BAC Information

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BAC

Clone NameB6Ng01-279D02
Chromosome7 (Build37)
Map Location 134,776,111 - 134,960,003
singlet/doubletdoublet
Overlap geneBcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2
Upstream geneCcdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629
Downstream geneStx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279D02.bB6Ng01-279D02.g
ACCGA079236GA079237
length1,168377
definitionB6Ng01-279D02.b B6Ng01-279D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,776,111 - 134,777,269)(134,959,621 - 134,960,003)
sequence
gaattcaagcctacctcactgccaccccaccccacacacttatgctgcgg
tgctgtaactcagaatgttaggaaaatgctaattagctacagccctagcc
cctgacaggctgcccctagcttatggaaattgaagttctacccagtgtgg
tggcacacacctttcatctcacattctagaggcagaggcagaggcaaaag
gcaggctgaaatctgcgagctggagaccagcttatcccactacacagtga
attccaggacagccaaggctacacagagaaactcttatcaaaacagaaca
aaacaaaacagtccccaaacctagccaggcatggtggcacacaaccatta
atcccagcactcaggaggcagaggctaagggatctctgcgagttctaggc
tagcctggtctatagagtgagttccaggacagcaagggttacatggagag
accctgtctcaaacaaaacatcaaaaccaaaacaatacaaagaattgaag
ttcagagatgtagcaagcaccttagctaacgatacctgctctgatgagct
gtgacttaactctgtcctgctgggctcacaccatgccatcccatgccaat
cacaagtcatttgtttgttggtctattttggaattccagttgaattatat
ctttcctggatgggttaggtgatttagaatactcactggcacatttctca
ttcaaatcagctcaggagacatcaactaccttcaagaagtgcaatgcttt
cttcagatttcagcttctcccatggtttctatttctgcttaccatgttta
ttataaaacaactttcatcatgcaacttaagaataaccaggagggcctgg
aaacatggctcaggggttaggagcacttcttgcacttgtggaggactggg
ttcagttcccagcacctacacagcagcttactaccattcatatctccagt
tccaaggatctaatatgatcttctgacatttgttgggtcaagtaacacag
gtacacatctgtacatataggccaaaacactcacacaatataaataaatt
ttaaaaataccatgaaatatccaaacaataaataggtattatttaatatt
agcatattaggaaccggaacctttcgagacttgaaagatggctcagacaa
ttagagacactaggtaca
tgttccaggcagagaggaatggggatcccaggggagccctcttgtacctt
ccgcccaactctgggcgagaacgtggttgtggggctcgaagatggtgggt
gaacaggcagcaccctcctcctctccctctgtccacgtgtcagcagtgca
gctctgcctgggtctgtgtgcctccacgtgggtgttggggggcctatttc
tgtgtgcctgtgtgtcagctcctctgtctgtgtcactggtctgcctggag
atggcagtgtgggtgggtgaatccctttgtgtctctgagccctgagggtg
gagggctgagcagctgcaggttgcaactgggaaatccgagtcagagagag
ttggtgggtgtgtggttggaagggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134776111_134777269
seq2: B6Ng01-279D02.b_44_1211

seq1  GAATTCAAGCCTACCTCACTGCCACCCCACCCCACACACTTATGCTGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCTACCTCACTGCCACCCCACCCCACACACTTATGCTGCGG  50

seq1  TGCTGTAACTCAGAATGTTAGGAAAATGCTAATTAGCTACAGCCCTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAACTCAGAATGTTAGGAAAATGCTAATTAGCTACAGCCCTAGCC  100

seq1  CCTGACAGGCTGCCCCTAGCTTATGGAAATTGAAGTTCTACCCAGTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGGCTGCCCCTAGCTTATGGAAATTGAAGTTCTACCCAGTGTGG  150

seq1  TGGCACACACCTTTCATCTCACATTCTAGAGGCAGAGGCAGAGGCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACACCTTTCATCTCACATTCTAGAGGCAGAGGCAGAGGCAAAAG  200

seq1  GCAGGCTGAAATCTGCGAGCTGGAGACCAGCTTATCCCACTACACAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGAAATCTGCGAGCTGGAGACCAGCTTATCCCACTACACAGTGA  250

seq1  ATTCCAGGACAGCCAAGGCTACACAGAGAAACTCTTATCAAAACAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGACAGCCAAGGCTACACAGAGAAACTCTTATCAAAACAGAACA  300

seq1  AAACAAAACAGTCCCCAAACCTAGCCAGGCATGGTGGCACACAACCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAGTCCCCAAACCTAGCCAGGCATGGTGGCACACAACCATTA  350

seq1  ATCCCAGCACTCAGGAGGCAGAGGCTAAGGGATCTCTGCGAGTTCTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCAGGAGGCAGAGGCTAAGGGATCTCTGCGAGTTCTAGGC  400

seq1  TAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCAAGGGTTACATGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCAAGGGTTACATGGAGAG  450

seq1  ACCCTGTCTCAAACAAAACATCAAAACCAAAACAATACAAAGAATTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAACAAAACATCAAAACCAAAACAATACAAAGAATTGAAG  500

seq1  TTCAGAGATGTAGCAAGCACCTTAGCTAACGATACCTGCTCTGATGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATGTAGCAAGCACCTTAGCTAACGATACCTGCTCTGATGAGCT  550

seq1  GTGACTTAACTCTGTCCTGCTGGGCTCACACCATGCCATCCCATGCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTAACTCTGTCCTGCTGGGCTCACACCATGCCATCCCATGCCAAT  600

seq1  CACAAGTCATTTGTTTGTTGGTCTATTTTGGAATTCCAGTTGAATTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTCATTTGTTTGTTGGTCTATTTTGGAATTCCAGTTGAATTATAT  650

seq1  CTTTCCTGGATGGGTTAGGTGATTTAGAATACTCACTGGCACATTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGATGGGTTAGGTGATTTAGAATACTCACTGGCACATTTCTCA  700

seq1  TTCAAATCAGCTCAGGAGACATCAACTACCTTCAAGAAGTGCAATGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCAGCTCAGGAGACATCAACTACCTTCAAGAAGTGCAATGCTTT  750

seq1  CTTCAGATTTCAGCTTCTCCCATGGTTTCTATTTCTGCTTACCATGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATTTCAGCTTCTCCCATGGTTTCTATTTCTGCTTACCATGTTTA  800

seq1  TTATAAAACAACTTTCATCATGCAACTTAAGAATAACCAGGAGGGCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACAACTTTCATCATGCAACTTAAGAATAACCAGGAGGGCCTGG  850

seq1  AAACATGGCTCAGGGGTTAGGAGCACTTCTTGCACTTGTGGAGGACTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGCTCAGGGGTTAGGAGCACTTCTTGCACTTGTGGAGGACTGGG  900

seq1  TTCAGTTCCCAGCACCTACACAGCAGCTTACTACCATTCATATCTCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCCAGCACCTACACAGCAGCTTACTACCATTCATATCTCCAGT  950

seq1  TCCAAGGATCTAATATGATCTTCTGACATTTG-TGGGTCAAGT-ACACA-  997
      |||||||||||||||||||||||||||||||| |||||||||| ||||| 
seq2  TCCAAGGATCTAATATGATCTTCTGACATTTGTTGGGTCAAGTAACACAG  1000

seq1  GTACACATCTGTACATATAGG-CAAAACACTCACACAATAATAAATAAAT  1046
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GTACACATCTGTACATATAGGCCAAAACACTCACACAAT-ATAAATAAAT  1049

seq1  TTTAAAATAACCATGAAATATCCAAAC-ATAAATA-GTATTATT--ATAT  1092
      |||||||  |||||||||||||||||| ||||||| ||||||||  ||||
seq2  TTTAAAAATACCATGAAATATCCAAACAATAAATAGGTATTATTTAATAT  1099

seq1  TAGCATA-TAAGAACAGACACTTTCAGAGACTAGAGAGATGGCTCAG-CA  1140
      ||||||| || |||| |  || ||  |||||| || ||||||||||| ||
seq2  TAGCATATTAGGAACCGGAACCTTTCGAGACTTGAAAGATGGCTCAGACA  1149

seq1  ATTAAGAG-CACTAGGTACA  1159
      ||| |||| |||||||||||
seq2  ATT-AGAGACACTAGGTACA  1168

seq1: chr7_134959621_134960003
seq2: B6Ng01-279D02.g_67_449 (reverse)

seq1  AGTCCCTTCCAACCACACACCCACCAACTCTCTCTGACTCGGATTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTCCAACCACACACCCACCAACTCTCTCTGACTCGGATTTCCCA  50

seq1  GTTGCAACCTGCAGCTGCTCAGCCCTCCACCCTCAGGGCTCAGAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACCTGCAGCTGCTCAGCCCTCCACCCTCAGGGCTCAGAGACACA  100

seq1  AAGGGATTCACCCACCCACACTGCCATCTCCAGGCAGACCAGTGACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTCACCCACCCACACTGCCATCTCCAGGCAGACCAGTGACACAG  150

seq1  ACAGAGGAGCTGACACACAGGCACACAGAAATAGGCCCCCCAACACCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGCTGACACACAGGCACACAGAAATAGGCCCCCCAACACCCAC  200

seq1  GTGGAGGCACACAGACCCAGGCAGAGCTGCACTGCTGACACGTGGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCACACAGACCCAGGCAGAGCTGCACTGCTGACACGTGGACAGA  250

seq1  GGGAGAGGAGGAGGGTGCTGCCTGTTCACCCACCATCTTCGAGCCCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGAGGAGGGTGCTGCCTGTTCACCCACCATCTTCGAGCCCCACA  300

seq1  ACCACGTTCTCGCCCAGAGTTGGGCGGAAGGTACAAGAGGGCTCCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTTCTCGCCCAGAGTTGGGCGGAAGGTACAAGAGGGCTCCCCTGG  350

seq1  GATCCCCATTCCTCTCTGCCTGGAACAGAATTC  383
      |||||||||||||||||||||||||||||||||
seq2  GATCCCCATTCCTCTCTGCCTGGAACAGAATTC  383