BAC Information

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BAC

Clone NameB6Ng01-273C20
Chromosome7 (Build37)
Map Location 102,628,192 - 102,744,728
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666816, LOC100040132, LOC666823
Downstream geneFrda-ps, EG666836, Odz4, LOC670727, LOC666858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273C20.bB6Ng01-273C20.g
ACCGA074815GA074816
length1,0981,140
definitionB6Ng01-273C20.b B6Ng01-273C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,743,616 - 102,744,728)(102,628,192 - 102,629,325)
sequence
gaattcaaggaattattaacttgcctcgttaataatctatcatatagaaa
taataaacctccccatttaaaagacactggagtacagcaacgttacaggc
caccctcttgggataaaatgcactttccttccctccccagcttgttccta
gcaggatttagtgaggacaaccatgttcaggtaagcaggctgctcacagc
ggccttcaggggatgccttttatattgtggtctctgtaactactaacccc
caccctgcccccaaagttatttttcaacaatggctttggatagctgttct
gggtttcaaaacagtaacttgagcacaatgcaaactcagaaaatacttcc
aagtgaacaattcagcattcaataaattcatgagttatggatcaccgtgg
aggtacttttctctgcaatttgacctattccagagacagattttacatgt
gaaattatcaattaagaactaatcttataaatccacagtcaaatacatgc
tggcttgtgtcctaagctttgtaggaaagaggaaactaaatgtaaaacat
ggtttggattttctattacataggaacttccattaggcttctaaccagga
agcctaatggttcatatctttacatttcttagttatttgttggatatggc
actgggattattgactgaatatcatttcttcaataaagcccgttgttttg
ttttgttttctttcaaattccattagttgctggttaatctttgtatgatg
gattctggtactgggaagctatgtctcctccctgaagtcattctgtctat
gactccttcttaagtcattggttcaccacattggcaggatgctaaaaaca
cttggcctttaaataatgcagacctaaatgttcagactgagtatggggcc
catgagagaagaaccagaggacaggctgaaacatcacattaaaaaaacaa
aaacaaacaaaacaaaactccccaggtggctcccacatgcagcaaaagcc
tagaccaatgcctgagaatcctgagccttcgcagtttgcacacacactag
atgcacgtagactcctcactgactcagcagacatgtcttcagctcacc

gaattcacctgtcataggaaatccccaaactgaatgagattccagtaatg
ggcagttgggtgtaatacacttagggacttggtagggttataataattaa
agactggtttttaacaataataataatttaatgctatttaacaatacttt
caaatagcttattagataatctgtggtgtttactgatgagaatgtaagaa
atatgagaattataaatataatgtaagaatgtaagaaatataagatacat
gtctacctgtagctaccacagagactatgtggataaaggaaactctccca
caaagagttgctacaggaattcttcccaggaaggatagtgtccctggtag
aaaactgaagagttgattccctgaggcagaattgttttaaaactaaaatt
attgtttaaagctcatcctgccaatcacatatcagaagtaaatcataaac
atgggcaaaggtttgagtttctgatatgtttacaggccccataactattg
tataatgaggcaattttatgtaaatctcttcagaattagatctggacatt
tgcaaagggcagtgtcacccattggaaatgtagcaatgagcctcttttct
gtttctttggcgttctttgtcatggggcaatttgcatgaaaataggattc
tgattactcccctgtttctcaggcgttgtttctttcttcagaactgaaag
tcatccagtgacaggccagcttccggcattcataattaaaaataagtaag
aacttgaaagagcccactgcaattagaggaataacctctgcgtcctggga
atgaaggagtcaaccatctctgtaaccatgtcgtatccattgtgaccagg
ggaacaaaggagaaaggtgcagagggcaaagtgccattgggagaagaaag
gctggatcctgaggtagatcattaaattgtggaggaaccctgtagagcaa
gcacactcttggtccatggcctgggtgaggaagcagaagagatgcagacc
acttcttattagaggaaaggtgcccttggagcagctattgttttttaatg
agttcttgttaccgtgggggtgagactcgtcctgcccactccttctgtcc
tctccccaacttgtaaattggattcattgtctccctcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_102743616_102744728
seq2: B6Ng01-273C20.b_43_1140 (reverse)

seq1  GGTGAGCTGAGGACAATGTCCTTGCTGGAGTCAGTGAGGAGGTCTAACGT  50
      |||||||||| ||| |||||  |||| ||||||||||||| |||| ||||
seq2  GGTGAGCTGAAGAC-ATGTC--TGCT-GAGTCAGTGAGGA-GTCT-ACGT  44

seq1  GCAATCTTAGGTGTGTGTGCAAAACTGCGGAAGGGCTCAGGATTTCTCAG  100
      || ||||   |||||||||| ||||||||  | ||||||||| |||||||
seq2  GC-ATCT--AGTGTGTGTGC-AAACTGCG--AAGGCTCAGGA-TTCTCAG  87

seq1  GCATTGGTCCTAGGCCTTTGCTGCATGTGGGAGCCACCTGGGGAGTTTTG  150
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  GCATTGGT-CTAGGCTTTTGCTGCATGTGGGAGCCACCTGGGGAGTTTTG  136

seq1  TTTTGTTTTGTTTTTGTTTTTTTAATGTGATGTTTCAGCCCTGTCCTCTG  200
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTG-TTTGTTTTTGTTTTTTTAATGTGATGTTTCAG-CCTGTCCTCTG  184

seq1  GTTCTTCTCTCATGGGCCCCATACTCAGTCTGAACATTTAGGTCTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTCTCATGGGCCCCATACTCAGTCTGAACATTTAGGTCTGCATT  234

seq1  ATTT-AAGGCCAAGTGTTTTTAGCATCCTGCCAATGTGGTGAACCAATGA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGCCAAGTGTTTTTAGCATCCTGCCAATGTGGTGAACCAATGA  284

seq1  CTTAAGAAGGAGTCATAGACAGAATGACTTCAGGGAGGAGACATAGCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAGGAGTCATAGACAGAATGACTTCAGGGAGGAGACATAGCTTC  334

seq1  CCAGTACCAGAATCCATCATACAAAGATTAACCAGCAACTAATGGAATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCAGAATCCATCATACAAAGATTAACCAGCAACTAATGGAATTT  384

seq1  GAAAGAAAACAAAACAAAACAACGGGCTTTATTGAAGAAATGATATTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAACAAAACAAAACAACGGGCTTTATTGAAGAAATGATATTCAG  434

seq1  TCAATAATCCCAGTGCCATATCCAACAAATAACTAAGAAATGTAAAGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATCCCAGTGCCATATCCAACAAATAACTAAGAAATGTAAAGATA  484

seq1  TGAACCATTAGGCTTCCTGGTTAGAAGCCTAATGGAAGTTCCTATGTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCATTAGGCTTCCTGGTTAGAAGCCTAATGGAAGTTCCTATGTAAT  534

seq1  AGAAAATCCAAACCATGTTTTACATTTAGTTTCCTCTTTCCTACAAAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCAAACCATGTTTTACATTTAGTTTCCTCTTTCCTACAAAGCT  584

seq1  TAGGACACAAGCCAGCATGTATTTGACTGTGGATTTATAAGATTAGTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACACAAGCCAGCATGTATTTGACTGTGGATTTATAAGATTAGTTCT  634

seq1  TAATTGATAATTTCACATGTAAAATCTGTCTCTGGAATAGGTCAAATTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAATTTCACATGTAAAATCTGTCTCTGGAATAGGTCAAATTGC  684

seq1  AGAGAAAAGTACCTCCACGGTGATCCATAACTCATGAATTTATTGAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGTACCTCCACGGTGATCCATAACTCATGAATTTATTGAATGC  734

seq1  TGAATTGTTCACTTGGAAGTATTTTCTGAGTTTGCATTGTGCTCAAGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTTCACTTGGAAGTATTTTCTGAGTTTGCATTGTGCTCAAGTTA  784

seq1  CTGTTTTGAAACCCAGAACAGCTATCCAAAGCCATTGTTGAAAAATAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGAAACCCAGAACAGCTATCCAAAGCCATTGTTGAAAAATAACT  834

seq1  TTGGGGGCAGGGTGGGGGTTAGTAGTTACAGAGACCACAATATAAAAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCAGGGTGGGGGTTAGTAGTTACAGAGACCACAATATAAAAGGC  884

seq1  ATCCCCTGAAGGCCGCTGTGAGCAGCCTGCTTACCTGAACATGGTTGTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGAAGGCCGCTGTGAGCAGCCTGCTTACCTGAACATGGTTGTCC  934

seq1  TCACTAAATCCTGCTAGGAACAAGCTGGGGAGGGAAGGAAAGTGCATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATCCTGCTAGGAACAAGCTGGGGAGGGAAGGAAAGTGCATTTT  984

seq1  ATCCCAAGAGGGTGGCCTGTAACGTTGCTGTACTCCAGTGTCTTTTAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGAGGGTGGCCTGTAACGTTGCTGTACTCCAGTGTCTTTTAAAT  1034

seq1  GGGGAGGTTTATTATTTCTATATGATAGATTATTAACGAGGCAAGTTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTTTATTATTTCTATATGATAGATTATTAACGAGGCAAGTTAAT  1084

seq1  AATTCCTTGAATTC  1113
      ||||||||||||||
seq2  AATTCCTTGAATTC  1098


seq1: chr7_102628192_102629325
seq2: B6Ng01-273C20.g_66_1205

seq1  GAATTCACCTGTCATAGGAAATCCCCAAACTGAATGAGATTCCAGTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTCATAGGAAATCCCCAAACTGAATGAGATTCCAGTAATG  50

seq1  GGCAGTTGGGTGTAATACACTTAGGGACTTGGTAGGGTTATAATAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGGGTGTAATACACTTAGGGACTTGGTAGGGTTATAATAATTAA  100

seq1  AGACTGGTTTTTAACAATAATAATAATTTAATGCTATTTAACAATACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTTTTTAACAATAATAATAATTTAATGCTATTTAACAATACTTT  150

seq1  CAAATAGCTTATTAGATAATCTGTGGTGTTTACTGATGAGAATGTAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCTTATTAGATAATCTGTGGTGTTTACTGATGAGAATGTAAGAA  200

seq1  ATATGAGAATTATAAATATAATGTAAGAATGTAAGAAATATAAGATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGAATTATAAATATAATGTAAGAATGTAAGAAATATAAGATACAT  250

seq1  GTCTACCTGTAGCTACCACAGAGACTATGTGGATAAAGGAAACTCTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCTGTAGCTACCACAGAGACTATGTGGATAAAGGAAACTCTCCCA  300

seq1  CAAAGAGTTGCTACAGGAATTCTTCCCAGGAAGGATAGTGTCCCTGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTTGCTACAGGAATTCTTCCCAGGAAGGATAGTGTCCCTGGTAG  350

seq1  AAAACTGAAGAGTTGATTCCCTGAGGCAGAATTGTTTTAAAACTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAGAGTTGATTCCCTGAGGCAGAATTGTTTTAAAACTAAAATT  400

seq1  ATTGTTTAAAGCTCATCCTGCCAATCACATATCAGAAGTAAATCATAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAAAGCTCATCCTGCCAATCACATATCAGAAGTAAATCATAAAC  450

seq1  ATGGGCAAAGGTTTGAGTTTCTGATATGTTTACAGGCCCCATAACTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAAGGTTTGAGTTTCTGATATGTTTACAGGCCCCATAACTATTG  500

seq1  TATAATGAGGCAATTTTATGTAAATCTCTTCAGAATTAGATCTGGACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGGCAATTTTATGTAAATCTCTTCAGAATTAGATCTGGACATT  550

seq1  TGCAAAGGGCAGTGTCACCCATTGGAAATGTAGCAATGAGCCTCTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGGCAGTGTCACCCATTGGAAATGTAGCAATGAGCCTCTTTTCT  600

seq1  GTTTCTTTGGCGTTCTTTGTCATGGGGCAATTTGCATGAAAATAGGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGCGTTCTTTGTCATGGGGCAATTTGCATGAAAATAGGATTC  650

seq1  TGATTACTCCCCTGTTTCTCAGGCGTTGTTTCTTTCTTCAGAACTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTCCCCTGTTTCTCAGGCGTTGTTTCTTTCTTCAGAACTGAAAG  700

seq1  TCATCCAGTGACAGGCCAGCTTCCGGCATTCATAATTAAAAATAAGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGTGACAGGCCAGCTTCCGGCATTCATAATTAAAAATAAGTAAG  750

seq1  AACTTGAAAGAGCCCACTGCAATTAGAGGAATAACCTCTGCGTCCTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAGAGCCCACTGCAATTAGAGGAATAACCTCTGCGTCCTGGGA  800

seq1  ATGAAGGAGTCAACCATCTCTGTAACCATGTCGTATCCATTGTGACCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGTCAACCATCTCTGTAACCATGTCGTATCCATTGTGACCAGG  850

seq1  GGAACAAAGGAG-AAGGTGCAGAGGGCAAAGTGCCATTGGGAGAAGAAAG  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAGGAGAAAGGTGCAGAGGGCAAAGTGCCATTGGGAGAAGAAAG  900

seq1  GCTGGATCCTGAGGTAGATCATTAAATTGTGGAGGAACCCTGTAGAGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCCTGAGGTAGATCATTAAATTGTGGAGGAACCCTGTAGAGCAA  950

seq1  GCACACTCTTGGTCCATGG-CTGGGTGAGGAAGCAGAAGAGATGCAGGAC  998
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  GCACACTCTTGGTCCATGGCCTGGGTGAGGAAGCAGAAGAGATGCA-GAC  999

seq1  CAC-TCTTA-TAGAGGGAAGGTGCCCTTGGAGCAGGCTAT--GTTTTTAA  1044
      ||| ||||| |||||| ||||||||||||||||| |||||   |||||||
seq2  CACTTCTTATTAGAGGAAAGGTGCCCTTGGAGCA-GCTATTGTTTTTTAA  1048

seq1  TGAGTTC-TGTTACCGGTGGGGTGAGACTCGTCCTG-CCACTC--TCTGT  1090
      ||||||| ||||||||  |||||||||||||||||| ||||||  |||||
seq2  TGAGTTCTTGTTACCGTGGGGGTGAGACTCGTCCTGCCCACTCCTTCTGT  1098

seq1  CCTCT-CCCAACTTGT--ATTTGTTTCATTTGTCTCCTCATCTCAAT  1134
      ||||| ||||||||||  ||| | |||| ||||||||    ||||||
seq2  CCTCTCCCCAACTTGTAAATTGGATTCA-TTGTCTCC----CTCAAT  1140


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