BAC Information

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BAC

Clone NameB6Ng01-279J09
Chromosome7 (Build37)2 (Build37)
Map Location 103,217,238 - 103,218,05156,556,777 - 56,557,824
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666823, Frda-ps
Downstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279J09.bB6Ng01-279J09.g
ACCGA079529GA079530
length1,0081,051
definitionB6Ng01-279J09.b B6Ng01-279J09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,217,238 - 103,218,051)(56,556,777 - 56,557,824)
sequence
gaattcagggatcaaaaagcgtggaaaaatttgaatgtcatgtcgagctg
gtatcggcttctggaataccgaaaggatctctcatctcggctccatcgtt
tgtgcttgtgggatcatccaccacatccacaggggcaactggatcaggag
cctcattcttgtagcgtctcaccaatctctccggcacccaaagaggttct
gtctggtcctgtggaaacacacagaccctctcgcccatgtcaacacccga
tcctgtcgatccccagggggatggacacaatacctcgtggtgatgagacc
ataacctcaatcaccttgtacctgcttcctggcaacgttatattcgcctc
tattttatccgaggtccttcccaaactcctgggttactttgtgcctactt
cctggcaactttatgctcacctctattttatccgaggtccttcccaaact
cctggggtcacaagtttcactcaccatgaacttaccctgccggcaaccac
tgactgctaaaagttctgaactcggtgggggagtcggttccccgtacggg
ccaccaattgtcgcgcccgctctcgaccagcaagaacgacgtgaccacca
gtccttctaacagcagttcattcagtcttcatctctcttctttctcttca
tcagtaccgttccccagctgaagagttctgaatccacgcccgatccttct
caacagtctgttttacgggaacttttattaaccactccttccccgtgatg
cagttctgaatcctccctgtagcagggggtcttcgctcttgcctgaagat
gtttcttttcccgggtttcggcaccaactgttgcgcgtgctcaactggcc
aggaagaacgacgctgcaacaggatccttctgcacacgtttattcagtcc
tgtttcttctttctccatatatctcccttgtttatatctcccctgttata
tctcccctgtttatatctcccttgttttaatatctcccttgttttatatc
tccctgtt
gaattcttcagccaatagcatatggcagagcaatttaagaaggcttccaa
gtctgcattataaaggacaacccatcttcatcagataacccatatttgaa
accatgttttgctatgtgaggagcccacatattctaatatcattctggag
ctaaagaagctaaagtatatagacagatatcagtaggtgttcctatcacc
agcctagtcctttagacatcccgtttcagtgctaaatgtgtgactaagtc
acttttgtgtgagttgtagttcactttgtattaatacaaagagaatgcag
atgcagtgacaggagcacctactgatatctgtctatgtactttagcttgt
acagactgtatctcattacctttaattgcatgaaaataagtacgttttag
tctctgtagttaaaagattatattcactgacagttcatttggtgaaagag
taattttatgataaatgaaatacataatagaaataaggccgtctgacaaa
gaaattcaactttcagaaataacaatgcaaacaatagccaatagatgtac
caaaaacatacacttttattcatttagtcaaataaatgaaaattaatatt
aaaatatcagaattttccatactggaaaaggattgaatatgttttagttg
accaatgaatgatatacataggtatatttgtaagactagatgaacatatc
ataccaaaggccaaactgctactacccataacattgaaaaatgagcacac
acttaggatgaaaaccaacaatctttcatttattctcagatatctccttc
aagttactagtgaaagatgtttactatagcattatttaaagtgaaaaaaa
gagagaacatgaatgtgcaataaagagaaatggctatatacattgggatt
taagcactctgaagaatatgacaacttaatatgggaaatatttaagtaaa
gttaatagaggaaggaagtttattatataatattaacttgaagttgtaaa
aatttgcatggtagtctaccttgacataagttttaaaaatacattactta
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_103217238_103218051
seq2: B6Ng01-279J09.b_46_409

seq1  GAATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTG  50

seq1  GTATCGGCTTCTGGAACACCGAAAGGATCTCTCATCTCGGCTCCATCCTT  100
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GTATCGGCTTCTGGAATACCGAAAGGATCTCTCATCTCGGCTCCATCGTT  100

seq1  TGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGAG  150

seq1  CCTCATTCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTCC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  CCTCATTCTTGTAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTCT  200

seq1  GTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACATCAACAC  250
      ||||||||||||||||||||    |||||||||||||||||  |||||||
seq2  GTCTGGTCCTGTGGAAACAC----ACAGACCCTCTCGCCCATGTCAACAC  246

seq1  CTGATCTACTCGATCCCCAGGGGGGATGGACACAATACCTCGTGGTGATG  300
      | ||||   |||||||||| ||||||||||||||||||||||||||||||
seq2  CCGATCCTGTCGATCCCCA-GGGGGATGGACACAATACCTCGTGGTGATG  295

seq1  AGACCATAACCTCAATCACC-TGTGTGTCCAT-CTGGGGAGTCAATATGA  348
      |||||||||||||||||||| |||   | | | ||||  |    ||||  
seq2  AGACCATAACCTCAATCACCTTGTACCTGCTTCCTGGCAACGTTATATTC  345

seq1  GAGTCAAGTTTTCACTGCTGAGGAGGCATAGGGAGGAGGCACAGAAGCTA  398
      |  || | |||      | ||||                           
seq2  GCCTCTATTTT----ATCCGAGG---------------------------  364

seq1  ATTCGCCTTCCTCCTCCACCTCGGCTCTTTTATTTTGTCCTTTCTGTCCA  448
                                                        
seq2  --------------------------------------------------  364

seq1  CCTGATAACACTGTGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTT  498
                                                        
seq2  --------------------------------------------------  364

seq1  CTCCTTTTCCGACATACTTTCTTGTTGCTCTGTAAGGATTTTCTGACCTG  548
                                                        
seq2  --------------------------------------------------  364

seq1  TCTTGACTGCCTCTACACACAAACAGTAACAGAGTCCATATATCAGAACA  598
                                                        
seq2  --------------------------------------------------  364

seq1  AACAAGACCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGAAAA  648
                                                        
seq2  --------------------------------------------------  364

seq1  AAGCATAACTACACAGCGAGGATCTATTGATCACTACACTGAGGTTATCA  698
                                                        
seq2  --------------------------------------------------  364

seq1  TAGTTCCTTAATCTATCCTGAAACTGTGAACCTTAACTTGTCCCAAAGCC  748
                                                        
seq2  --------------------------------------------------  364

seq1  ATGAACCTTTAGTTACCTTGTACCTGCTTCCTGGCAACGTTATATTCGCC  798
                                                        
seq2  --------------------------------------------------  364

seq1  TCTATTTTATCCGAGG  814
                      
seq2  ----------------  364

seq1: chr2_56556777_56557824
seq2: B6Ng01-279J09.g_68_1118

seq1  GAATTCTTCAGCCAATAGCATATGGCAGAGCAATTTAAGAAGGCTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCCAATAGCATATGGCAGAGCAATTTAAGAAGGCTTCCAA  50

seq1  GTCTGCATTATAAAGGACAACCCATCTTCATCAGATAACCCATATTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTATAAAGGACAACCCATCTTCATCAGATAACCCATATTTGAA  100

seq1  ACCATGTTTTGCTATGTGAGGAGCCCACATATTCTAATATCATTCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTTTGCTATGTGAGGAGCCCACATATTCTAATATCATTCTGGAG  150

seq1  CTAAAGAAGCTAAAGTATATAGACAGATATCAGTAGGTGTTCCTATCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAGCTAAAGTATATAGACAGATATCAGTAGGTGTTCCTATCACC  200

seq1  AGCCTAGTCCTTTAGACATCCCGTTTCAGTGCTAAATGTGTGACTAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGTCCTTTAGACATCCCGTTTCAGTGCTAAATGTGTGACTAAGTC  250

seq1  ACTTTTGTGTGAGTTGTAGTTCACTTTGTATTAATACAAAGAGAATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTGAGTTGTAGTTCACTTTGTATTAATACAAAGAGAATGCAG  300

seq1  ATGCAGTGACAGGAGCACCTACTGATATCTGTCTATGTACTTTAGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGACAGGAGCACCTACTGATATCTGTCTATGTACTTTAGCTTGT  350

seq1  ACAGACTGTATCTCATTACCTTTAATTGCATGAAAATAAGTACGTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTATCTCATTACCTTTAATTGCATGAAAATAAGTACGTTTTAG  400

seq1  TCTCTGTAGTTAAAAGATTATATTCACTGACAGTTCATTTGGTGAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAGTTAAAAGATTATATTCACTGACAGTTCATTTGGTGAAAGAG  450

seq1  TAATTTTATGATAAATGAAATACATAATAGAAATAAGGCCGTCTGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATGATAAATGAAATACATAATAGAAATAAGGCCGTCTGACAAA  500

seq1  GAAATTCAACTTTCAGAAATAACAATGCAAACAATAGCCAATAGATGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAACTTTCAGAAATAACAATGCAAACAATAGCCAATAGATGTAC  550

seq1  CAAAAACATACACTTTTATTCATTTAGTCAAATAAATGAAAATTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATACACTTTTATTCATTTAGTCAAATAAATGAAAATTAATATT  600

seq1  AAAATATCAGAATTTTCCATACTGGAAAAGGATTGAATATGTTTTAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCAGAATTTTCCATACTGGAAAAGGATTGAATATGTTTTAGTTG  650

seq1  ACCAATGAATGATATACATAGGTATATTTGTAAGACTAGATGAACATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAATGATATACATAGGTATATTTGTAAGACTAGATGAACATATC  700

seq1  ATACCAAAGGCCAAACTGCTACTACCCATAACATTGAAAAATGAGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAGGCCAAACTGCTACTACCCATAACATTGAAAAATGAGCACAC  750

seq1  ACTTAGGATGAAAACCAACAATCTTTCATTTATTCTCAGATATCTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGATGAAAACCAACAATCTTTCATTTATTCTCAGATATCTCCTTC  800

seq1  AGGTTACTAGTGAAAGATGTTTACTATAGCATTATTTAAAGTGAAAAAAA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTAGTGAAAGATGTTTACTATAGCATTATTTAAAGTGAAAAAAA  850

seq1  GAGAGAACATGAATGTGCAATAAAGAGAAATGGCTATATACATTGGGA-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGAGAACATGAATGTGCAATAAAGAGAAATGGCTATATACATTGGGATT  900

seq1  TAAGCACTCTGAAGAATATGACAACCTAATAT-GGAAATATTTAAGTAAA  948
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TAAGCACTCTGAAGAATATGACAACTTAATATGGGAAATATTTAAGTAAA  950

seq1  GTTTAATAGA-GAAGGAAGTTTATTATATAATATTAACTTGAAGTTGT-A  996
      | |||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  G-TTAATAGAGGAAGGAAGTTTATTATATAATATTAACTTGAAGTTGTAA  999

seq1  AAATTTGCATGGTAGTCCTACTTGACATAAGTTTTTAAAATACATAACTT  1046
      |||||||||||||||||   ||||||||||||||| ||||||||| ||||
seq2  AAATTTGCATGGTAGTCTACCTTGACATAAGTTTTAAAAATACATTACTT  1049

seq1  AT  1048
      ||
seq2  AT  1051