BAC Information

Click to search

BAC

Clone NameB6Ng01-279G17
Chromosome7 (Build37)
Map Location 85,210,666 - 85,331,867
singlet/doubletdoublet
Overlap geneA330068G13Rik
Upstream genenone
Downstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279G17.bB6Ng01-279G17.g
ACCGA079406GA079407
length1,0731,159
definitionB6Ng01-279G17.b B6Ng01-279G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,210,666 - 85,211,651)(85,330,707 - 85,331,867)
sequence
gaattccattgtaggtgacctctatgttaatctgttgggtctatctctat
aaacattccattactggggtatggggcctagaaacttgctgaggaagtct
ggaaacttttgctgaggaagtagctgaggaagtctggaaactgctgctga
cccattgtccttgcctcaggccaggtggcagggcaactcctgaggcctgg
gctggcctggaatcgcccagttcttggaaacagatttagacctagtctcc
ttaactgccaatttgaagcctgtcctggaatcagcttagctttctcagtc
agtctgtgtaagaaggctgtagaaaatgtttctaatattggggcaggatg
ctgcagcaagatatttgaacttgccaatgacagtgaaagcagacagactg
aaatcaaagtccttttgtttttgtttttgtttttgttttttggatttttg
gcaacatggtctctctgtatagcagcccatatttagggtgagtcttctac
ttcacatatagtatcaatagcaatgcctcacaaagagtaaccagcagctt
gtattttgttttcttccagatgcagtcaaattagcaaccaagattagcaa
tcacaataccccaccagggggtctgacctcaggagataaagctaagcaca
cattgaagaacagagatgggtattccaggtatctagaagtagcatttgga
gaaaagccactgtgtttgaactcccctgggctttattttcactgcagagt
gaaaacattgcagtcagtcaaaacataaggaaactcagcacagctgacat
gaacactaccagccatcacggtagagctgttgtggacatttacatataga
ctacttttaagtattcttctgtcattggaccctgctaagtcatcataagc
catatttttttcaagcagagagagaggagattattacactcacttacact
tgtctattggtatgtatactaattttattgactactatcaacagtcatag
aaaactgtaagtgaatagataatagtacttgctctaagtcaatactggct
agagaaaactgatcattttgcca
gaattcatctccaaagtcataaaattcacattgcccttcctgtgggcagc
taggttccaactttaaaacaaggcctgatttgatatttgccctaagaatg
atgtcttaaaccagtaaaatcagtaatcagttttctttttcttttttttt
tttaaggtaaaagactaaattctattaactttgtcccctatccatccagg
aatatattggagcatcaaggtctaagctcagagctctcaagagatttata
gtccataaagtagatgtttctaatagaaggtggattgagctaatacagaa
gacaagggtcctgctgagctcttcctcctgaggagcttgcaggcatttag
gcattgctttcatttagtatctctgagatgattcagtctcttctcattta
aggctgtcaggaatttcgacttcttgtcggcagggatgaaggtagcctga
gagcccagctacgctcactctgtgtagtctagcatcctttggatgcagca
cttctcaaaggactgtaaaaatcacatgctcaactccaagtctggtattt
atgatttcatttaagaagcattcatgggagtgatactttaaaaagaaagt
ttatattctgtgaagtagcatggcctactcagttcctcccagtggggatt
agtccctcatccgtgtctgtttcagagttgcctgacacctgcctgctgcc
cttgaatctattcctggagaggaagagtcagcctggtccaaatagcatga
cttctgctgcccgaaggagaggagtatatttcagaaagattttcttctct
gtgatttttcactttcccctttcccttggttcacattctatgacttccat
gggacagaagagctggctttcttaaagtctgtggaagtcttaatacaagg
tgaatcccaggaccacaaacagtttggacttcaaacagtgaagaaaattg
gcactgaatgattcggcacacaaagcagaaaaactttcatttctgcaggc
aggagaattgactgtaatataagacttctaaaggatccctgccttgagta
tttcagtgctgtcagacatgtgacatctagaataaacttcttgtgcacta
aattgactgcacagcctcatggaatgcaatgtggcgtgttcctgtgaatt
cccatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_85210666_85211651
seq2: B6Ng01-279G17.b_154_1119

seq1  TTTGCTGAGGAAGTAGCTGAGGAAGTCTGGAAACTGCTGCTGACCCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAGGAAGTAGCTGAGGAAGTCTGGAAACTGCTGCTGACCCATTG  50

seq1  TCCTTGCCTCAGGCCAGGTGGCAGGGCAACTCCTGAGGCCTGGGCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCTCAGGCCAGGTGGCAGGGCAACTCCTGAGGCCTGGGCTGGCC  100

seq1  TGGAATCGCCCAGTTCTTGGAAACAGATTTAGACCTAGTCTCCTTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCGCCCAGTTCTTGGAAACAGATTTAGACCTAGTCTCCTTAACTG  150

seq1  CCAATTTGAAGCCTGTCCTGGAATCAGCTTAGCTTTCTCAGTCAGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGAAGCCTGTCCTGGAATCAGCTTAGCTTTCTCAGTCAGTCTGT  200

seq1  GTAAGAAGGCTGTAGAAAATGTTTCTAATATTGGGGCAGGATGCTGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGCTGTAGAAAATGTTTCTAATATTGGGGCAGGATGCTGCAGC  250

seq1  AAGATATTTGAACTTGCCAATGACAGTGAAAGCAGACAGACTGAAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTGAACTTGCCAATGACAGTGAAAGCAGACAGACTGAAATCAA  300

seq1  AGTCCTTTTGTTTTTGTTTTTGTTTTTGTTTTTTGGATTTTTGGCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTTGTTTTTGTTTTTGTTTTTGTTTTTTGGATTTTTGGCAACAT  350

seq1  GGTCTCTCTGTATAGCAGCCCATATTTAGGGTGAGTCTTCTACTTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTGTATAGCAGCCCATATTTAGGGTGAGTCTTCTACTTCACAT  400

seq1  ATAGTATCAATAGCAATGCCTCACAAAGAGTAACCAGCAGCTTGTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATCAATAGCAATGCCTCACAAAGAGTAACCAGCAGCTTGTATTTT  450

seq1  GTTTTCTTCCAGATGCAGTCAAATTAGCAACCAAGATTAGCAATCACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCCAGATGCAGTCAAATTAGCAACCAAGATTAGCAATCACAAT  500

seq1  ACCCCACCAGGGGGTCTGACCTCAGGAGATAAAGCTAAGCACACATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCAGGGGGTCTGACCTCAGGAGATAAAGCTAAGCACACATTGAA  550

seq1  GAACAGAGATGGGTATTCCAGGTATCTAGAAGTAGCATTTGGAGAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGATGGGTATTCCAGGTATCTAGAAGTAGCATTTGGAGAAAAGC  600

seq1  CACTGTGTTTGAACTCCCCTGGGCTTTATTTTCACTGCAGAGTGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTTTGAACTCCCCTGGGCTTTATTTTCACTGCAGAGTGAAAACA  650

seq1  TTGCAGTCAGTCAAAACATAAGGAAACTCAGCACAGCTGACATGAACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTCAGTCAAAACATAAGGAAACTCAGCACAGCTGACATGAACACT  700

seq1  ACCAGCCATCACGGTAGAGCTGTTGTGGACATTTACATATAGACTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCATCACGGTAGAGCTGTTGTGGACATTTACATATAGACTACTTT  750

seq1  TAAGTATTCTTCTGTCATTGGACCCTGCTAAGTCATCATAAGCCATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTCTTCTGTCATTGGACCCTGCTAAGTCATCATAAGCCATATTT  800

seq1  TTTTCAAGCAGAGAAGAGAAGGAAGATTATTAACACTCACTTAACACCTT  850
      ||||||||||||| |||||  | |||||||| |||||||||| ||| |||
seq2  TTTTCAAGCAGAG-AGAGA--GGAGATTATT-ACACTCACTT-ACA-CTT  844

seq1  GTCTATTGGGTATTGTTATACTAATTTTATTGACTTAACCTATTCCACAG  900
      ||||||| |||||   |||||||||||||||||||    ||| || ||||
seq2  GTCTATT-GGTAT--GTATACTAATTTTATTGACT---ACTA-TCAACAG  887

seq1  TCATAGAAAACTGTAAGTGAATAGATAATAGTAACTTGCCTTCTAAGTCA  950
      |||||||||||||||||||||||||||||||| ||||||  |||||||| 
seq2  TCATAGAAAACTGTAAGTGAATAGATAATAGT-ACTTGC--TCTAAGTC-  933

seq1  AATACTTGCTAGAGAAAACTGGAATCATTTTTGCCA  986
      |||||| ||||||||||||||  |||| ||||||||
seq2  AATACTGGCTAGAGAAAACTG--ATCA-TTTTGCCA  966

seq1: chr7_85330707_85331867
seq2: B6Ng01-279G17.g_68_1226 (reverse)

seq1  TCAGATGGG-ATTTACAGGGACACGCCACA-TGCATCTCAATGA-GCTGT  47
      ||||||||| ||| ||||| |||||||||| ||||| || |||| |||||
seq2  TCAGATGGGAATTCACAGGAACACGCCACATTGCAT-TCCATGAGGCTGT  49

seq1  GCAGTCAAATTTAGTGCACA--GAGGTTAATCTAGATGTCAACATTGTCT  95
      |||||| |||||||||||||   || ||| |||||||||| ||| |||||
seq2  GCAGTC-AATTTAGTGCACAAGAAGTTTATTCTAGATGTC-ACA-TGTCT  96

seq1  GACAGCACTGAAATTACTCCAGGGCAGGGATCCTTTAGAAGTCTTAATAT  145
      ||||||||||||| |||| || ||||||||||||||||||||||| ||||
seq2  GACAGCACTGAAA-TACT-CAAGGCAGGGATCCTTTAGAAGTCTT-ATAT  143

seq1  AACAGTCAATTCCTCCTGCCTGCAGGAAATGAAAG-TTTTCTGCTTTGTG  194
       |||||||||| |||||||||||| |||||||||| ||||||||||||||
seq2  TACAGTCAATT-CTCCTGCCTGCA-GAAATGAAAGTTTTTCTGCTTTGTG  191

seq1  TGCCGAATCATTCAGTGCCAATTTTC-TCACTGTTTGAAGTCCAAACTGT  243
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCGAATCATTCAGTGCCAATTTTCTTCACTGTTTGAAGTCCAAACTGT  241

seq1  TTGTGGTCCTGGGATTCACCTTGTATTAAGACTTCCACAGACTTTAAG-A  292
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGTGGTCCTGGGATTCACCTTGTATTAAGACTTCCACAGACTTTAAGAA  291

seq1  AGCCAGCTCTTCTGTCCCATGGAAGTCATAGAATGTGAACCAAGGGAAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTCTTCTGTCCCATGGAAGTCATAGAATGTGAACCAAGGGAAAG  341

seq1  GGGAAAGTGAAAAATCACAGAGAAGAAAATCTTTCCTGAAATATACTCCT  392
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGAAAGTGAAAAATCACAGAGAAGAAAATCTTT-CTGAAATATACTCCT  390

seq1  CTCCTTCGGGCAGCAGAAGTCATGCTATTTGGACCAGGCTGACTCTTCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCGGGCAGCAGAAGTCATGCTATTTGGACCAGGCTGACTCTTCCT  440

seq1  CTCCAGGAATAGATTCAAGGGCAGCAGGCAGGTGTCAGGCAACTCTGAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAATAGATTCAAGGGCAGCAGGCAGGTGTCAGGCAACTCTGAAA  490

seq1  CAGACACGGATGAGGGACTAATCCCCACTGGGAGGAACTGAGTAGGCCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGGATGAGGGACTAATCCCCACTGGGAGGAACTGAGTAGGCCAT  540

seq1  GCTACTTCACAGAATATAAACTTTCTTTTTAAAGTATCACTCCCATGAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCACAGAATATAAACTTTCTTTTTAAAGTATCACTCCCATGAAT  590

seq1  GCTTCTTAAATGAAATCATAAATACCAGACTTGGAGTTGAGCATGTGATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAAATGAAATCATAAATACCAGACTTGGAGTTGAGCATGTGATT  640

seq1  TTTACAGTCCTTTGAGAAGTGCTGCATCCAAAGGATGCTAGACTACACAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTCCTTTGAGAAGTGCTGCATCCAAAGGATGCTAGACTACACAG  690

seq1  AGTGAGCGTAGCTGGGCTCTCAGGCTACCTTCATCCCTGCCGACAAGAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCGTAGCTGGGCTCTCAGGCTACCTTCATCCCTGCCGACAAGAAG  740

seq1  TCGAAATTCCTGACAGCCTTAAATGAGAAGAGACTGAATCATCTCAGAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAATTCCTGACAGCCTTAAATGAGAAGAGACTGAATCATCTCAGAGA  790

seq1  TACTAAATGAAAGCAATGCCTAAATGCCTGCAAGCTCCTCAGGAGGAAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGAAAGCAATGCCTAAATGCCTGCAAGCTCCTCAGGAGGAAGA  840

seq1  GCTCAGCAGGACCCTTGTCTTCTGTATTAGCTCAATCCACCTTCTATTAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGACCCTTGTCTTCTGTATTAGCTCAATCCACCTTCTATTAG  890

seq1  AAACATCTACTTTATGGACTATAAATCTCTTGAGAGCTCTGAGCTTAGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTACTTTATGGACTATAAATCTCTTGAGAGCTCTGAGCTTAGAC  940

seq1  CTTGATGCTCCAATATATTCCTGGATGGATAGGGGACAAAGTTAATAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCTCCAATATATTCCTGGATGGATAGGGGACAAAGTTAATAGAA  990

seq1  TTTAGTCTTTTACCTTAAAAAAAAAAAAGAAAAAGAAAACTGATTACTGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTTTTACCTTAAAAAAAAAAAAGAAAAAGAAAACTGATTACTGA  1040

seq1  TTTTACTGGTTTAAGACATCATTCTTAGGGCAAATATCAAATCAGGCCTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGGTTTAAGACATCATTCTTAGGGCAAATATCAAATCAGGCCTT  1090

seq1  GTTTTAAAGTTGGAACCTAGCTGCCCACAGGAAGGGCAATGTGAATTTTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGTTGGAACCTAGCTGCCCACAGGAAGGGCAATGTGAATTTTA  1140

seq1  TGACTTTGGAGATGAATTC  1161
      |||||||||||||||||||
seq2  TGACTTTGGAGATGAATTC  1159