BAC Information

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BAC

Clone NameB6Ng01-275A20
Chromosome7 (Build37)
Map Location 109,332,367 - 109,457,198
singlet/doubletdoublet
Overlap geneNup98, Frag1, Rhog, Stim1
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10
Downstream geneRrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275A20.bB6Ng01-275A20.g
ACCGA076193GA076194
length1,1081,118
definitionB6Ng01-275A20.b B6Ng01-275A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,332,367 - 109,333,483)(109,456,085 - 109,457,198)
sequence
gaattcatgtgctctaaggtgttctggtataagctactggtataagagcc
tgctatcaaagcaaacaacataagaaaccacctcacttccttctaaatgc
tttataaacttaacccatcgtgaatgaggctgaagcaagaagatcatgag
tttcaggtcagcctggactgcagagtgatatccagggtcataaacacaat
gatgaaacacaatcatgagttttacaattctgggtatttgatctattgag
taaataaagctcagatataagggctttaacctcgttcttctacagaagga
caatcagctactgtactcatgctggaaaatcagttgtatataaatgtgag
gattcgtttctgtattcaattttactcatgtgcttcattgaatttttgag
attagtctcatgcagcccagactggacttgaaccagatgcatagtcaatg
ttatccttgaactcttgatcctcttcccaactgccaacattacagcatat
ccagttccatatctgtccctagaatgccttaaccactgtctttaccttca
gtattgtttcaacaatctcatccatgtacataacgtattgtgatcataca
tacacgctccattctcattattttcttcccactccatctgaatcaaaaca
tcaatatcacaaggcatatagcttcaagacagccacctgacacccactag
gcaagctcttagtgaaagaaaactatgtcagaaaggatgacttactcaac
aaaatctcaatgtactcactggtctgatacaaaatccaggtcttcattat
ttgaaagaaaggtttgttttcttccctatactgaataacctccattcaaa
agaaatgcagtagagatagcacttataagttaaacatgactactagtccc
attacttagcttcataaataagacctggagttaactaaaggtctgtttct
taccatagtattggtgcttggctgtccaaaggtgctgggtattacaaaga
aaagccagtattcgggggtggttgtagctgccaaatggttgctgagagac
tggttagtctgtgatctgttggcaaagagaccacctgatttgttccaatc
agttgtgc
gaattcaacttttccagctgtgttatcacgactttctcttttcaaaatga
tgatctagatttaaaccaactacatacaattatcaaaatttcattctggg
tatggtgatgcatgcctttaagcctagcacttgggaggcagaagcaggca
gatctctgtgagttcaaggccagcctggtctacagaatgagttccagaat
attcaaggctacataaagagatcttgtctcaaaacaaaacaaagcaaagc
aaaacaaacaaagcttcataacaatattgttttcaactaatgggtttttt
tcccttttaatgtgtagtggtgttctgcttgcatgtatatctgtgtgaag
gtgccttatcctttagaaatggagttacagacagttgtgagctgctatgt
gggtgctgggaattgaacctaggtcctctggaagagcagctagtgctctt
aactactgagccatctctccagtgtcattgaactaatatttctaatgagc
aataaaataaagtaaatgcatgagtatttaagcactagaccctgctgcca
ataacctatttaggtactattctgttgctggatcctctggggctagaatt
acagatggttgtgagatgccaggaaaaggctgagaactgaacccagatcc
tctgtaagagcagccagtgctcttaactactgagccatctctccagttcc
ctaggtgctactcttatgaccaaggtcatcactcattacacaagtttacg
ttctatgatgctatcaattaccaaagaatctatcagcaaaagcaaagtgt
actctcagcattggcataatttaagccaaatacaaagacttattatatat
ataaatgcacaatttccattaggcttattaagatattaaagggtaattta
aatttcttttgttcattcaagaacaagtatttactaagcatcccttgtcc
acctatagcactagtgacaaaatgaaaaaagacacagctatggtctcagg
cttctacacaaacaacatccttttactgcttcatgattttctagattcaa
agaccgtagccacccaaacccagaagaagttttaagaagaatggtgacac
ctctatgcctttatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109332367_109333483
seq2: B6Ng01-275A20.b_42_1149

seq1  GAATTCATGTGCTCTAAGGTGTTCTGGTATAAGCTACTGGTATAAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGCTCTAAGGTGTTCTGGTATAAGCTACTGGTATAAGAGCC  50

seq1  TGCTATCAAAGCAAACAACATAAGAAACCACCTCACTTCCTTCTAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCAAAGCAAACAACATAAGAAACCACCTCACTTCCTTCTAAATGC  100

seq1  TTTATAAACTTAACCCATCGTGAATGAGGCTGAAGCAAGAAGATCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTTAACCCATCGTGAATGAGGCTGAAGCAAGAAGATCATGAG  150

seq1  TTTCAGGTCAGCCTGGACTGCAGAGTGATATCCAGGGTCATAAACACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTCAGCCTGGACTGCAGAGTGATATCCAGGGTCATAAACACAAT  200

seq1  GATGAAACACAATCATGAGTTTTACAATTCTGGGTATTTGATCTATTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACACAATCATGAGTTTTACAATTCTGGGTATTTGATCTATTGAG  250

seq1  TAAATAAAGCTCAGATATAAGGGCTTTAACCTCGTTCTTCTACAGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGCTCAGATATAAGGGCTTTAACCTCGTTCTTCTACAGAAGGA  300

seq1  CAATCAGCTACTGTACTCATGCTGGAAAATCAGTTGTATATAAATGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCTACTGTACTCATGCTGGAAAATCAGTTGTATATAAATGTGAG  350

seq1  GATTCGTTTCTGTATTCAATTTTACTCATGTGCTTCATTGAATTTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGTTTCTGTATTCAATTTTACTCATGTGCTTCATTGAATTTTTGAG  400

seq1  ATTAGTCTCATGCAGCCCAGACTGGACTTGAACCAGATGCATAGTCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTCATGCAGCCCAGACTGGACTTGAACCAGATGCATAGTCAATG  450

seq1  TTATCCTTGAACTCTTGATCCTCTTCCCAACTGCCAACATTACAGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTGAACTCTTGATCCTCTTCCCAACTGCCAACATTACAGCATAT  500

seq1  CCAGTTCCATATCTGTCCCTAGAATGCCTTAACCACTGTCTTTACCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCATATCTGTCCCTAGAATGCCTTAACCACTGTCTTTACCTTCA  550

seq1  GTATTGTTTCAACAATCTCATCCATGTACATAACGTATTGTGATCATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTTCAACAATCTCATCCATGTACATAACGTATTGTGATCATACA  600

seq1  TACACGCTCCATTCTCATTATTTTCTTCCCACTCCATCTGAATCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCTCCATTCTCATTATTTTCTTCCCACTCCATCTGAATCAAAACA  650

seq1  TCAATATCACAAGGCATATAGCTTCAAGACAGCCACCTGACACCCACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATCACAAGGCATATAGCTTCAAGACAGCCACCTGACACCCACTAG  700

seq1  GCAAGCTCTTAGTGAAAGAAAACTATGTCAGAAAGGATGACTTACTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTCTTAGTGAAAGAAAACTATGTCAGAAAGGATGACTTACTCAAC  750

seq1  AAAATCTCAATGTACTCACTGGTCTGATACAAAATCCAGGTCTTCATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCAATGTACTCACTGGTCTGATACAAAATCCAGGTCTTCATTAT  800

seq1  TTGAAAGAAAGGTTTGTTTTCTTCCCTATACTGAATAACCTCCATTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAAAGGTTTGTTTTCTTCCCTATACTGAATAACCTCCATTCAAA  850

seq1  AGAAATGCAGTAGAGATAGCACTTATAAGTTAAACATGACTACTAGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCAGTAGAGATAGCACTTATAAGTTAAACATGACTACTAGTCCC  900

seq1  ATTACTTAGCTTCATAAATAAGACCTGGAGTTAACTAAGGGTCTGTTTCT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTACTTAGCTTCATAAATAAGACCTGGAGTTAACTAAAGGTCTGTTTCT  950

seq1  TACCATAGTATTGGTGCTTGGCTGTCCAAGGGTGCT-GGTATTACCAAAG  999
      ||||||||||||||||||||||||||||| |||||| ||||||||  || 
seq2  TACCATAGTATTGGTGCTTGGCTGTCCAAAGGTGCTGGGTATTAC--AAA  998

seq1  GAAAAGCCAGTATTC-GGGGTGGTTGTAGCCTGGCCAAATGGTTTGCTGA  1048
      ||||||||||||||| ||||||||||||||   ||||||||| |||||| 
seq2  GAAAAGCCAGTATTCGGGGGTGGTTGTAGC--TGCCAAATGG-TTGCTG-  1044

seq1  AGAGACTGG-TAGTCTGTTGATTCTGTTGGCCAAAGAGACCACCTGGATT  1097
      ||||||||| ||||||| ||| |||||||| |||||||||||||| ||||
seq2  AGAGACTGGTTAGTCTG-TGA-TCTGTTGG-CAAAGAGACCACCT-GATT  1090

seq1  TGTTCCAAATCCAGTTGTGC  1117
      ||||||||   |||||||||
seq2  TGTTCCAA--TCAGTTGTGC  1108

seq1: chr7_109456085_109457198
seq2: B6Ng01-275A20.g_71_1188 (reverse)

seq1  GTTCATAAAGCAATAAGAGTGTCAC--ATCTTC-TAAAAC-TCTTCTGGT  46
      ||||||||||  |||   |||||||   ||||| |||||| |||||||| 
seq2  GTTCATAAAGGCATAGAGGTGTCACCATTCTTCTTAAAACTTCTTCTGGG  50

seq1  TTTGGTGGCCTACGGTCTTTGGAATCTTAGAAATCCATGAAAGCAGTAAA  96
      |||||  | ||||||||||| ||||| ||||||  |||| ||||||||||
seq2  TTTGGGTGGCTACGGTCTTT-GAATC-TAGAAAATCATG-AAGCAGTAAA  97

seq1  AGGATG-TGTTTGTGTAGAAGCCCTGAGACCATAGCTGTGTC-TTTTTCA  144
      |||||| |||||||||||||| |||||||||||||||||||| |||||||
seq2  AGGATGTTGTTTGTGTAGAAG-CCTGAGACCATAGCTGTGTCTTTTTTCA  146

seq1  TTTTGTCACTAGTGCTTATAGGTGGACAA-GGATGCTTAGTAAATACTTG  193
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TTTTGTCACTAGTGC-TATAGGTGGACAAGGGATGCTTAGTAAATACTTG  195

seq1  TTCTTGAATGAACAAAAG-AATTTAAATTA-CCTTTAATATCTTAATAAG  241
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TTCTTGAATGAACAAAAGAAATTTAAATTACCCTTTAATATCTTAATAAG  245

seq1  CCTAATGGAAATTGTGCATTTATATATATAATAAGTCTTTGTATTTGGCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGAAATTGTGCATTTATATATATAATAAGTCTTTGTATTTGGCT  295

seq1  TAAATTATGCCAATGCTGAGAGTACACTTTGCTTTTGCTGATAGATTCTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGCCAATGCTGAGAGTACACTTTGCTTTTGCTGATAGATTCTT  345

seq1  TGGTAATTGATAGCATCATAGAACGTAAACTTGTGTAATGAGTGATGACC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTGATAGCATCATAGAACGTAAACTTGTGTAATGAGTGATGACC  395

seq1  TTGGTCATAAGAGTAGCACCTAGGGAACTGGAGAGATGGCTCAGTAGTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATAAGAGTAGCACCTAGGGAACTGGAGAGATGGCTCAGTAGTTA  445

seq1  AGAGCACTGGCTGCTCTTACAGAGGATCTGGGTTCAGTTCTCAGCCTTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGGCTGCTCTTACAGAGGATCTGGGTTCAGTTCTCAGCCTTTT  495

seq1  CCTGGCATCTCACAACCATCTGTAATTCTAGCCCCAGAGGATCCAGCAAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATCTCACAACCATCTGTAATTCTAGCCCCAGAGGATCCAGCAAC  545

seq1  AGAATAGTACCTAAATAGGTTATTGGCAGCAGGGTCTAGTGCTTAAATAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTACCTAAATAGGTTATTGGCAGCAGGGTCTAGTGCTTAAATAC  595

seq1  TCATGCATTTACTTTATTTTATTGCTCATTAGAAATATTAGTTCAATGAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATTTACTTTATTTTATTGCTCATTAGAAATATTAGTTCAATGAC  645

seq1  ACTGGAGAGATGGCTCAGTAGTTAAGAGCACTAGCTGCTCTTCCAGAGGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGATGGCTCAGTAGTTAAGAGCACTAGCTGCTCTTCCAGAGGA  695

seq1  CCTAGGTTCAATTCCCAGCACCCACATAGCAGCTCACAACTGTCTGTAAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTTCAATTCCCAGCACCCACATAGCAGCTCACAACTGTCTGTAAC  745

seq1  TCCATTTCTAAAGGATAAGGCACCTTCACACAGATATACATGCAAGCAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTAAAGGATAAGGCACCTTCACACAGATATACATGCAAGCAGA  795

seq1  ACACCACTACACATTAAAAGGGAAAAAAACCCATTAGTTGAAAACAATAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTACACATTAAAAGGGAAAAAAACCCATTAGTTGAAAACAATAT  845

seq1  TGTTATGAAGCTTTGTTTGTTTTGCTTTGCTTTGTTTTGTTTTGAGACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAAGCTTTGTTTGTTTTGCTTTGCTTTGTTTTGTTTTGAGACAA  895

seq1  GATCTCTTTATGTAGCCTTGAATATTCTGGAACTCATTCTGTAGACCAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTTATGTAGCCTTGAATATTCTGGAACTCATTCTGTAGACCAGG  945

seq1  CTGGCCTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCCAAGTGCTAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCCAAGTGCTAG  995

seq1  GCTTAAAGGCATGCATCACCATACCCAGAATGAAATTTTGATAATTGTAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGGCATGCATCACCATACCCAGAATGAAATTTTGATAATTGTAT  1045

seq1  GTAGTTGGTTTAAATCTAGATCATCATTTTGAAAAGAGAAAGTCGTGATA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGTTTAAATCTAGATCATCATTTTGAAAAGAGAAAGTCGTGATA  1095

seq1  ACACAGCTGGAAAAGTTGAATTC  1114
      |||||||||||||||||||||||
seq2  ACACAGCTGGAAAAGTTGAATTC  1118