BAC Information

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BAC

Clone NameB6Ng01-275N24
Chromosome7 (Build37)
Map Location 71,326,347 - 71,410,288
singlet/doubletdoublet
Overlap geneTrpm1
Upstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneBB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275N24.bB6Ng01-275N24.g
ACCGA076799GA076800
length899820
definitionB6Ng01-275N24.b B6Ng01-275N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,409,391 - 71,410,288)(71,326,347 - 71,327,314)
sequence
gaattcactgttaaatatgctccttgctctcctcagtctactatgtaacc
acaatgcctatgtgacagtcaaacgtgaaagccttcaacaaacatcacag
aaagagatagtgcagctgtgcacacagctaaatggaaattggaaaaagta
gagataggcatctttcctctgccatcttctatacttatctgcccctcctt
attagctaattaagagtacagctcgacagctattcatacatgaagaaaga
acccccaaagtcattgtttccttgtttcccttgtgctgattaccccccta
gccctccatcccaccaccctgaatctggtccagcctctgggaagcatccc
actgtggcctctcacaccttctctaaggctactctttcctgaacctgagg
aggaaatacgttgtcaagcaacagacctcagaagaagctgccagatgctc
ttagactccacaacctgctgctacttagagaaagcaaagtttcagccact
ctgccagatggaaggaggttgacctgaggtgcggttctttttgtttttta
ccccttttctccatgctatctatactcaaaaagaaggggaaatgggtaga
gttcatttacttttgaaatgattaatgaaaataacaaattatgaatgcct
tagttacttttctattgctgtgataaaataccatgaccaaggcaatttct
tatgaaagaaattgtgtcatttgccttttagtttcagaaggttagagacc
atgatgatggagcaaaagaacagctgacagatcatatcttgatctacatc
catgaagggggatgtggggtggtggagaaagataagatcactgagaatga
cttgggctttaaaacctcattgtccacctcagtgtacacacttcctcca
gaattctttgtttagctctgtaccccatttttaatagggttatttgaatt
tctggagtccatctttttgagttctttatatatattggatattagtcctc
tatctgatttaggattgttaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgttttttgccttagagaagccaaaagcctgaat
ttttaatttctgaagatcttattgtctcccagttgggaaagtatctgtgc
ttttatttagtcatccccaggagaaccagataacctgagaaaccaccaat
ggtgtgggtcaatcttccaactgctccctcatctagccactcttaattgc
ctcttgtaattttcctaattcagaatcaaagatttttaaaaaaataataa
tttatttatatttcatgtgcattggtgttttgcctgcatgtatgtttacg
tgaaggtgtcagatcctctgaaactggaattacagacagttgtgagccac
caggtgggcactgggaattcaatacctgtcccctggaagagcagccagtg
ttcttgaccaccgagtcatctccccagcccctcgacccctcccccccaca
aatcaaacattttgaagttaccacttggcttcctttgttcatgatatgat
tttactttaaaatagtcattcccgcttctgctctagagtctctgatcact
agatgagacatggaagggcaatggaaaggcatcttgtttaatatgtaagt
aaatttcaaataggaactaccccctgctgccagtctcaggagtagcagag
ttctctcccctctcccgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71409391_71410288
seq2: B6Ng01-275N24.b_47_945 (reverse)

seq1  TGGAGGAGGTGTGT-CACTGGGGTGGACTATGAGGTTTTAAAAGCCCATG  49
      ||||||| |||||| ||||| ||||||| |||||||||| |||||||| |
seq2  TGGAGGAAGTGTGTACACTGAGGTGGACAATGAGGTTTT-AAAGCCCAAG  49

seq1  TCATTCTCAGTGATC-TCTCTTTCTCCACCACCCCACATCCCCCTTCATG  98
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  TCATTCTCAGTGATCTTATCTTTCTCCACCACCCCACATCCCCCTTCATG  99

seq1  GATGTAGATCAAGATATGATCTGTCAGCTGTTCTTTTGCTCCATCATCAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGATCAAGATATGATCTGTCAGCTGTTCTTTTGCTCCATCATCAT  149

seq1  GGTCTCTAACCTTCTGAAACTAAAAGGCAAATGACACAATTTCTTTCATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTAACCTTCTGAAACTAAAAGGCAAATGACACAATTTCTTTCATA  199

seq1  AGAAATTGCCTTGGTCATGGTATTTTATCACAGCAATAGAAAAGTAACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGCCTTGGTCATGGTATTTTATCACAGCAATAGAAAAGTAACTA  249

seq1  AGGCATTCATAATTTGTTATTTTCATTAATCATTTCAAAAGTAAATGAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCATAATTTGTTATTTTCATTAATCATTTCAAAAGTAAATGAAC  299

seq1  TCTACCCATTTCCCCTTCTTTTTGAGTATAGATAGCATGGAGAAAAGGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCATTTCCCCTTCTTTTTGAGTATAGATAGCATGGAGAAAAGGGG  349

seq1  TAAAAAACAAAAAGAACCGCACCTCAGGTCAACCTCCTTCCATCTGGCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAAAAGAACCGCACCTCAGGTCAACCTCCTTCCATCTGGCAG  399

seq1  AGTGGCTGAAACTTTGCTTTCTCTAAGTAGCAGCAGGTTGTGGAGTCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGAAACTTTGCTTTCTCTAAGTAGCAGCAGGTTGTGGAGTCTAA  449

seq1  GAGCATCTGGCAGCTTCTTCTGAGGTCTGTTGCTTGACAACGTATTTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTGGCAGCTTCTTCTGAGGTCTGTTGCTTGACAACGTATTTCCT  499

seq1  CCTCAGGTTCAGGAAAGAGTAGCCTTAGAGAAGGTGTGAGAGGCCACAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTTCAGGAAAGAGTAGCCTTAGAGAAGGTGTGAGAGGCCACAGT  549

seq1  GGGATGCTTCCCAGAGGCTGGACCAGATTCAGGGTGGTGGGATGGAGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTTCCCAGAGGCTGGACCAGATTCAGGGTGGTGGGATGGAGGGC  599

seq1  TAGGGGGGTAATCAGCACAAGGGAAACAAGGAAACAATGACTTTGGGGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGGTAATCAGCACAAGGGAAACAAGGAAACAATGACTTTGGGGGT  649

seq1  TCTTTCTTCATGTATGAATAGCTGTCGAGCTGTACTCTTAATTAGCTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCATGTATGAATAGCTGTCGAGCTGTACTCTTAATTAGCTAAT  699

seq1  AAGGAGGGGCAGATAAGTATAGAAGATGGCAGAGGAAAGATGCCTATCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGGCAGATAAGTATAGAAGATGGCAGAGGAAAGATGCCTATCTC  749

seq1  TACTTTTTCCAATTTCCATTTAGCTGTGTGCACAGCTGCACTATCTCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCCAATTTCCATTTAGCTGTGTGCACAGCTGCACTATCTCTTT  799

seq1  CTGTGATGTTTGTTGAAGGCTTTCACGTTTGACTGTCACATAGGCATTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGTTTGTTGAAGGCTTTCACGTTTGACTGTCACATAGGCATTGT  849

seq1  GGTTACATAGTAGACTGAGGAGAGCAAGGAGCATATTTAACAGTGAATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATAGTAGACTGAGGAGAGCAAGGAGCATATTTAACAGTGAATTC  899

seq1: chr7_71326347_71327314
seq2: B6Ng01-275N24.g_68_887

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGAATT  50

seq1  TCTGGAGTCCATCTTTTTGAGTTCTTTATATATATTGGATATTAGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCATCTTTTTGAGTTCTTTATATATATTGGATATTAGTCCTC  100

seq1  TATCTGATTTAGGATTGTTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAGGATTGTTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT  150

seq1  TTTGTCTTATTGACAGTGTTTTTTGCCTTAGAGAAGCCAAAAGCCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACAGTGTTTTTTGCCTTAGAGAAGCCAAAAGCCTGAAT  200

seq1  TTTTAATTTCTGAAGATCTTATTGTCTCCCAGTTGGGAAAGTATCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCTGAAGATCTTATTGTCTCCCAGTTGGGAAAGTATCTGTGC  250

seq1  TTTTATTTAGTCATCCCCAGGAGAACCAGATAACCTGAGAAACCACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAGTCATCCCCAGGAGAACCAGATAACCTGAGAAACCACCAAT  300

seq1  GGTGTGGGTCAATCTTCCAACTGCTCCCTCATCTAGCCACTCTTAATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGTCAATCTTCCAACTGCTCCCTCATCTAGCCACTCTTAATTGC  350

seq1  CTCTTGTAATTTTCCTAATTCAGAATCAAAGATTTTTAAAAAAATAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTAATTTTCCTAATTCAGAATCAAAGATTTTTAAAAAAATAATAA  400

seq1  TTTATTTATATTTCATGTGCATTGGTGTTTTGCCTGCATGTATGTTTACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATATTTCATGTGCATTGGTGTTTTGCCTGCATGTATGTTTACG  450

seq1  TGAAGGTGTCAGATCCTCTGAAACTGGAATTACAGACAGTTGTGAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGTCAGATCCTCTGAAACTGGAATTACAGACAGTTGTGAGCCAC  500

seq1  CAGGTGGGCACTGGGAATTCAATACCTGTCCCCTGGAAGAGCAGCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGCACTGGGAATTCAATACCTGTCCCCTGGAAGAGCAGCCAGTG  550

seq1  TTCTTGACCACCGAGTCATCTCCCCAGCCCCTCGACCCCTCCCCCCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACCACCGAGTCATCTCCCCAGCCCCTCGACCCCTCCCCCCCACA  600

seq1  AATCAAACATTTTGAAGTTACCACTTGGCTTCCTTTGTTCATGATATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACATTTTGAAGTTACCACTTGGCTTCCTTTGTTCATGATATGAT  650

seq1  TTTACTTTAAAATAGTCATTCCCGCTTCTGCTCTAGAGTCTCTGATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTAAAATAGTCATTCCCGCTTCTGCTCTAGAGTCTCTGATCACT  700

seq1  AGATGAGACATGGAAGGGCAATGGAAAGGCATCTTGTTTAATATGTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGACATGGAAGGGCAATGGAAAGGCATCTTGTTTAATATGTAAGT  750

seq1  AAATTTCAAATAGGAACTA-CCCCTGCTGCCAGTCTCAGGAGTAGCAGAG  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATTTCAAATAGGAACTACCCCCTGCTGCCAGTCTCAGGAGTAGCAGAG  800

seq1  TTCTCT-CCCTCTCCC-TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCT  847
      |||||| ||||||||| |||                              
seq2  TTCTCTCCCCTCTCCCGTCT------------------------------  820

seq1  CCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCC  897
                                                        
seq2  --------------------------------------------------  820

seq1  CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCT  947
                                                        
seq2  --------------------------------------------------  820

seq1  CTCCCTCTCCCTCTCCCGTCT  968
                           
seq2  ---------------------  820