This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-273P02
Chromosome
7 (Build37)
Map Location
62,791,762 - 62,792,255
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC622146
,
Luzp2
,
LOC668796
Downstream gene
Siglech
,
Tubgcp5
,
Cyfip1
,
Nipa2
,
Nipa1
,
LOC672959
,
Herc2
,
p
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC622146
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:622146
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
Luzp2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233271
MGI:1889615
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668796
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668796
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Siglech
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233274
MGI:2443256
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tubgcp5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233276
MGI:2178836
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cyfip1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20430
MGI:1338801
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Nipa2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:93790
MGI:1913918
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Nipa1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233280
MGI:2442058
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC672959
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:672959
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1090 ESTs, 7 Proteins
name
Herc2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15204
MGI:103234
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
p
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18431
MGI:97454
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Luzp2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:134053918
GeneID:233271
MGI:1889615
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine zipper protein 2
transcript_id
: NM_178705.5
name
Siglech
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142364787
GeneID:233274
MGI:2443256
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sialic acid binding Ig-like lectin H
transcript_id
: NM_178706.3
name
Tubgcp5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46560556
GeneID:233276
MGI:2178836
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tubulin, gamma complex associated protein 5
transcript_id
: NM_146190.2
name
Cyfip1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:7242204
GeneID:20430
MGI:1338801
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cytoplasmic FMR1 interacting protein 1
transcript_id
: NM_011370.1
name
Nipa2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142385457
GeneID:93790
MGI:1913918
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
transcript_id
: NM_023647.3
name
Nipa1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130095
GeneID:233280
MGI:2442058
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
transcript_id
: NM_153578.2
name
LOC672959
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149257323
GeneID:672959
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1090 ESTs, 7 Proteins
product
: similar to 40S ribosomal protein S12
transcript_id
: XM_001478059.1
name
Herc2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:134288897
GeneID:15204
MGI:103234
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
transcript_id
: NM_010418.2
name
p
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130387
GeneID:18431
MGI:97454
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: pink-eyed dilution
transcript_id
: NM_021879.2
name
Luzp2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:134053919
GeneID:233271
MGI:1889615
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: leucine zipper motif 2
product
: leucine zipper protein 2
protein_id
: NP_848820.4
name
Siglech
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30520121
CCDS:CCDS21313.1
GeneID:233274
MGI:2443256
definition
codon_start
: 1
exception
: mismatches in translation
product
: SIGLEC-like protein
protein_id
: NP_848821.1
name
Tubgcp5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46560557
CCDS:CCDS21314.1
GeneID:233276
MGI:2178836
definition
GO_component
: GO:0005815 - microtubule organizing center [Evidence IEA]; GO:0000922 - spindle pole [Evidence IEA]
GO_process
: GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IEA]
codon_start
: 1
product
: tubulin, gamma complex associated protein 5
protein_id
: NP_666302.2
name
Cyfip1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7242205
CCDS:CCDS21315.1
GeneID:20430
MGI:1338801
definition
GO_component
: GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0005522 - profilin binding [Evidence TAS]
GO_process
: GO:0030032 - lamellipodium biogenesis [Evidence IDA]
codon_start
: 1
exception
: mismatches in translation
product
: cytoplasmic FMR1 interacting protein 1
protein_id
: NP_035500.1
name
Nipa2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31541945
CCDS:CCDS21316.1
GeneID:93790
MGI:1913918
definition
codon_start
: 1
product
: non-imprinted in Prader-Willi/Angelman syndrome 2
protein_id
: NP_076136.2
name
Nipa1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23956372
CCDS:CCDS21317.1
GeneID:233280
MGI:2442058
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
note
: spastic paraplegia 6 homolog
product
: non-imprinted in Prader-Willi/Angelman syndrome 1
protein_id
: NP_705806.1
name
LOC672959
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149257324
GeneID:672959
definition
codon_start
: 1
product
: similar to 40S ribosomal protein S12
protein_id
: XP_001478109.1
name
Herc2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:134288898
CCDS:CCDS21318.1
GeneID:15204
MGI:103234
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006464 - protein modification [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]
codon_start
: 1
product
: hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
protein_id
: NP_034548.2
name
p
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:11230776
CCDS:CCDS21319.1
GeneID:18431
MGI:97454
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0015137 - citrate transporter activity [Evidence IEA]
GO_process
: GO:0015746 - citrate transport [Evidence IEA]; GO:0048066 - pigmentation during development [Evidence IMP]; GO:0007286 - spermatid development [Evidence IMP]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: pink-eyed dilution protein
protein_id
: NP_068679.1
name
LOC622146
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:622146
definition
number
: 5
pseudo
: _no_value
name
LOC622146
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:622146
definition
number
: 4
pseudo
: _no_value
name
LOC622146
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:622146
definition
number
: 3
pseudo
: _no_value
name
LOC622146
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:622146
definition
number
: 2
pseudo
: _no_value
name
LOC622146
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:622146
definition
number
: 1
pseudo
: _no_value
name
LOC668796
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668796
definition
number
: 1
pseudo
: _no_value
name
LOC668796
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668796
definition
number
: 2
pseudo
: _no_value
name
LOC668796
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668796
definition
number
: 3
pseudo
: _no_value
clone name
MSMg01-086F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-045A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131F11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-089O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191A07
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-342C22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055E01
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-124A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356L16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-403F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-152J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-456K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170O11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440G02
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-442O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492A02
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-159C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415E07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535J24
singlet/doublet
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