BAC Information

Click to search

BAC

Clone NameB6Ng01-276M02
Chromosome7 (Build37)
Map Location 7,207,389 - 7,364,272
singlet/doubletdoublet
Overlap gene6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Upstream geneEG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179
Downstream geneVmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276M02.bB6Ng01-276M02.g
ACCGA077455GA077456
length5931,152
definitionB6Ng01-276M02.b B6Ng01-276M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,207,389 - 7,207,981)(7,363,122 - 7,364,272)
sequence
gaattcaaaccatctcactatgtttatcctgattttattttccatcacat
tgttttgttagaaattagccctgtattattactatttattatttttagta
catttacataatggagcattactcagctattaaaaagaatgaatttatga
aattcctaggcaaatggatggacctggaggctatcatcctgagtgaggta
tcccaatcacaaaggaactcacaatttgtactcactgagaagtggatatt
atcccagaaacttaggatacccaagatataagatacaatttgtgaaacac
atgaaactcaagaagaacgaagaccaaagtgtggacactttgccacttct
tagaattgggaacaaaagacccatggaaggagttacagtgacaaagtttg
gagctgtgtcaaaaggatggactatctaaaacctgccttatccagggttc
catcccataatcagcttccaaacgctgacaccattgcatatactagcaag
attttgctgaaaggacccagatatagctgtctcttgtgagactatgctgg
ggcctagcaaacacagaagtggatgctcacagtcagttattgg
gaattccattatgcatctccaaatttctattagcgtggggatgcacaata
gaaaagttattggtgatgacgtcatatctgatgtgtataactgagaagag
tttgaattcttgagatcagtggtgaaagaatacttgatttcaaatatgtc
ctttctttcttcctctatggtaatttcccgagctttctttgcaagaggac
ctgccaagtatcattcacacaaaggcctaaaaccagttgggtcttaaatc
caaggcaaaaattttgaactaaggtgtccattaacatatcaaactggaca
gtggcctccagtttctctcagcatccctctgtctctactacatataggtc
cctcctggctggcatgactccccaaactagccccaactttctagaccagg
tgatcccctggactttccttcttccagatcttctgacacctatataactc
agccacttataaccgtgttagtctcttcactcaggctgcccctcttggtt
ggtggcccctctttctcttttcagatcgcctatcctcacatggcccagct
tagggtcatgttcactctgtaactctcgcagaggtttcctgtctggtctg
gaactcactgtgacaggccagtttctaatcccagacattaacttgcctct
tccagcagttctgttatttaggagtgtttcagcaagcccggactttgagg
ctcaaggaaatactggcacatctataatcacaacactctccctaacagat
tgagtgtacagctccatcttgggaggtgtgtctacttcctggcacttcat
catgtctgaactacattgtacagaagacattgcactgagaatagccagag
aaataggcattttggtgaagacaaaataatgggaccttgacaataaaatt
tctaaagcagatctaactaagctttcctttggaatcagatttggatcaat
gtgtgaattgtgtgcagaatgttctttgaaactttttgggatctgtcagt
cacagaaaactagttttatcagtatggtcatggcacgaaaatggggagag
tgaagcgtctttcctccatcaggaaggtgcacctgaagtttctatagcca
atgtgaatctgatccaggctccaatgggggatgaccaatggctccaaggg
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7207389_7207981
seq2: B6Ng01-276M02.b_45_637

seq1  GAATTCAAACCATCTCACTATGTTTATCCTGATTTTATTTTCCATCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCATCTCACTATGTTTATCCTGATTTTATTTTCCATCACAT  50

seq1  TGTTTTGTTAGAAATTAGCCCTGTATTATTACTATTTATTATTTTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTAGAAATTAGCCCTGTATTATTACTATTTATTATTTTTAGTA  100

seq1  CATTTACATAATGGAGCATTACTCAGCTATTAAAAAGAATGAATTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATAATGGAGCATTACTCAGCTATTAAAAAGAATGAATTTATGA  150

seq1  AATTCCTAGGCAAATGGATGGACCTGGAGGCTATCATCCTGAGTGAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGGCAAATGGATGGACCTGGAGGCTATCATCCTGAGTGAGGTA  200

seq1  TCCCAATCACAAAGGAACTCACAATTTGTACTCACTGAGAAGTGGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCACAAAGGAACTCACAATTTGTACTCACTGAGAAGTGGATATT  250

seq1  ATCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGTGAAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGTGAAACAC  300

seq1  ATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCACTTCT  350

seq1  TAGAATTGGGAACAAAAGACCCATGGAAGGAGTTACAGTGACAAAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGGGAACAAAAGACCCATGGAAGGAGTTACAGTGACAAAGTTTG  400

seq1  GAGCTGTGTCAAAAGGATGGACTATCTAAAACCTGCCTTATCCAGGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTCAAAAGGATGGACTATCTAAAACCTGCCTTATCCAGGGTTC  450

seq1  CATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATATACTAGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATATACTAGCAAG  500

seq1  ATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCTGG  550

seq1  GGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGTTATTGG  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGTTATTGG  593

seq1: chr7_7363122_7364272
seq2: B6Ng01-276M02.g_66_1217 (reverse)

seq1  GGCCC-TGGAG-CATT-GTCATCCCCCATTGAAGCCTGGATCAGA-TCAC  46
      ||||| ||||| |||| |||||||||||||| ||||||||||||| ||||
seq2  GGCCCTTGGAGCCATTGGTCATCCCCCATTGGAGCCTGGATCAGATTCAC  50

seq1  ATGGGTTATAGAAAACCTCAGTTGCACCTCCTTGATGGAGGAAAGACGCT  96
      || || ||||| |||| |||| ||||||| | ||||||||||||||||||
seq2  ATTGGCTATAG-AAACTTCAGGTGCACCTTCCTGATGGAGGAAAGACGCT  99

seq1  TCAACTCT-CCCAATTTCGTGCCATGACCAATACTGATAAAACTAGTTTT  145
      || ||||| |||| ||||||||||||||| ||||||||||||||||||||
seq2  TC-ACTCTCCCCATTTTCGTGCCATGACC-ATACTGATAAAACTAGTTTT  147

seq1  CTGTGACTGACAGAT-CCAAAAAGTTTCAAAGAACCTTCTGCACACAATT  194
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CTGTGACTGACAGATCCCAAAAAGTTTCAAAGAACATTCTGCACACAATT  197

seq1  CACACATTGATCCAAATCTGATTTCCAAAGGAAAGCTTAGTTAGATCTGC  244
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACACATTGATCCAAATCTGA-TTCCAAAGGAAAGCTTAGTTAGATCTGC  246

seq1  TTTAGAAATTTTATTGTCAAGGTCCCATTATTTTGTCTTCACCAAAATGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATTTTATTGTCAAGGTCCCATTATTTTGTCTTCACCAAAATGC  296

seq1  CTATTTTCTCTGGCTATTCTCAGTGCAATGTCTTCTGTACAATGTAGTTC  344
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA-TTTCTCTGGCTATTCTCAGTGCAATGTCTTCTGTACAATGTAGTTC  345

seq1  AGACATGATGAAGTGCCAGGAAGTAGACACACCTCCCAAGATGGAGCTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGATGAAGTGCCAGGAAGTAGACACACCTCCCAAGATGGAGCTGT  395

seq1  ACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTGCCAGTATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTGCCAGTATTT  445

seq1  CCTTGAGCCTCAAAGTCCGGGCTTGCTGAAACACTCCTAAATAACAGAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCCTCAAAGTCCGGGCTTGCTGAAACACTCCTAAATAACAGAAC  495

seq1  TGCTGGAAGAGGCAAGTTAATGTCTGGGATTAGAAACTGGCCTGTCACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAAGAGGCAAGTTAATGTCTGGGATTAGAAACTGGCCTGTCACAG  545

seq1  TGAGTTCCAGACCAGACAGGAAACCTCTGCGAGAGTTACAGAGTGAACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGACCAGACAGGAAACCTCTGCGAGAGTTACAGAGTGAACAT  595

seq1  GACCCTAAGCTGGGCCATGTGAGGATAGGCGATCTGAAAAGAGAAAGAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAAGCTGGGCCATGTGAGGATAGGCGATCTGAAAAGAGAAAGAGG  645

seq1  GGCCACCAACCAAGAGGGGCAGCCTGAGTGAAGAGACTAACACGGTTATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAACCAAGAGGGGCAGCCTGAGTGAAGAGACTAACACGGTTATA  695

seq1  AGTGGCTGAGTTATATAGGTGTCAGAAGATCTGGAAGAAGGAAAGTCCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGAGTTATATAGGTGTCAGAAGATCTGGAAGAAGGAAAGTCCAG  745

seq1  GGGATCACCTGGTCTAGAAAGTTGGGGCTAGTTTGGGGAGTCATGCCAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCACCTGGTCTAGAAAGTTGGGGCTAGTTTGGGGAGTCATGCCAGC  795

seq1  CAGGAGGGACCTATATGTAGTAGAGACAGAGGGATGCTGAGAGAAACTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGACCTATATGTAGTAGAGACAGAGGGATGCTGAGAGAAACTGG  845

seq1  AGGCCACTGTCCAGTTTGATATGTTAATGGACACCTTAGTTCAAAATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTGTCCAGTTTGATATGTTAATGGACACCTTAGTTCAAAATTTT  895

seq1  TGCCTTGGATTTAAGACCCAACTGGTTTTAGGCCTTTGTGTGAATGATAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGATTTAAGACCCAACTGGTTTTAGGCCTTTGTGTGAATGATAC  945

seq1  TTGGCAGGTCCTCTTGCAAAGAAAGCTCGGGAAATTACCATAGAGGAAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGTCCTCTTGCAAAGAAAGCTCGGGAAATTACCATAGAGGAAGA  995

seq1  AAGAAAGGACATATTTGAAATCAAGTATTCTTTCACCACTGATCTCAAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGACATATTTGAAATCAAGTATTCTTTCACCACTGATCTCAAGA  1045

seq1  ATTCAAACTCTTCTCAGTTATACACATCAGATATGACGTCATCACCAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACTCTTCTCAGTTATACACATCAGATATGACGTCATCACCAATA  1095

seq1  ACTTTTCTATTGTGCATCCCCACGCTAATAGAAATTTGGAGATGCATAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTATTGTGCATCCCCACGCTAATAGAAATTTGGAGATGCATAAT  1145

seq1  GGAATTC  1151
      |||||||
seq2  GGAATTC  1152