BAC Information

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BAC

Clone NameB6Ng01-279F16
Chromosome7 (Build37)
Map Location 9,724,528 - 9,725,694
singlet/doubletsinglet
Overlap geneEG665582
Upstream geneLOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593
Downstream geneEG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279F16.bB6Ng01-279F16.g
ACCGA079356GA079357
length1,1951,148
definitionB6Ng01-279F16.b B6Ng01-279F16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaccacaggtaaacatgataaaatcaatctccagcaaaccagtagccaac
atcaaagtaaatagtgaaaagcaggaagcaatcccactaaaatcagggac
tagacatggctgcccactttctccctaactatttaacaatgtacttgatg
tcctagccagaggaattagacaacaaaaggagattaaggggatacaaatt
ggaaaggaagaagtcaaaatatcatgttagagatgatatgatactatata
taagtgacggtaaaaattccaccagagaactcctaatcctgataaacagg
tttaatgaattatctggatataaaattaactcaaacaagtcaatggactt
tttctacaaaaagtataaacaggctgagaaaaaaaattagggaaacaaca
cccttctcaatagtcacaaataatataaaataccttggtgtgatgctaac
taaggaagtgaaagatctgtatgataagaactccaagtctctgaagaaag
aaattaaaggagatgtcagaagatggatctcccatgttcatggattggca
ggatcaatatagtaaaaatggctatcttgccaaaagcaatctacagattc
aatgcaatcctcatcaaaattccaattcaattcttcaacgaattagaaag
agcaatctgcaaattcatctggaataacaaaaaaactctagtatagcaaa
aactcctctcaaggataaaagaacctttggtggaatcaccatgcctgacc
taaagctgtactagagagcaattgtgataaacctgaatggtactggtata
tcgatagattagtagaccaatggaatagaactgaagacccagaaaagaac
ccacacagctatggtcacttgatcattgacaagggaactaaaaccattca
gtggaaaaaagacagtattttcaacaaatggtgctggcacaactggcagt
tatcatgtagaagaattttgaattgatccattcctatctacttgtactag
agtaaaatcgaagtggattatgaactcacataaaaccagggacactgaaa
ctatagaggagaagtggggaaagcctcgaggtatgggcacagagaaaatc
ctgaatagacggcattgcctgtgctgtaagatcggaacatgacctccata
aattgccaagcctttctgcaaagtccaaaagacaacccgctcgct
gaattctgaaaaccaaggaagcccatcaacattctctgaaatgacttgta
aattaagtgcaattacaatcactgttcatgttgttaccatgttggggatt
acaaatttagaatggagtataattgcttaacacaaaccatctggtttacc
accctttccagaggattcccctgtgattttgctcattctgtttctcagca
ctgatttcatccttgattctcatacaaatggaggtgaggcaaggagtaaa
gtgctcagctttccatatgaagaaggaatcaaggtgaaggattttttagt
acaaagtatctacagagatatttttccttcagtgctaaaattagtgcaca
tcatgaacaataaccagaacttttgattaattattgccagatgaggaaac
atcttagggcttatttcattaatattttctactattcaaacataaacatt
atatttcctctaatattccaccttcttcctatgacttatgacaggaatca
cttaaatacaataatgcaatatctacattcatatgaactcacacatataa
gtatgtatatatacatacagcctacctgttcaattctgtgttgtttctgt
gtcaacaagtttgagctagtaaattctccagtacctattatacatgtttt
cccagtagaagtcagaggctcaatgtgtcatagggaatgaattcataaaa
aaatcagtcatctcagaaaacagtgagtatagggttttttatttataaaa
tatacccaaccacattgtggtttatgaatgtatcttctctgaattaaatg
atctacttaatgttagcatagaaaaaaatggcttaggaaaccttagcttt
ctgataacattaatttttattccctttttacctttcatattccattcccc
atccccccatacaccaactgaatactccacatcccacaccttctccccaa
cgcaacctgacttcatgttgaaccccatccccccacacaccttataggaa
ctaaaaggggactggaaaagaatggggagtgagaccatgtccgcagatca
cttatgccctgacagcagacatggaggcctgccagaccttccaatccgct
ctgggtgcatcaggtcctgaactactcaacaggaatgacaaggggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9724528_9725694
seq2: B6Ng01-279F16.g_66_1213

seq1  GAATTCTGAAAACCAAGGAAGCCCATCAACATTCTCTGAAATGACTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAACCAAGGAAGCCCATCAACATTCTCTGAAATGACTTGTA  50

seq1  AATTAAGTGCAATTACAATCACTGTTCATGTTGTTACCATGTTGGGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGCAATTACAATCACTGTTCATGTTGTTACCATGTTGGGGATT  100

seq1  ACAAATTTAGAATGGAGTATAATTGCTTAACACAAACCATCTGGTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAGAATGGAGTATAATTGCTTAACACAAACCATCTGGTTTACC  150

seq1  ACCCTTTCCAGAGGATTCCCCTGTGATTTTGCTCATTCTGTTTCTCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCAGAGGATTCCCCTGTGATTTTGCTCATTCTGTTTCTCAGCA  200

seq1  CTGATTTCATCCTTGATTCTCATACAAATGGAGGTGAGGCAAGGAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCATCCTTGATTCTCATACAAATGGAGGTGAGGCAAGGAGTAAA  250

seq1  GTGCTCAGCTTTCCATATGAAGAAGGAATCAAGGTGAAGGATTTTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGCTTTCCATATGAAGAAGGAATCAAGGTGAAGGATTTTTTAGT  300

seq1  ACAAAGTATCTACAGAGATATTTTTCCTTCAGTGCTAAAATTAGTGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTATCTACAGAGATATTTTTCCTTCAGTGCTAAAATTAGTGCACA  350

seq1  TCATGAACAATAACCAGAACTTTTGATTAATTATTGCCAGATGAGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACAATAACCAGAACTTTTGATTAATTATTGCCAGATGAGGAAAC  400

seq1  ATCTTAGGGCTTATTTCATTAATATTTTCTACTATTCAAACATAAACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGGCTTATTTCATTAATATTTTCTACTATTCAAACATAAACATT  450

seq1  ATATTTCCTCTAATATTCCACCTTCTTCCTATGACTTATGACAGGAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTCTAATATTCCACCTTCTTCCTATGACTTATGACAGGAATCA  500

seq1  CTTAAATACAATAATGCAATATCTACATTCATATGAACTCACACATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATACAATAATGCAATATCTACATTCATATGAACTCACACATATAA  550

seq1  GTATGTATATATACATACAGCCTACCTGTTCAATTCTGTGTTGTTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATATATACATACAGCCTACCTGTTCAATTCTGTGTTGTTTCTGT  600

seq1  GTCAACAAGTTTGAGCTAGTAAATTCTCCAGTACCTATTATACATGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAAGTTTGAGCTAGTAAATTCTCCAGTACCTATTATACATGTTTT  650

seq1  CCCAGTAGAAGTCAGAGGCTCAATGTGTCATAGGGAATGAATTCATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGAAGTCAGAGGCTCAATGTGTCATAGGGAATGAATTCATAAAA  700

seq1  AAATCAGTCATCTCAGAAAACAGTGAGTATAGGGTTTTTTATTTATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTCATCTCAGAAAACAGTGAGTATAGGGTTTTTTATTTATAAAA  750

seq1  TATACCCAACCACATTGTGGTTTATGAATGTATCTTCTCTGAATTAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCAACCACATTGTGGTTTATGAATGTATCTTCTCTGAATTAAATG  800

seq1  ATCTACTTAATGTTAGCATAGAAAAAAATGGCTTAGGAAACCTTAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTAATGTTAGCATAGAAAAAAATGGCTTAGGAAACCTTAGCTTT  850

seq1  CTGATAACATTAATTTTTATT-CCTTTTTACCTTTCATATTCCATTCCCC  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGATAACATTAATTTTTATTCCCTTTTTACCTTTCATATTCCATTCCCC  900

seq1  ATCCCCCCATACACCAACTGAATACTCCACATCCCACACCTTCTCCCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCCATACACCAACTGAATACTCCACATCCCACACCTTCTCCCCAA  950

seq1  CGCAACCTGACTTCATGTTGAACCCCATCCCCCACAC-CACCTTATAGGA  998
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  CGCAACCTGACTTCATGTTGAACCCCATCCCCC-CACACACCTTATAGGA  999

seq1  ACTAAAAGGGGGACTGGGAAAAGAATGGGGAGTGAGGACCCATGTCCCGC  1048
      ||||||| ||||||| ||||||||||||||||||||   |||||| ||||
seq2  ACTAAAA-GGGGACT-GGAAAAGAATGGGGAGTGAG--ACCATGT-CCGC  1044

seq1  GAGAATTCCACTTATGCCCTGGACAGGCAGACATGGGAGGGCTGCCAGAC  1098
       |||    |||||||||||| |||| |||||||| ||||| |||||||  
seq2  -AGA---TCACTTATGCCCT-GACA-GCAGACAT-GGAGGCCTGCCAG--  1085

seq1  ACTTTCCATTCCGCTCTGGGTGGGCATCCAAGTCTCTGACTCACTCAACA  1148
      || ||||| ||||||||||||  |||| || ||| ||||   ||||||||
seq2  ACCTTCCAATCCGCTCTGGGT--GCAT-CAGGTC-CTGAACTACTCAACA  1131

seq1  GGGGATGGACAAGGGGCAG  1167
        |||  ||||||||||||
seq2  --GGAATGACAAGGGGCAG  1148