaataag
ccatttctgatttcaaagtcagtctctgattgtgttgttccgtggcctga
tttcagggacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122690636_122691789
seq2: B6Ng01-272M13.b_45_1204

seq1  GAATTCTAGACTGGTCCTACTTTAATATCTAGAAGGAGTTTCTGGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTGGTCCTACTTTAATATCTAGAAGGAGTTTCTGGGAAGT  50

seq1  GGTACAGGGAACGACGTATTCTCCCTGAGTAGAGAGTTCAGAATTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGGAACGACGTATTCTCCCTGAGTAGAGAGTTCAGAATTTATGA  100

seq1  TTGCTAATGTAGACATAACTTTTGGGGGGCACTAAAGAGGACAGATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATGTAGACATAACTTTTGGGGGGCACTAAAGAGGACAGATCTAC  150

seq1  AGATTGGCTTGCATGCTGATATAGTTGAGCTCTAGTAGCAGATGCATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGCTTGCATGCTGATATAGTTGAGCTCTAGTAGCAGATGCATGTG  200

seq1  AGAAGGCATCCCGAGGCTGGGGAGAATGAAGAGAGTAAACAAAATGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATCCCGAGGCTGGGGAGAATGAAGAGAGTAAACAAAATGACTG  250

seq1  TGTGTTCATAAAAGACTGAGAAGGCTTACTCTCACATTACCACAGTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCATAAAAGACTGAGAAGGCTTACTCTCACATTACCACAGTGCAA  300

seq1  AGGTCCCTTGATGGACATACAGGGCAGGAAGGAAAGTTTCTAGGAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTTGATGGACATACAGGGCAGGAAGGAAAGTTTCTAGGAGGCTA  350

seq1  TTGCCTCATCCTGGTAGTTTAGCAACCTCAAGATTCCTGGTTGTTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCATCCTGGTAGTTTAGCAACCTCAAGATTCCTGGTTGTTTTGAA  400

seq1  CTTAACAAATATGAAAAGTATATCCAGAGAGGATCCAAAAGTTCTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAATATGAAAAGTATATCCAGAGAGGATCCAAAAGTTCTGTGTC  450

seq1  TTAGAATAGATTTCAGATACTTAAAGAAATGCAAACACTTTAGTAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATAGATTTCAGATACTTAAAGAAATGCAAACACTTTAGTAGTAAA  500

seq1  CACTGTGAAATTCAAAATATGCAGTATCTATTCAATATATCAATATATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAAATTCAAAATATGCAGTATCTATTCAATATATCAATATATCA  550

seq1  ATATCTATTCAATAACTGAGCTTATACAGAAGCACAATAATATGAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATTCAATAACTGAGCTTATACAGAAGCACAATAATATGAATAAA  600

seq1  GAAGAGAAAAATACAACTGCTTTCAAACAAACATCAGAATGGCACAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAAATACAACTGCTTTCAAACAAACATCAGAATGGCACAGATA  650

seq1  GTAGCGTTAGATAAGACAGAAAAACAAAAACAGCAACTTATAGGAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGTTAGATAAGACAGAAAAACAAAAACAGCAACTTATAGGAGGTCT  700

seq1  GAATGCAAGCAGACCATGACATAGTCTAGAAATGCAATCAGAGAAAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAAGCAGACCATGACATAGTCTAGAAATGCAATCAGAGAAAACAT  750

seq1  TTATGTTCTTTCTATATAAGAACAGTGGCATTTTTTGTGACATTTTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTTTCTATATAAGAACAGTGGCATTTTTTGTGACATTTTGATA  800

seq1  GGGCTAATAATTGTATGCCCCCCCACCCCCACTCAGGTTAAGATAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAATAATTGTATGCCCCCCCACCCCCACTCAGGTTAAGATAGCACA  850

seq1  AGGCATATGTCAGGGGACAGGCTGTAGGGACTAAGCG-CCTTGCCAGGCT  899
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  AGGCATATGTCA-GGGACAGGCTGTAGGGACTAAGCGCCCTTGCCAGGCT  899

seq1  GAGAAGGCTTTTGCTGTATATAGAGCAGACACATGATACTCACAGCCCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCTTTTGCTGTATATAGAGCAGACACATGATACTCACAGCCCAG  949

seq1  CTCAACATTTCTCAATCTTTCTCGGTATGGGAGTATGCAAGCAGACACTT  999
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCAACATTTCTCAATCTTTCTCGGTAT-GGAGTATGCAAGCAGACACTT  998

seq1  CTATTCCAA-CACTGAAACTACCTTCATTTCCTTCATGACCACCAACTCC  1048
      ||||||||| ||||| |||||||||   ||||||||||||||||||||||
seq2  CTATTCCAACCACTG-AACTACCTTTCATTCCTTCATGACCACCAACTCC  1047

seq1  TGG-ATTATAGTG-ACAGAC-TTTTAATAGATGAAAACCCCCTG-TCTAT  1094
      ||| ||||||||| |||||| ||||||||||||||||||||||| |||||
seq2  TGGAATTATAGTGAACAGACTTTTTAATAGATGAAAACCCCCTGTTCTAT  1097

seq1  CGCTGTTACCTTCGACAAAT-CCTGCCATG-TCATATTTCACTA-TAC-A  1140
      ||||| |||||   |||||| ||||||||| ||||| ||||||| ||| |
seq2  CGCTGGTACCTCGAACAAATCCCTGCCATGTTCATA-TTCACTATTACAA  1146

seq1  ATGTGTAATAGTGC  1154
      ||||||||||||||
seq2  ATGTGTAATAGTGC  1160

seq1: chr7_122895221_122896324
seq2: B6Ng01-272M13.g_68_1180 (reverse)

seq1  GAGGCCCCTGAAAACA-GCCACGGGACAAACACAAACCAGAGACTGACTT  49
      |||| |||||||| || ||||||| || ||||| || |||||||||||||
seq2  GAGGTCCCTGAAATCAGGCCACGGAAC-AACAC-AATCAGAGACTGACTT  48

seq1  GGAATTCAGAAATGGGCTTATTGCCT-CAAT-AAACAGAAAGGTGGAGAT  97
       ||| |||||||| |||||||||||| |||| ||||||||||||||||||
seq2  TGAAATCAGAAAT-GGCTTATTGCCTCCAATAAAACAGAAAGGTGGAGAT  97

seq1  GCCCATGTCAGTCACAATTTCAAGTTTCAAATGCTGGTTTTGCTCAAAAT  147
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  GCCCATGTCAGTCACAATTTCAAGTTTCAAATGGCTGTTTTGCTCAAAAT  147

seq1  ATAACTACT-AACAGCC-TCTCCT--ATTTTGATTT-CAGAA--GAGTAA  190
      ||||||||| ||||||| ||||||   ||||||||| |||||   |||||
seq2  ATAACTACTAAACAGCCTTCTCCTTATTTTTGATTTCCAGAAAGAAGTAA  197

seq1  ATAATTTTTAAAACACCAGGGAAGAATGTAAAAC-AATATTTCATTTACT  239
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATTTTTTAAAACACCAGGGAAGAATGTAAAACAAATATTTCATTTACT  247

seq1  GATATTATTT-CCACACAGTGACTATCACCCCAGCTGAACTGTTGGTCAT  288
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATATTATTTCCCACACAGTGACTATCACCCCAGCTGAACTGTTGGTCAT  297

seq1  ACTGAGTGTTAGCTTTATGCCCAGCTCATTCAGCTTGTCCTTTTACTTTC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGTTAGCTTTATGCCCAGCTCATTCAGCTTGTCCTTTTACTTTC  347

seq1  TCCCGAGAAGCAACTGTCTGGCCTTGTTCTGCCCCAATCACTTCTGGAAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGAAGCAACTGTCTGGCCTTGTTCTGCCCCAATCACTTCTGGAAC  397

seq1  AACAACAAAAACCCATAGTATACCATAAGAGTAACAAACATTTCACTGGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAACCCATAGTATACCATAAGAGTAACAAACATTTCACTGGC  447

seq1  TTTCTATAATATAGCATTATGAACATTTCTTTCTGACAAGTGTTCAGTAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAATATAGCATTATGAACATTTCTTTCTGACAAGTGTTCAGTAA  497

seq1  TATTTTTAGGCAGTCAGCAAGCAGTCAAAACTCTGCTATCTTTTTGTAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGGCAGTCAGCAAGCAGTCAAAACTCTGCTATCTTTTTGTAAC  547

seq1  AGTTCACATGTCAAACTGGCAAAGTGCCCACAGTATAAGGCTGGAAAAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACATGTCAAACTGGCAAAGTGCCCACAGTATAAGGCTGGAAAAAA  597

seq1  AAATCTATTTAATGTCTGCCCCACAAGGCAACATGAGGTTTGATTGGCAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTTAATGTCTGCCCCACAAGGCAACATGAGGTTTGATTGGCAG  647

seq1  AAAGTGGAGAGTGGCTTTTGATCGTGTGTCCTAACATGCAGTTCCAGCTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAGAGTGGCTTTTGATCGTGTGTCCTAACATGCAGTTCCAGCTC  697

seq1  CTGTCTTCTCAGCTGATGGGCTCCACATTACCCATTCAAACAGCAGTGAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCAGCTGATGGGCTCCACATTACCCATTCAAACAGCAGTGAC  747

seq1  AGAGCACTGCACCACTCCCCGGCTGCAGTCACACGCAGTGGGAGCTAGGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGCACCACTCCCCGGCTGCAGTCACACGCAGTGGGAGCTAGGC  797

seq1  TGGGGACAGCGCCACTGATTAAATATATCACTTTTTCAAGACAAGCAGGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGCGCCACTGATTAAATATATCACTTTTTCAAGACAAGCAGGT  847

seq1  TGTCTGAATCAAAGTTGGACAGAATAGACTCAACATTATTAAAAGGGGAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAATCAAAGTTGGACAGAATAGACTCAACATTATTAAAAGGGGAT  897

seq1  ATAAAACTCGGATTGAGTGATGTTCAGCCAGTTTGCACAGCCTCGGGGAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCGGATTGAGTGATGTTCAGCCAGTTTGCACAGCCTCGGGGAT  947

seq1  TCCTGAGCTGACAGGGAGAATAAGGAAGAGCAGAACTCATAAAACAGGGC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCTGACAGGGAGAATAAGGAAGAGCAGAACTCATAAAACAGGGC  997

seq1  CAGAAATTAGCTGTGACACCTCGCCTATTTTCCCATCACTTCAGGACCAG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTAGCTGTGACACCTCGCCTATTTTCCCATCACTTCAGGACCAG  1047

seq1  TGAGTTTCAAAATCCTGGAGTCCCCTTTTCCCTTTTTAACTTTCATTTTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAAAATCCTGGAGTCCCCTTTTCCCTTTTTAACTTTCATTTTT  1097

seq1  AAAAAAAAATGAATTC  1104
      ||||||||||||||||
seq2  AAAAAAAAATGAATTC  1113