BAC Information

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BAC

Clone NameB6Ng01-273D24
Chromosome7 (Build37)
Map Location 19,405,553 - 19,527,156
singlet/doubletdoublet
Overlap genePsg17, Mill2, Pglyrp1, C530028I08Rik, Nova2
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19
Downstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273D24.bB6Ng01-273D24.g
ACCGA074871GA074872
length1,160927
definitionB6Ng01-273D24.b B6Ng01-273D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,405,553 - 19,406,695)(19,526,392 - 19,527,156)
sequence
gaattccacagtgactctggcagtggtgggcaggaggcagcaggataaga
gggaggctagaagggaaaagagagaagccaccaatcctgagcaggtgtga
gcatccctcagcttaggcctgtgggtaagggtttgaccataatagaggtg
agcatcgtgccctcacgccctcagagcttcagtgggtatgatttcctctc
tgaggaatcctctactcaggtgtttccatgtcactcttcatagaaacagt
ctgctgtgaggagaaacggccctcccaccttctcttcctcctcctctttt
tcttccttcccctcctcctctccctcctcctccttctcctcctcctcctc
ctcttccacacagttctcactttctgaattgttttctgttctatttatgg
ttctattaaaccagtgactttcttctgtagatactctgacttctggtcca
ctagaaaaaggctcagtttggacagggattggaattgtctttttggaaga
ttcggttcctgaaaagatctcagaaaataattggggtgaaaaggaagggg
aagaaatcaaaggaaaggaaggaaggaaggaaggaaggaaggaaggatat
ctccatggatttatctatatagtcccaggtttggaacaaatggcaatcat
tatgttcaagtgtgattccataattctgtattggatgcacaagtttggga
aggctcctgtctcactatgcacattgtgggtgcataacacctgtgtggag
ggcagagaagatcgtgcaggagcctgtatctccatctgccctgtgagagc
tgaggaatgaattcagactggcatgtctctcacacactgagccatctctc
tggcattcccaggtttaatttctactttggagagtcaccctgtcatggtt
aggaacattggccttcagaccatggccagccaatgtgactaactttgaac
aggaacagctgaggctcttctttttcctcctcagcttcctgtctgctctt
gagggtcctgctgctgagcctctgtccctcactgcaccttctgctcatga
cttacaaacagaaatcaaaggcttctcctaaacatctctcctctacagaa
taaccttgaactttctgagttttcccttttcccaccacccaatatcgaaa
agctggaaca
gaattcctaaccatgcttcctttgttgttgtttttaatgtggtgccaggg
atggaacccaggatttcatgcttgctaggcaagcactctagtcagctaag
ccgaatccccaggattgattggttggttcattcattcattcattcattca
acaaacaactactgtgtacatccttgccattagcgtgggggaaacagcca
tgaaggaaacagcaaaagcatctcttcattttgtgtgcaaataaggccat
gagaatttgaggaacctaagctagagctcagacaatgacattcttttaga
aaggagccatgctatagttcatgcaagatgggaggaagcagaatagtatg
agagcaaaaagaagcaggaaaaggggtggggaggggcagaggaatgtgag
gccagatgtgagggccaggaaaggccaacacctttgtttactattttagg
tactgggtattgaaccaaggctttcttgcaaatactttatcagcaaacta
caccccagcccctccctgggggattctaggcaggggctctaccactgagc
cactcccccaccccctccctgggggattctaggcaggggctctaccactg
agccacgcccccagcccctcactgagggattctaggcaggggctctacca
ctgagccactcccccagcccctcactagggattctcaggaggggctttac
ccaggcccttttcttaatttagggacagaatctcacaaaggttgcccaag
gctggctttgactcactctgtatcccaagcacttcattgaacttggggat
tctcttgcctcatccttcagagcatgtgaaggtggcatgccctctctctc
tggccatcagcccaagctctgagtaggcatatttatttcaccattcatct
gcagcacctgataaaacacttgattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19405553_19406695
seq2: B6Ng01-273D24.b_46_1205

seq1  GAATTCCACAGTGACTCTGGCAGTGGTGGGCAGGAGGCAGCAGGATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTGACTCTGGCAGTGGTGGGCAGGAGGCAGCAGGATAAGA  50

seq1  GGGAGGCTAGAAGGGAAAAGAGAGAAGCCACCAATCCTGAGCAGGTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTAGAAGGGAAAAGAGAGAAGCCACCAATCCTGAGCAGGTGTGA  100

seq1  GCATCCCTCAGCTTAGGCCTGTGGGTAAGGGTTTGACCATAATAGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTCAGCTTAGGCCTGTGGGTAAGGGTTTGACCATAATAGAGGTG  150

seq1  AGCATCGTGCCCTCACGCCCTCAGAGCTTCAGTGGGTATGATTTCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCGTGCCCTCACGCCCTCAGAGCTTCAGTGGGTATGATTTCCTCTC  200

seq1  TGAGGAATCCTCTACTCAGGTGTTTCCATGTCACTCTTCATAGAAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATCCTCTACTCAGGTGTTTCCATGTCACTCTTCATAGAAACAGT  250

seq1  CTGCTGTGAGGAGAAACGGCCCTCCCACCTTCTCTTCCTCCTCCTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGAGGAGAAACGGCCCTCCCACCTTCTCTTCCTCCTCCTCTTTT  300

seq1  TCTTCCTTCCCCTCCTCCTCTCCCTCCTCCTCCTTCTCCTCCTCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCCCCTCCTCCTCTCCCTCCTCCTCCTTCTCCTCCTCCTCCTC  350

seq1  CTCTTCCACACAGTTCTCACTTTCTGAATTGTTTTCTGTTCTATTTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCACACAGTTCTCACTTTCTGAATTGTTTTCTGTTCTATTTATGG  400

seq1  TTCTATTAAACCAGTGACTTTCTTCTGTAGATACTCTGACTTCTGGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAAACCAGTGACTTTCTTCTGTAGATACTCTGACTTCTGGTCCA  450

seq1  CTAGAAAAAGGCTCAGTTTGGACAGGGATTGGAATTGTCTTTTTGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAAGGCTCAGTTTGGACAGGGATTGGAATTGTCTTTTTGGAAGA  500

seq1  TTCGGTTCCTGAAAAGATCTCAGAAAATAATTGGGGTGAAAAGGAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTCCTGAAAAGATCTCAGAAAATAATTGGGGTGAAAAGGAAGGGG  550

seq1  AAGAAATCAAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATAT  600

seq1  CTCCATGGATTTATCTATATAGTCCCAGGTTTGGAACAAATGGCAATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGATTTATCTATATAGTCCCAGGTTTGGAACAAATGGCAATCAT  650

seq1  TATGTTCAAGTGTGATTCCATAATTCTGTATTGGATGCACAAGTTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAAGTGTGATTCCATAATTCTGTATTGGATGCACAAGTTTGGGA  700

seq1  AGGCTCCTGTCTCACTATGCACATTGTGGGTGCATAACACCTGTGTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTGTCTCACTATGCACATTGTGGGTGCATAACACCTGTGTGGAG  750

seq1  GGCAGAGAAGATCGTGCAGGAGCCTGTATCTCCATCTGCCCTGTGAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAAGATCGTGCAGGAGCCTGTATCTCCATCTGCCCTGTGAGAGC  800

seq1  TGAGGAATGAATTCAGACTGGCATGTCTC-CACACACTGAGCCATCTCTC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAGGAATGAATTCAGACTGGCATGTCTCTCACACACTGAGCCATCTCTC  850

seq1  TGGCATTCCCAGGTTTAATTTCTAC-TTGGAGAGTCACCCTGTCATGGTT  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGCATTCCCAGGTTTAATTTCTACTTTGGAGAGTCACCCTGTCATGGTT  900

seq1  AGGAACATTGGCCTTCAGACCATGG-CAGCCAATGTGACTAACTTTGAAC  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAACATTGGCCTTCAGACCATGGCCAGCCAATGTGACTAACTTTGAAC  950

seq1  AGGGACAGCTGAGGCTCTTC-TTTTCCTCCTCAGC-TCCTGTCTGCTC-T  994
      ||| |||||||||||||||| |||||||||||||| |||||||||||| |
seq2  AGGAACAGCTGAGGCTCTTCTTTTTCCTCCTCAGCTTCCTGTCTGCTCTT  1000

seq1  GAGGGTCCTGCTGCTGAGCCTCTGTCCCTCACTGCACCTTCTGCTCCATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGGTCCTGCTGCTGAGCCTCTGTCCCTCACTGCACCTTCTGCT-CATG  1049

seq1  AC-TACAAACAGAAATCAAAGGCTTCT-CTAGACA--TCTCCTCTACAGA  1090
      || |||||||||||||||||||||||| ||| |||  |||||||||||||
seq2  ACTTACAAACAGAAATCAAAGGCTTCTCCTAAACATCTCTCCTCTACAGA  1099

seq1  AT-ACTTTGGAC-TTCTGAGTTTCCC---TTCCCA-CACACA--ATCAGA  1132
      || || ||| || |||||||||| ||   |||||| ||| ||  |||  |
seq2  ATAACCTTGAACTTTCTGAGTTTTCCCTTTTCCCACCACCCAATATCGAA  1149

seq1  TAGCTGGAACA  1143
       ||||||||||
seq2  AAGCTGGAACA  1160

seq1: chr7_19526392_19527156
seq2: B6Ng01-273D24.g_65_830 (reverse)

seq1  GTGAGTCAAAGCCAGCCTTGGGCAACC-TTGTGAGATTCTGTCCCTAAAT  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGAGTCAAAGCCAGCCTTGGGCAACCTTTGTGAGATTCTGTCCCTAAAT  50

seq1  TAAGAAAAGGGCCTGGGTAAAGCCCCTCCTGAGAATCCCTAGTGAGGGGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGGGCCTGGGTAAAGCCCCTCCTGAGAATCCCTAGTGAGGGGC  100

seq1  TGGGGGAGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCTCAGTGAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCTCAGTGAGG  150

seq1  GGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGGG  200

seq1  AGGGGGTGGGGGAGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGGGGAGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCA  250

seq1  GGGAGGGGCTGGGGTGTAGTTTGCTGATAAAGTATTTGCAAGAAAGCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCTGGGGTGTAGTTTGCTGATAAAGTATTTGCAAGAAAGCCTT  300

seq1  GGTTCAATACCCAGTACCTAAAATAGTAAACAAAGGTGTTGGCCTTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATACCCAGTACCTAAAATAGTAAACAAAGGTGTTGGCCTTTCCT  350

seq1  GGCCCTCACATCTGGCCTCACATTCCTCTGCCCCTCCCCACCCCTTTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCACATCTGGCCTCACATTCCTCTGCCCCTCCCCACCCCTTTTCC  400

seq1  TGCTTCTTTTTGCTCTCATACTATTCTGCTTCCTCCCATCTTGCATGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTTTGCTCTCATACTATTCTGCTTCCTCCCATCTTGCATGAAC  450

seq1  TATAGCATGGCTCCTTTCTAAAAGAATGTCATTGTCTGAGCTCTAGCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATGGCTCCTTTCTAAAAGAATGTCATTGTCTGAGCTCTAGCTTA  500

seq1  GGTTCCTCAAATTCTCATGGCCTTATTTGCACACAAAATGAAGAGATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTCCTCAAATTCTCATGGCCTTATTTGCACACAAAATGAAGAGATGCN  550

seq1  TTTGCTGTTTCCTTCATGGCTGTTTCCCCCACGCTAATGGCAAGGATGTA  599
                      ||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNTGGCTGTTTCCCCCACGCTAATGGCAAGGATGTA  600

seq1  CACAGTAGTTGTTTGTTGAATGAATGAATGAATGAATGAACCAACCAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGTTGTTTGTTGAATGAATGAATGAATGAATGAACCAACCAATC  650

seq1  AATCCTGGGGATTCGGCTTAGCTGACTAGAGTGCTTGCCTAGCAAGCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGGGATTCGGCTTAGCTGACTAGAGTGCTTGCCTAGCAAGCATG  700

seq1  AAATCCTGGGTTCCATCCCTGGCACCACATTAAAAACAACAACAAAGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGGGTTCCATCCCTGGCACCACATTAAAAACAACAACAAAGGAA  750

seq1  GCATGGTTAGGAATTC  765
      ||||||||||||||||
seq2  GCATGGTTAGGAATTC  766