BAC Information

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BAC

Clone NameB6Ng01-276P02
Chromosome7 (Build37)
Map Location 16,171,516 - 16,172,520
singlet/doubletsinglet
Overlap genenone
Upstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1
Downstream geneLOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P02.bB6Ng01-276P02.g
ACCGA077593GA077594
length8801,028
definitionB6Ng01-276P02.b B6Ng01-276P02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaaatgttatgcctggttcttcctcccagactcttcctcaca
gaaataagtctcagattaaaaaaatattttaaaataccatgcctagggct
ggaaaatggctctgtggttctgagcactgactgctcttccagaggtccta
aatcaattcccagcaaccaaatggtggctcacaaccatctgtgaagggac
gtaaggctctctgctggtgtgtctgaagacagctatagtgtactcatata
cataaaataaatattaaaaaataccatgcctataaagtttagctcctctt
tgactagatcataacttagatgactcaattgtattaccctaccttcttcc
atgtggttgattgcctgtgttcaggtactatgcatctgtcctccctgacc
cccacatcttcctgaagacatgtgtattaactcacctggattttcaacac
tcaggagaagcaagaagatggcatgaaacactgtgacaacctataatcca
tgctttacctgatgtgaagagcaagaaagatactattgctttgatattga
tggatgaagactcgcagtgaagaggaaggtgtatggaaggcttctgcaat
aacaggtattcatatgccaacttaccccgcctcccaagaaagtagcatac
tagtaatagaggcactgaagagaacacttaagtgggttgggatacagaaa
tgtacctttccacaatgggtgagtaaatgtaagaggtagatggagaaagg
gtatatttctgtttattgggaaagtccattgaagattatgttccccttac
tccagtgaacaattctgattgacagaaatttgtccctttttataattttt
ttttttttcacttttttggggaagggggag
gaattccacataaaaccagacatagtgaaacatatggaagagaaagtagg
gaaaagcctcgaagatattggtacagggggaaaaaaatcctgaatagatc
agcaatggtttgtgctgttaagatcgagaaacgacaaatgagaccgcatg
aaattgcaaagcttctgcaaggcaaaagacacagtcaataagacaaaaaa
ggccaccaacagattgagaaaggatctttacctatcctaaatcagagagg
ggactgaaatccaatatatataaagaaatcaagaaggtggactaccaaaa
atcaaataatcccattaaaaaatggggctcagagctaaaaaagaaatctc
acctgaagaatacccaatggctgagaagatcctgaaaaaatgttcaacat
ccttaatcatcaggaaatgcaaatcaaaacaaccctgagattccacctca
caccagtcagaatggctaagagcgtgctcttgtagtatgatgggtataca
tgtgaataagagtgtggggaggaaaaagattatgattacataaatattca
tctctctagatgcatatttgtaattttgaggttgttttattctgtgtagc
tctatttgtcctgtaaagtggtatatagagaaaggcggtttagaagtcac
ggagatgacctgcctctgactcctgagtactttgaattaaggtataccgc
cagcaaggctgaggcaatgtattgtaggaagttttcccctaaagtagcca
ggaaatttatttttggggggagaaactagacaccttatagagtgtgaaag
acaacttccctcaggtgacagacactgactttacaaattaaacaaaccaa
aaaaaaatgtaattcaatcaaaaagacaaggacttctctagggtgggggc
caaaatcccagtggtaactgaagggtgtgtttatcctattggaattttga
aggtccacagaattgggtagggagccaaaaagtggggttggaagcctttg
atgtcctcgccctgaataaggtatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16171516_16172520
seq2: B6Ng01-276P02.g_68_1095

seq1  GAATTCCACATAAAACCAGACATAGTGAAACATATGGAAGAGAAAGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATAAAACCAGACATAGTGAAACATATGGAAGAGAAAGTAGG  50

seq1  GAAAAGCCTCGAAGATATTGGTACAGGGGGAAAAAAATCCTGAATAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCTCGAAGATATTGGTACAGGGGGAAAAAAATCCTGAATAGATC  100

seq1  AGCAATGGTTTGTGCTGTTAAGATCGAGAAACGACAAATGAGACCGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGTTTGTGCTGTTAAGATCGAGAAACGACAAATGAGACCGCATG  150

seq1  AAATTGCAAAGCTTCTGCAAGGCAAAAGACACAGTCAATAAGACAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCAAAGCTTCTGCAAGGCAAAAGACACAGTCAATAAGACAAAAAA  200

seq1  GGCCACCAACAGATTGAGAAAGGATCTTTACCTATCCTAAATCAGAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAACAGATTGAGAAAGGATCTTTACCTATCCTAAATCAGAGAGG  250

seq1  GGACTGAAATCCAATATATATAAAGAAATCAAGAAGGTGGACTACCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAATCCAATATATATAAAGAAATCAAGAAGGTGGACTACCAAAA  300

seq1  ATCAAATAATCCCATTAAAAAATGGGGCTCAGAGCTAAAAAAGAAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAATCCCATTAAAAAATGGGGCTCAGAGCTAAAAAAGAAATCTC  350

seq1  ACCTGAAGAATACCCAATGGCTGAGAAGATCCTGAAAAAATGTTCAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGAATACCCAATGGCTGAGAAGATCCTGAAAAAATGTTCAACAT  400

seq1  CCTTAATCATCAGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCATCAGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA  450

seq1  CACCAGTCAGAATGGCTAAGAGCGTGCTCTTGTAGTATGATGGGTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCAGAATGGCTAAGAGCGTGCTCTTGTAGTATGATGGGTATACA  500

seq1  TGTGAATAAGAGTGTGGGGAGGAAAAAGATTATGATTACATAAATATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAGAGTGTGGGGAGGAAAAAGATTATGATTACATAAATATTCA  550

seq1  TCTCTCTAGATGCATATTTGTAATTTTGAGGTTGTTTTATTCTGTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGATGCATATTTGTAATTTTGAGGTTGTTTTATTCTGTGTAGC  600

seq1  TCTATTTGTCCTGTAAAGTGGTATATAGAGAAAGGCGGTTTAGAAGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTCCTGTAAAGTGGTATATAGAGAAAGGCGGTTTAGAAGTCAC  650

seq1  GGAGATGACCTGCCTCTGACTCCTGAGTACTTTGAATTAAGGTATACCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACCTGCCTCTGACTCCTGAGTACTTTGAATTAAGGTATACCGC  700

seq1  CAGCAAGGCTGAGGCAATGTATTGTAGGAAGTTTTCCCCT-AAGTAGCCA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCAAGGCTGAGGCAATGTATTGTAGGAAGTTTTCCCCTAAAGTAGCCA  750

seq1  GG-AATTTATTTTT-GGGGGAG-AACTAGACACCTTATAGAGTGTG-AAG  795
      || ||||||||||| ||||||| ||||||||||||||||||||||| |||
seq2  GGAAATTTATTTTTGGGGGGAGAAACTAGACACCTTATAGAGTGTGAAAG  800

seq1  ACAACTTCCCTCA-GTGACAGACACTGAC-TTACAAA-TAAACAAAAC-A  841
      ||||||||||||| ||||||||||||||| ||||||| |||||||| | |
seq2  ACAACTTCCCTCAGGTGACAGACACTGACTTTACAAATTAAACAAACCAA  850

seq1  AAAAAAATGTAATTCAATCAAAAAGACAAGGAC-TCTCTAGGGT-GGGGC  889
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  AAAAAAATGTAATTCAATCAAAAAGACAAGGACTTCTCTAGGGTGGGGGC  900

seq1  CAAAATCCCAGTGG-CACTGAAGGGTGTGTTTAT-CTATTG--AATTTGA  935
      ||||||||||||||  |||||||||||||||||| ||||||  | |||||
seq2  CAAAATCCCAGTGGTAACTGAAGGGTGTGTTTATCCTATTGGAATTTTGA  950

seq1  AGGTCCACAGAGTGGG---AGGAGCCAAAGAGTGGG--TGGA--GCTTTG  978
      ||||||||||| | ||    ||||||||| ||||||  ||||   |||||
seq2  AGGTCCACAGAATTGGGTAGGGAGCCAAAAAGTGGGGTTGGAAGCCTTTG  1000

seq1  AGGTTCCTGCCCAG-ACAAGGTATATAA  1005
      | || |  |||| | | |||||||||||
seq2  ATGTCCTCGCCCTGAATAAGGTATATAA  1028