BAC Information

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BAC

Clone NameB6Ng01-278I06
Chromosome7 (Build37)
Map Location 64,786,437 - 64,961,143
singlet/doubletdoublet
Overlap geneGabrb3
Upstream genep, LOC100040839, Gabrg3, Gabra5
Downstream geneEG668807, LOC434189, Atp10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278I06.bB6Ng01-278I06.g
ACCGA078740GA078741
length1,1231,202
definitionB6Ng01-278I06.b B6Ng01-278I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,786,437 - 64,787,572)(64,959,965 - 64,961,143)
sequence
gaattctttacagctttattgcatggtacattattcctttgactttggtg
actgcttgaaaataagggctagtctctagctattagggtcttgaggttaa
catatttctattagttttacttttaagttaaatgtattgtttcatatctc
ttaaactgtgttttatttatgtgtatgtgtgtgcgtgtgccacatgttga
gggcagtgcctgtgaagccggagtatcaggcccctggagatggacataga
ttcacgtagatgtgagccacgtgaatgctgaaacagatctctgttccctt
ggaagagcaacactgagccacagcccaagactatatcctaaccgctgttc
tggtttttattctggttttgcctgcacacaatgtgttaatgtgtaccagc
gtcagtttctaccagcactaggaatgtgaactttctgtgctgagccattt
tactttaatttgtgcactgataaaaataactcctttattcttggaggaat
gtcgcctttcttataacaaaatgctctttattttctcattcggtactttt
tcttactgcgtacatatcttggtatcaaaacttcaactcctccaatcttt
aaaagttttgaaaagcaattgaggcaaacgcacaagcagatgccctgcgc
tggttctcccagaaatggcgtccctacggctagtagctaatgtgagttag
gcattatgactacgttaaatgccagctacacacttttgaaactgcatgaa
aaccaacctcactgacctaaaagtctcctgtgcttattcccctcagtccc
tggcaactgcttaccttggagggatctccctaagtcttcctttcacaatg
tcagcgtgatggagtcatacaatgcctagccttccaaactggcttcttcc
gggtacgcagcgtgttttcagcaagaggattgaaatatatggactgcatg
atgtttcctgggtcttcactggccaccgaggcataggtctacacatgtag
ttcataatcttctcctctacttctacatctctccgctgatgcggtcatct
cctggtcctctcccaacttcatcaggccatgtttttctcgttagaacatc
ctaaaatattagacttgtatttg

gaattcttttctttcaaagattgttctgaaggagatctagttgattcaaa
tagatagtgttctatgcatgggtaacagaagaaaatggaatcaaacaaga
atgttcagcctcacccccatccaccaataaaaacctttcgtctctgttgc
tgggtttcccagctgttacacctgcaccacaacacaaatggccctatttt
tagcttcgtataacttgagtaaaatctcagaacaattgggcataattact
atgcctcttactgtcagagtgcctttccgcagactttgaaggccagaaga
ccccccctgggcctgcatccctcaccaacaactttgcttctgccctcaca
aaagacaagagggcttcatctctaagataggtacctagcagactgttgtc
ataacgatctcatcccaaatttatccagaaagagggatggatttgtgtga
ggatgggaaggcactaccaagcacaggtgtgaatctgataccctgctgag
ctccagagtgaagaaattcttcatttgttttaaggtcattatgaaataag
tacaaggcttgcaaaaaataaaacaacatgagcaagaaaaaggaagaaaa
taaggaagatctgaaggagggagggatgaacagatgagcataaggaggga
gccatggagggaggcagagagggaggaaaggagagcgtaggtccaatgta
cccaagacacattagcctgggttactaaaggaaaatatcaaaacaaggac
actgaggtggatccagtctgtgagattacaccaactttacaggcatgtgc
ttgtctgtgtagttctacatgatctcatttgtaaagatctacaggtcagg
actcagaactgctctgtggccactggcctcctttccaggtataaccagtc
agcctgcctcccccctcattctaatgcatagccaatgtctgaggaattct
aacaacctttcaggtttccttatcttcagaaacctcatggtggctttctg
gtgtgggtttctacaaattacctagtcaagaggtcaaggtactgaccatc
tccaaagtataaaaaaagaatttgaactatttttccctttcatcggtaag
ggcttaagcatacatactatgtttttctagtcaatgcccacttcaattcc
tcagtcttctgaatagaccttctcatgttcatgtgcaaacatcttaactc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64786437_64787572
seq2: B6Ng01-278I06.b_44_1166

seq1  GAATTCTTTACAGCTTTATTGCATGGTACATTATTCCTTTGACTTTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAGCTTTATTGCATGGTACATTATTCCTTTGACTTTGGTG  50

seq1  ACTGCTTGAAAATAAGGGCTAGTCTCTAGCTATTAGGGTCTTGAGGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGAAAATAAGGGCTAGTCTCTAGCTATTAGGGTCTTGAGGTTAA  100

seq1  CATATTTCTATTAGTTTTACTTTTAAGTTAAATGTATTGTTTCATATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTATTAGTTTTACTTTTAAGTTAAATGTATTGTTTCATATCTC  150

seq1  TTAAACTGTGTTTTATTTATGTGTATGTGTGTGCGTGTGCCACATGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTGTTTTATTTATGTGTATGTGTGTGCGTGTGCCACATGTTGA  200

seq1  GGGCAGTGCCTGTGAAGCCGGAGTATCAGGCCCCTGGAGATGGACATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGCCTGTGAAGCCGGAGTATCAGGCCCCTGGAGATGGACATAGA  250

seq1  TTCACGTAGATGTGAGCCACGTGAATGCTGAAACAGATCTCTGTTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTAGATGTGAGCCACGTGAATGCTGAAACAGATCTCTGTTCCCTT  300

seq1  GGAAGAGCAACACTGAGCCACAGCCCAAGACTATATCCTAACCGCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAACACTGAGCCACAGCCCAAGACTATATCCTAACCGCTGTTC  350

seq1  TGGTTTTTATTCTGGTTTTGCCTGCACACAATGTGTTAATGTGTACCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTATTCTGGTTTTGCCTGCACACAATGTGTTAATGTGTACCAGC  400

seq1  GTCAGTTTCTACCAGCACTAGGAATGTGAACTTTCTGTGCTGAGCCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTCTACCAGCACTAGGAATGTGAACTTTCTGTGCTGAGCCATTT  450

seq1  TACTTTAATTTGTGCACTGATAAAAATAACTCCTTTATTCTTGGAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAATTTGTGCACTGATAAAAATAACTCCTTTATTCTTGGAGGAAT  500

seq1  GTCGCCTTTCTTATAACAAAATGCTCTTTATTTTCTCATTCGGTACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCTTTCTTATAACAAAATGCTCTTTATTTTCTCATTCGGTACTTTT  550

seq1  TCTTACTGCGTACATATCTTGGTATCAAAACTTCAACTCCTCCAATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGCGTACATATCTTGGTATCAAAACTTCAACTCCTCCAATCTTT  600

seq1  AAAAGTTTTGAAAAGCAATTGAGGCAAACGCACAAGCAGATGCCCTGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTGAAAAGCAATTGAGGCAAACGCACAAGCAGATGCCCTGCGC  650

seq1  TGGTTCTCCCAGAAATGGCGTCCCTACGGCTAGTAGCTAATGTGAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCCCAGAAATGGCGTCCCTACGGCTAGTAGCTAATGTGAGTTAG  700

seq1  GCATTATGACTACGTTAAATGCCAGCTACACACTTTTGAAACTGCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATGACTACGTTAAATGCCAGCTACACACTTTTGAAACTGCATGAA  750

seq1  AACCAACCTCACTGACCTAAAAGTCTCCTGTGCTTATTCCCCTCAGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCTCACTGACCTAAAAGTCTCCTGTGCTTATTCCCCTCAGTCCC  800

seq1  TGGCAACTGCTTACCTTGGAGGGATCTCCCTAAGTCTTCCTTTCAACAAT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGCAACTGCTTACCTTGGAGGGATCTCCCTAAGTCTTCCTTTC-ACAAT  849

seq1  GTCAGCGTGATGGAGTCATACAATGCCTAGCCTTCCAAACTGGCTTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGTGATGGAGTCATACAATGCCTAGCCTTCCAAACTGGCTTCTTC  899

seq1  CGGGTACGCAGCGTGTTTTCAGCAAGAGGATTGAAATATATGGACTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTACGCAGCGTGTTTTCAGCAAGAGGATTGAAATATATGGACTGCAT  949

seq1  GAATGTTTCCTGGGTCTTCACTGGCCAACCGAGGCATAGGTCTACCACAT  1000
      | |||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  G-ATGTTTCCTGGGTCTTCACTGGCC-ACCGAGGCATAGGTCTA-CACAT  996

seq1  GTAGTTCATAATCTTCTCCTCTACTTCTTACCATCTCTCCGCTGATGCGG  1050
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  GTAGTTCATAATCTTCTCCTCTACTTCT--ACATCTCTCCGCTGATGCGG  1044

seq1  TTCATTCTCCTGGTCCTTCTCACAACTTCCATCAGGCGCATG-TTTTCTC  1099
       ||| ||||||||||| |||| |||||| |||||||| |||| |||||||
seq2  -TCA-TCTCCTGGTCC-TCTCCCAACTT-CATCAGGC-CATGTTTTTCTC  1089

seq1  GTTTTAGAACATCCTAAAATATTAGAATTTGTATTTG  1136
      |  |||||||||||||||||||||| | |||||||||
seq2  G--TTAGAACATCCTAAAATATTAG-ACTTGTATTTG  1123


seq1: chr7_64959965_64961143
seq2: B6Ng01-278I06.g_66_1267 (reverse)

seq1  CAGAG-TAAGATGTT---GCATGACAATGAGAA-GTCTATCAAGGAGACT  45
      ||||| |||||||||    |||||  ||||||| ||||||  || |||||
seq2  CAGAGTTAAGATGTTTGCACATGAACATGAGAAGGTCTATTCAGAAGACT  50

seq1  GAGGAA-TGGAGTGCGCATTGACTAG-AAAACATAGTTTATGTA-GCTAA  92
      |||||| || |||| ||||||||||| |||||||||  |||||| ||| |
seq2  GAGGAATTGAAGTGGGCATTGACTAGAAAAACATAG--TATGTATGCTTA  98

seq1  AGCCCTTACAGATGAAA-GGAAAAATAG-TCAGAT--CTATTTTATAC-T  137
      ||||||||| ||||||| |||||||||| ||| ||   | |||||||| |
seq2  AGCCCTTACCGATGAAAGGGAAAAATAGTTCAAATTCTTTTTTTATACTT  148

seq1  TGGAGAT-GTCAGTACC-TGA-CTCTTGACTAGGTAATTTGTAGAAA-CC  183
      ||||||| ||||||||| ||| ||||||||||||||||||||||||| ||
seq2  TGGAGATGGTCAGTACCTTGACCTCTTGACTAGGTAATTTGTAGAAACCC  198

seq1  ACA-CAGAAAGCCA-CATGAGGTTTCTGAGATTAAGGAAA-CTGAAAGGT  230
      ||| |||||||||| ||||||||||||||   |||||||| |||||||||
seq2  ACACCAGAAAGCCACCATGAGGTTTCTGAAGATAAGGAAACCTGAAAGGT  248

seq1  TG-TAGAATTCCTCAGACATT-GCTATGCATTAGAATGA-GGGGGAGGCA  277
      || |||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TGTTAGAATTCCTCAGACATTGGCTATGCATTAGAATGAGGGGGGAGGCA  298

seq1  GGCTGACTGG-TATACCTGGAAAGGAGGCCAGTGGCCACAGAGCAGTTCT  326
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTGGTTATACCTGGAAAGGAGGCCAGTGGCCACAGAGCAGTTCT  348

seq1  GAGTCCTGA-CTGTAGATCTTTACAAATGAGATCATGTAGAACTACACAG  375
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGACCTGTAGATCTTTACAAATGAGATCATGTAGAACTACACAG  398

seq1  ACAAGCACATGCCTGTAAAGTTGGTGTAATCTCACAGACTGGATCCACCT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACATGCCTGTAAAGTTGGTGTAATCTCACAGACTGGATCCACCT  448

seq1  CAGTGTCCTTGTTTTGATATTTTCCTTTAGTAACCCAGGCTAATGTGTCT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTTGTTTTGATATTTTCCTTTAGTAACCCAGGCTAATGTGTCT  498

seq1  TGGGTACATTGGACCTACGCTCTCCTTTCCTCCCTCTCTGCCTCCCTCCA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACATTGGACCTACGCTCTCCTTTCCTCCCTCTCTGCCTCCCTCCA  548

seq1  TGGCTCCCTCCTTATGCTCATCTGTTCATCCCTCCCTCCTTCAGATCTTC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTCCTTATGCTCATCTGTTCATCCCTCCCTCCTTCAGATCTTC  598

seq1  CTTATTTTCTTCCTTTTTCTTGCTCATGTTGTTTTATTTTTTGCAAGCCT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTTCCTTTTTCTTGCTCATGTTGTTTTATTTTTTGCAAGCCT  648

seq1  TGTACTTATTTCATAATGACCTTAAAACAAATGAAGAATTTCTTCACTCT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTATTTCATAATGACCTTAAAACAAATGAAGAATTTCTTCACTCT  698

seq1  GGAGCTCAGCAGGGTATCAGATTCACACCTGTGCTTGGTAGTGCCTTCCC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAGCAGGGTATCAGATTCACACCTGTGCTTGGTAGTGCCTTCCC  748

seq1  ATCCTCACACAAATCCATCCCTCTTTCTGGATAAATTTGGGATGAGATCG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACACAAATCCATCCCTCTTTCTGGATAAATTTGGGATGAGATCG  798

seq1  TTATGACAACAGTCTGCTAGGTACCTATCTTAGAGATGAAGCCCTCTTGT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACAACAGTCTGCTAGGTACCTATCTTAGAGATGAAGCCCTCTTGT  848

seq1  CTTTTGTGAGGGCAGAAGCAAAGTTGTTGGTGAGGGATGCAGGCCCAGGG  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGAGGGCAGAAGCAAAGTTGTTGGTGAGGGATGCAGGCCCAGGG  898

seq1  GGGGTCTTCTGGCCTTCAAAGTCTGCGGAAAGGCACTCTGACAGTAAGAG  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTCTGGCCTTCAAAGTCTGCGGAAAGGCACTCTGACAGTAAGAG  948

seq1  GCATAGTAATTATGCCCAATTGTTCTGAGATTTTACTCAAGTTATACGAA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTAATTATGCCCAATTGTTCTGAGATTTTACTCAAGTTATACGAA  998

seq1  GCTAAAAATAGGGCCATTTGTGTTGTGGTGCAGGTGTAACAGCTGGGAAA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAATAGGGCCATTTGTGTTGTGGTGCAGGTGTAACAGCTGGGAAA  1048

seq1  CCCAGCAACAGAGACGAAAGGTTTTTATTGGTGGATGGGGGTGAGGCTGA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACAGAGACGAAAGGTTTTTATTGGTGGATGGGGGTGAGGCTGA  1098

seq1  ACATTCTTGTTTGATTCCATTTTCTTCTGTTACCCATGCATAGAACACTA  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGTTTGATTCCATTTTCTTCTGTTACCCATGCATAGAACACTA  1148

seq1  TCTATTTGAATCAACTAGATCTCCTTCAGAACAATCTTTGAAAGAAAAGA  1175
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGAATCAACTAGATCTCCTTCAGAACAATCTTTGAAAGAAAAGA  1198

seq1  ATTC  1179
      ||||
seq2  ATTC  1202


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