BAC Information

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BAC

Clone NameB6Ng01-278B17
Chromosome7 (Build37)7 (Build37)
Map Location 11,815,131 - 11,816,16612,056,041 - 12,057,206
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750
Downstream geneLOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278B17.bB6Ng01-278B17.g
ACCGA078439GA078440
length1,0151,147
definitionB6Ng01-278B17.b B6Ng01-278B17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,815,131 - 11,816,166)(12,056,041 - 12,057,206)
sequence
gaattccagacctacctaggccacagtgagacgcagtctcaaaaaacaaa
caaacaacaacaacaactatagaaaaatcaaacctcaagcaataaaaact
aaaactggaaggctatagatttttgtttttagcatagtgactactcttaa
aatatatctcttagctggctgactgtagggcatgcctttaatcccagcac
ctgggtggcagaggtgtgtgcatattgggagtgcagcggggaggggagga
gtgtgtctctgtgagttcaagactatgcaaagggaatacacccaggaaac
aagtgtgtttacttgtttttcaggtgttggtttgttttttccccttagct
ggagttggtctttacagttttactcacattgctaagtctgaaaagaacag
gaaagggtcactgctccaggcagtcaattccctttaaaagcagtgagcca
gctgggcactggtggagcccacctttaatccaggcacttgggaggcagag
caggcagatttctgagatcaaggccagactgggcttgaacagagtgagtt
ccagaactatacagggctacacagagaaaccctgtcttgaaaaacaaaaa
caaaaccgaacacccaaaaacaaaacagaacacccgaaacaaaacaaaac
gagacagaaagtagtgagcctttgtagaaacaaaatctttactgcataga
gagggttataatacttgcattggccttgtgttgtgggaacgcgtgccttt
gatgcatactctctggagccagaggcagaaagatcatttgatgtccatgc
agcctgctcgacataaggattatcaaatagcttagctctaaatatacgaa
cctctttgccgtcgagagatgttacaggctagtgccttacaaaaataact
gacacgtgcaggaagtatacaagttagttggagggtttaacattgtttgc
agaaggaccaaactgaagctttcatagagcttctttgaataggtcaataa
aattagtctaaagac
gaattcactatgaagcccatgtcttgtcatgtacccaatggacaccctgg
gctgtgcaaagtagactggcctcaagcagtacatctttgtgggatagttt
tacataatgtgcattcaaatgctgatttctgtgcaaggacacctaattgc
tattggctgttggcactgtcataattgttgaagcatctcctgtctcaagg
ttgtgaaaaattgttctccatcacctctgattggctaaatgtggagagct
tttgaggttgcttctaggaaggtcaacctgatcaacccctagacacggtg
agaatgggactttgtttattgcctgtttgattactttgactattgtctag
tttgttccttatttatgctttgttttttccttaactattttgtttatgcc
ttaggactggccatatactttgtgtgtacctagaatggtataaaagcaga
atggaaaaaaattaagcaggccttcagcttcagaactggctggggtcatg
ttacagtgtcgtccaattgtctttttcttatcaatccttgctcccttcct
gaagaacccattgactgactgagctggcttggtcagttaataaagatcta
aatagccaatagctgggcaggagagataaaataggattttccatcccagt
gagggctcaaaggtggagatagagatcaagaagggtgtcatgagggagtc
ttcatgaggagatgttggagcaggaggagccagggaaagactaagatggc
aggtaacaagacatgggactggaaaatagtccaggccataatagtcgggt
cagaatagtaaaatttctgtccagctgtaattctccaagcttctgtataa
atataatctctgtgtcattatgtgggaggaaccacagttacacttttaca
tgacaagtcctcctgcctcagccacttgtaggcacaccccactacacttg
gtggtttcttttctcttctttttcttctggagatgatctcacatgtaccc
tagctgactcatagacgcacttgttttcttgttccctgagtgttagtaaa
gctgtaccacatgccagaattacattgttctttagtacatttgtgtgtac
actgccatgtgtgtgcatgtttggactgcatgtttgtatgttactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11815131_11816166
seq2: B6Ng01-278B17.b_43_1057

seq1  GAATTCCAGACCTACCTAGGCCACAGTGAGACGCAGTCTCAAAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCTACCTAGGCCACAGTGAGACGCAGTCTCAAAAAACAAA  50

seq1  CAAACAACAACAACAACTATAGAAAAATCAAACCTCAAGCAATAAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAACAACAACTATAGAAAAATCAAACCTCAAGCAATAAAAACT  100

seq1  AAAACTGGAAGGCTATAGATTTTTGTTTTTAGCATAGTGACTACTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAAGGCTATAGATTTTTGTTTTTAGCATAGTGACTACTCTTAA  150

seq1  AATATATCTCTTAGCTGGCTGACTGTAGGGCATGCCTTTAATCCCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTCTTAGCTGGCTGACTGTAGGGCATGCCTTTAATCCCAGCAC  200

seq1  CTGGGTGGCAGAGGTGTGTGCATATTGGGAGTGCAGCGGGGAGGGGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGCAGAGGTGTGTGCATATTGGGAGTGCAGCGGGGAGGGGAGGA  250

seq1  GTGTGTCTCTGTGAGTTCAAGACTATGCAAAGGGAATACACCCAGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCTGTGAGTTCAAGACTATGCAAAGGGAATACACCCAGGAAAC  300

seq1  AAGTGTGTTTACTTGTTTTTCAGGTGTTGGTTTGTTTTTTCCCCTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTTACTTGTTTTTCAGGTGTTGGTTTGTTTTTTCCCCTTAGCT  350

seq1  GGAGTTGGTCTTTACAGTTTTACTCACATTGCTAAGTCTGAAAAGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGTCTTTACAGTTTTACTCACATTGCTAAGTCTGAAAAGAACAG  400

seq1  GAAAGGGTCACTGCTCCAGGCAGTCAATTCCCTTTAAAAGCAGTGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCACTGCTCCAGGCAGTCAATTCCCTTTAAAAGCAGTGAGCCA  450

seq1  GCTGGGCACTGGTGGAGCCCACCTTTAATCCAGGCACTTGGGAGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCACTGGTGGAGCCCACCTTTAATCCAGGCACTTGGGAGGCAGAG  500

seq1  CAGGCAGATTTCTGAGATCAAGGCCAGACTGGGCTTGAACAGAGTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGAGATCAAGGCCAGACTGGGCTTGAACAGAGTGAGTT  550

seq1  CCAGAACTATACAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTATACAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAA  600

seq1  CAAAACCAAACACCCAAAAACAAAACAAAACACCCAAAACAAAACAAAAC  650
      ||||||| ||||||||||||||||||| ||||||| ||||||||||||||
seq2  CAAAACCGAACACCCAAAAACAAAACAGAACACCCGAAACAAAACAAAAC  650

seq1  AAAAAAGAAAGTAGTGAGCCTTTGTAGAAACAAAATCTTTACTGCATAGG  700
       | | |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGACAGAAAGTAGTGAGCCTTTGTAGAAACAAAATCTTTACTGCATAGA  700

seq1  GAGGGTTATAATACTTGGATTGGCCTTGTGTTGTGGGAACACAGGCCTTT  750
      ||||||||||||||||| |||||||||||||||||||||| |  ||||||
seq2  GAGGGTTATAATACTTGCATTGGCCTTGTGTTGTGGGAACGCGTGCCTTT  750

seq1  GATCCCAGCTCTCTGGAGCCAGAGGCAGAAAGATCCATTTGAATTCCAGG  800
      ||| |   |||||||||||||||||||||||||| |||||||  |||| |
seq2  GATGCATACTCTCTGGAGCCAGAGGCAGAAAGAT-CATTTGATGTCCATG  799

seq1  CCAGCCTGGTCAACATAAGGATTATCAAAATACCTAGCCCTAAA-AAAGG  849
       ||||||| || |||||||||||||||||   | |||| ||||| | | |
seq2  -CAGCCTGCTCGACATAAGGATTATCAAATAGCTTAGCTCTAAATATACG  848

seq1  AACC-CCTTGGGGTGGAGAGGTGGCAGAGGGCAAGGGATGACAAACAAAA  898
      |||| | |||  || ||||| ||  | |||  |  |  | ||||| || |
seq2  AACCTCTTTGCCGTCGAGAGATGTTACAGGCTAGTGCCTTACAAA-AATA  897

seq1  AAGGACACTTGCAAAAAAGTCTTACAAGTTAGTTGGAGGGTTTAAACATT  948
      |  ||||| ||| |  ||||  ||||||||||||||||||||| |||| |
seq2  ACTGACACGTGC-AGGAAGT-ATACAAGTTAGTTGGAGGGTTT-AACA-T  943

seq1  TGTTTTGTAAGAAGGAACCAAACTGAAGCCTTTTCAATAGAGCTTCCATT  998
      |||||    |||||| |||||||||||||  |||| ||||||||||   |
seq2  TGTTT--GCAGAAGG-ACCAAACTGAAGC--TTTC-ATAGAGCTTC---T  984

seq1  TTGAACAGGGGTCAAATAAAATTTAAGTTCCTAAAGAC  1036
      ||||| |  |||| |||||||||  |||  ||||||||
seq2  TTGAATA--GGTC-AATAAAATT--AGT--CTAAAGAC  1015

seq1: chr7_12056041_12057206
seq2: B6Ng01-278B17.g_63_1209

seq1  GAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTGG  50

seq1  GCTGTGTAAAGTAGACTGGCCTCAAGCAGTACATCTTTGTGGGATAGTTT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAAAGTAGACTGGCCTCAAGCAGTACATCTTTGTGGGATAGTTT  100

seq1  TACATAATGTGCATTCAAATGCTGATTTCTGTGCAAGGACACCTAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGTGCATTCAAATGCTGATTTCTGTGCAAGGACACCTAATTGC  150

seq1  TATTGGCTGTTGGCAGTGTCATAATTGTTGAAGCATCTCCTGTCTCAAGG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTGGCTGTTGGCACTGTCATAATTGTTGAAGCATCTCCTGTCTCAAGG  200

seq1  TTGTGTAAAAATTATTCTCCATCACCTCTGATTGGCTAAATGTGGAGAGC  250
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTG-AAAAATTGTTCTCCATCACCTCTGATTGGCTAAATGTGGAGAGC  249

seq1  TTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACAAGGT  300
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGGT  299

seq1  GAGAATGGGACTTTGTTTATTGTCTGTTTGATTACTTTGATTATTGTCTA  350
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTGACTATTGTCTA  349

seq1  GTTTGTTCCTTATTTATGCTTTGTTTTTTCCTTAACTATTTTGTTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCCTTATTTATGCTTTGTTTTTTCCTTAACTATTTTGTTTATGC  399

seq1  CTTAGGACTGGCCATATGCTTTGTGTGTACCTAGAATGGTATAAAAGCAG  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTAGGACTGGCCATATACTTTGTGTGTACCTAGAATGGTATAAAAGCAG  449

seq1  AAAGGAAAAAAA-TAAACAGGCCTTCAGGTTCAGAACTGGCTGGGGTCAT  499
      || ||||||||| ||| ||||||||||| |||||||||||||||||||||
seq2  AATGGAAAAAAATTAAGCAGGCCTTCAGCTTCAGAACTGGCTGGGGTCAT  499

seq1  GTTACAGTGTTATCTAATTGTCTTTTTCTTATCAATCCTTGCTCCCTTCC  549
      ||||||||||  || |||||||||||||||||||||||||||||||||||
seq2  GTTACAGTGTCGTCCAATTGTCTTTTTCTTATCAATCCTTGCTCCCTTCC  549

seq1  TGAAGAACCCATTGACTTACTGAGCTGGTTTGGTCAGTTAATAAAGATCT  599
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TGAAGAACCCATTGACTGACTGAGCTGGCTTGGTCAGTTAATAAAGATCT  599

seq1  AAATAGCCAGTAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAG  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAG  649

seq1  TGAGGGGTCAAAGGTGGAGATAGAGATCAAGAAGGGAGTCATGAGGGAGT  699
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGGGCTCAAAGGTGGAGATAGAGATCAAGAAGGGTGTCATGAGGGAGT  699

seq1  CTTCATGAGGAGATGATGGAGCAGGAGGAGCCAGGGAAAGACTAAGATGG  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGATGG  749

seq1  CAGGTAACAAGACATGGGACTGGAAAATAGGCCAGGCCATCATAGTCAGT  799
      |||||||||||||||||||||||||||||| ||||||||| |||||| | 
seq2  CAGGTAACAAGACATGGGACTGGAAAATAGTCCAGGCCATAATAGTCGGG  799

seq1  TCAGAATAGATGAATTTCTGTCCAGCTGTAATTCTTGAAGCTTCTGTATA  849
      |||||||||   |||||||||||||||||||||||  |||||||||||||
seq2  TCAGAATAGTAAAATTTCTGTCCAGCTGTAATTCTCCAAGCTTCTGTATA  849

seq1  AATATAATTTCTGTGTCATTATGTGGGAGGACACAGAAGAAAGACCACAG  899
      |||||||| ||||||||||||||||||||||            |||||||
seq2  AATATAATCTCTGTGTCATTATGTGGGAGGA------------ACCACAG  887

seq1  TCACACTTTTACATGACACAGTCCTCCTGCCTCAGCCACTTGTAGGCACA  949
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTACACTTTTACATGACA-AGTCCTCCTGCCTCAGCCACTTGTAGGCACA  936

seq1  CCCCACTATACT---TGGTTTCTTTT-TCTTCTTTTTC-TCTGGACAAAG  994
      |||||||| |||   ||||||||||| ||||||||||| |||||  | | 
seq2  CCCCACTACACTTGGTGGTTTCTTTTCTCTTCTTTTTCTTCTGG--AGAT  984

seq1  GATCTCACTATGTAGCCCCAGCTGAACTCATAGCCGCACCTGCTT--CTG  1042
      |||||||| ||||| ||| ||||| |||||||| ||||| || ||   ||
seq2  GATCTCAC-ATGTA-CCCTAGCTG-ACTCATAGACGCACTTGTTTTCTTG  1031

seq1  TGCCCTGAGTGTTAGTAAAGGCTTGTACCACCATGCCCAGATATACATTT  1092
      | ||||||||||||||||||   ||||||| |||| |||||  |||||| 
seq2  TTCCCTGAGTGTTAGTAAAG--CTGTACCA-CATG-CCAGAATTACATT-  1076

seq1  GGTTTCTTTTAGTAAATATTGTGTGTA---TGTGCATGTGTGTGAATGTT  1139
       |||   ||||||| || |||||||||   ||  |||||||||| |||||
seq2  -GTT--CTTTAGTACAT-TTGTGTGTACACTG-CCATGTGTGTGCATGTT  1121

seq1  TTGACTGCATGTTTGTATGTATACTCC  1166
      | |||||||||||||||||| ||||||
seq2  TGGACTGCATGTTTGTATGT-TACTCC  1147