BAC Information

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BAC

Clone NameB6Ng01-274A04
Chromosome7 (Build37)
Map Location 38,835,591 - 38,977,534
singlet/doubletdoublet
Overlap geneCcne1, 1600014C10Rik
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844, C80913
Downstream genePlekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274A04.bB6Ng01-274A04.g
ACCGA075428GA075429
length1,061777
definitionB6Ng01-274A04.b B6Ng01-274A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,835,591 - 38,836,655)(38,976,765 - 38,977,534)
sequence
gaattctatcaaaataccataggatagcttcccacttgtgttttttaagt
tgacttactcagtgattttttggcttccaagtcaccatgaatatttcata
gatacgccatacatttaatattttaacatttttacatcatatctacagta
ccggtacctgacttgtatatttatgtgactattgttagaagtgactaatt
gggtttgattagttccatcattaatattctgtccataatttaacatgctt
caataaaataccctaaagcagtgtaatgattagatttcaggaatatgtgt
tttgcaattaagttcctcttgattttgatatgcagatgaagaaatggtgg
tctcatttaaaaaaaaaaagctgcccttattaactcagcagtacgctctg
aagattaggtaagaaacccaagattttctctttgtatatgctagttaaaa
tgtatttcaatcaagtctatgtgggcaaatcagatttgattagtttaagt
tcacagtcattctatctaaatgaataatgtgtcacctaacattgcaaaaa
tttgattaatagtttatcagttaattaaaaacgaggtttaatttttcttt
tttaggaaaatgcaaggtagatattccttgtgttcatcataaatgcaaat
tatttcagcttgaatctattgttcttattctttcttccctttttttcccc
cctcttcttcttcttttcagccaattggcaaggaaataaagcattttaag
gcatgtcttccagagggacatgtagggaaatttttctcagctcctatggt
agctgtcttttgcatcttgttctagaagagttaactatttgtctggcctc
agtttctccaagtgcctcttgggcttacccagtcccctgcagtccttggg
ccagaagacatttccaagtgatgagtatgggtacccttgttctgtctaat
tggtctatggggctggaaccagggagcagggaatctcatattcctgtgac
ctgcagcctgtgtgagagctgagacatgacttctcctccacccgggtcag
atatctgcagc

gaattctaggacagccagggctacacagtgagacctagtctcaaattaaa
aaaaaaaaaaaaaagtggcaactggaagaaaaacaaggccactgagcact
gactggtcagtcacagagatctcacaggattgcatgagtgctggcggctc
ggtcccgaccgggaaacattcccactaaaactaaacctgactgagggaca
cacagggattttctgtaaaatatttgcaacttctacatattgctactcca
aaatgaattttttttccttcaagaaaaggcctttaaaaaaaattcaagta
actgcaaacagaaacgcagatgaggagtcggaggctggcaccaatactgg
ctacccctaccctacagaacaaggggaaaaggttttcctacacactttcc
ccattaaagtgggcacccctcctcactctgctacagcatccaaggggcag
ggccccatcctccctggtgtgaggtagtccaaaaaccagcctactgcgcc
ccagccccccttcccctaaaatgttgttggggaggagagtgcaggcaaaa
cggggtgggggggggtgaccatttggtgctggtagtagcaacaatagtgg
tgtctaagattgaacatcgaccaaaaaatcaacacgattgtccagttggt
tctctgtgaacagaggaaaaagatggaaccagaaccctgagggtgtgcgg
cagggaggagcaaaaaggaaagcaatgctaagctccttagcgcctcctgg
aggaaagggaaccgtcctagagtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38835591_38836655
seq2: B6Ng01-274A04.b_45_1105

seq1  GAATTCTATCAAAATACCATAGGATAGCTTCCCACTTGTGTTTTTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAAAATACCATAGGATAGCTTCCCACTTGTGTTTTTTAAGT  50

seq1  TGACTTACTCAGTGATTTTTTGGCTTCCAAGTCACCATGAATATTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACTCAGTGATTTTTTGGCTTCCAAGTCACCATGAATATTTCATA  100

seq1  GATACGCCATACATTTAATATTTTAACATTTTTACATCATATCTACAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGCCATACATTTAATATTTTAACATTTTTACATCATATCTACAGTA  150

seq1  CCGGTACCTGACTTGTATATTTATGTGACTATTGTTAGAAGTGACTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTACCTGACTTGTATATTTATGTGACTATTGTTAGAAGTGACTAATT  200

seq1  GGGTTTGATTAGTTCCATCATTAATATTCTGTCCATAATTTAACATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGATTAGTTCCATCATTAATATTCTGTCCATAATTTAACATGCTT  250

seq1  CAATAAAATACCCTAAAGCAGTGTAATGATTAGATTTCAGGAATATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATACCCTAAAGCAGTGTAATGATTAGATTTCAGGAATATGTGT  300

seq1  TTTGCAATTAAGTTCCTCTTGATTTTGATATGCAGATGAAGAAATGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATTAAGTTCCTCTTGATTTTGATATGCAGATGAAGAAATGGTGG  350

seq1  TCTCATTTAAAAAAAAAAAGCTGCCCTTATTAACTCAGCAGTACGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTAAAAAAAAAAAGCTGCCCTTATTAACTCAGCAGTACGCTCTG  400

seq1  AAGATTAGGTAAGAAACCCAAGATTTTCTCTTTGTATATGCTAGTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGGTAAGAAACCCAAGATTTTCTCTTTGTATATGCTAGTTAAAA  450

seq1  TGTATTTCAATCAAGTCTATGTGGGCAAATCAGATTTGATTAGTTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCAATCAAGTCTATGTGGGCAAATCAGATTTGATTAGTTTAAGT  500

seq1  TCACAGTCATTCTATCTAAATGAATAATGTGTCACCTAACATTGCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCATTCTATCTAAATGAATAATGTGTCACCTAACATTGCAAAAA  550

seq1  TTTGATTAATAGTTTATCAGTTAATTAAAAACGAGGTTTAATTTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAATAGTTTATCAGTTAATTAAAAACGAGGTTTAATTTTTCTTT  600

seq1  TTTAGGAAAATGCAAGGTAGATATTCCTTGTGTTCATCATAAATGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAAATGCAAGGTAGATATTCCTTGTGTTCATCATAAATGCAAAT  650

seq1  TATTTCAGCTTGAATCTATTGTTCTTATTCTTTCTTCCCTTTTTTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGCTTGAATCTATTGTTCTTATTCTTTCTTCCCTTTTTTTCCCC  700

seq1  CCTCTTCTTCTTCTTTTCAGCCAATTGGCAAGGAAATAAAGCATTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTCTTCTTTTCAGCCAATTGGCAAGGAAATAAAGCATTTTAAG  750

seq1  GCATGTCTTCCAGAGGGACATGTAGGGAAATTTTTCTCAGCTCCTATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTTCCAGAGGGACATGTAGGGAAATTTTTCTCAGCTCCTATGGT  800

seq1  AGCTGTCTTTTGCATCTTGTTCTAGAAGAGTTAACTATTTGTCTGGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTTTGCATCTTGTTCTAGAAGAGTTAACTATTTGTCTGGCCTC  850

seq1  AGTTTCTCCAAGTGCCTCTTGGGCTTACCCAGTCCCCTGCAGTCCTT-GG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTTTCTCCAAGTGCCTCTTGGGCTTACCCAGTCCCCTGCAGTCCTTGGG  900

seq1  CCAGAAGACATTTCCAAGTGATGAGTAT-GGTACCCTTGTTCTGTCTAAT  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAGAAGACATTTCCAAGTGATGAGTATGGGTACCCTTGTTCTGTCTAAT  950

seq1  TGGTCTATGGGGCTGGAACCAGGGAGCAGGGGAATCTCATATTCCTGTGA  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGTCTATGGGGCTGGAACCAGGGAGCA-GGGAATCTCATATTCCTGTGA  999

seq1  CCCTGCAGCCTGGTGTGAGAGCTGAAGACCATGACTTCTCCTCCACCCGG  1048
       |||||||||| |||||||||||| ||| |||||||||||||||||||||
seq2  -CCTGCAGCCT-GTGTGAGAGCTG-AGA-CATGACTTCTCCTCCACCCGG  1045

seq1  GTCAGGATATCTGCAGC  1065
      |||| ||||||||||||
seq2  GTCA-GATATCTGCAGC  1061


seq1: chr7_38976765_38977534
seq2: B6Ng01-274A04.g_64_840 (reverse)

seq1  TTCCACTCTAGG-CCGTTCCC-TTCCTCCAGGAGGCGCTAAGGAGC-TAG  47
      |||||||||||| | |||||| |||||||||||||||||||||||| |||
seq2  TTCCACTCTAGGACGGTTCCCTTTCCTCCAGGAGGCGCTAAGGAGCTTAG  50

seq1  CATTGCTCTCC-TTTTGCTCCTCCCTGCCGCACACCCTCAGGGTTCTGGT  96
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTCCTTTTTGCTCCTCCCTGCCGCACACCCTCAGGGTTCTGGT  100

seq1  TCCATC-TTTTCCTCTGTTCACAGAGAACC-ACTGGACAATCGTGTTGA-  143
      |||||| ||||||||||||||||||||||| |||||||||||||||||| 
seq2  TCCATCTTTTTCCTCTGTTCACAGAGAACCAACTGGACAATCGTGTTGAT  150

seq1  TTTTTGGTCGATGTTCAATCTTAGACACCACTATTGTTGCTACTACCAGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTCGATGTTCAATCTTAGACACCACTATTGTTGCTACTACCAGC  200

seq1  ACCAAATGGTCACCCCCCCCCACCCCGTTTTGCCTGCACTCTCCTCCCCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGGTCACCCCCCCCCACCCCGTTTTGCCTGCACTCTCCTCCCCA  250

seq1  ACAACATTTTAGGGGAAGGGGGGCTGGGGCGCAGTAGGCTGGTTTTTGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTTTAGGGGAAGGGGGGCTGGGGCGCAGTAGGCTGGTTTTTGGA  300

seq1  CTACCTCACACCAGGGAGGATGGGGCCCTGCCCCTTGGATGCTGTAGCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCACACCAGGGAGGATGGGGCCCTGCCCCTTGGATGCTGTAGCAG  350

seq1  AGTGAGGAGGGGTGCCCACTTTAATGGGGAAAGTGTGTAGGAAAACCTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAGGGGTGCCCACTTTAATGGGGAAAGTGTGTAGGAAAACCTTT  400

seq1  TCCCCTTGTTCTGTAGGGTAGGGGTAGCCAGTATTGGTGCCAGCCTCCGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGTTCTGTAGGGTAGGGGTAGCCAGTATTGGTGCCAGCCTCCGA  450

seq1  CTCCTCATCTGCGTTTCTGTTTGCAGTTACTTGAATTTTTTTTAAAGGCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATCTGCGTTTCTGTTTGCAGTTACTTGAATTTTTTTTAAAGGCC  500

seq1  TTTTCTTGAAGGAAAAAAAATTCATTTTGGAGTAGCAATATGTAGAAGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGAAGGAAAAAAAATTCATTTTGGAGTAGCAATATGTAGAAGTT  550

seq1  GCAAATATTTTACAGAAAATCCCTGTGTGTCCCTCAGTCAGGTTTAGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATTTTACAGAAAATCCCTGTGTGTCCCTCAGTCAGGTTTAGTTT  600

seq1  TAGTGGGAATGTTTCCCGGTCGGGACCGAGCCGCCAGCACTCATGCAATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGAATGTTTCCCGGTCGGGACCGAGCCGCCAGCACTCATGCAATC  650

seq1  CTGTGAGATCTCTGTGACTGACCAGTCAGTGCTCAGTGGCCTTGTTTTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGATCTCTGTGACTGACCAGTCAGTGCTCAGTGGCCTTGTTTTTC  700

seq1  TTCCAGTTGCCACTTTTTTTTTTTTTTTTTAATTTGAGACTAGGTCTCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTGCCACTTTTTTTTTTTTTTTTTAATTTGAGACTAGGTCTCAC  750

seq1  TGTGTAGCCCTGGCTGTCCTAGAATTC  770
      |||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTAGAATTC  777


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