BAC Information

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BAC

Clone NameB6Ng01-279L03
Chromosome7 (Build37)
Map Location 127,972,144 - 127,973,293
singlet/doubletsinglet
Overlap geneEG436008
Upstream gene2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik
Downstream geneLOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279L03.bB6Ng01-279L03.g
ACCGA079613GA079614
length1,1781,136
definitionB6Ng01-279L03.b B6Ng01-279L03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccagcctgggacagagtaagttccaactagagaaaagctt
aggtccaggtgtagtggtatacacctttaatctaggccataccttctgca
ggaggctgagatacgggcaatagaaaaaggaggaagggtttgttcttttt
gcctgttacagttccctgccagttcatctgttggaacctactccttcagg
attccgtcttataagaagaccagctgaaacaacccagcctatgagtctga
gcaactcctagactcttagacttcccattcacagttgcccactgttgggt
tagttggactgcagactgtaagtcattccaataaattcccttaatatata
cagacagtccataagttctgtgactctagagaatcctgcctaacacatac
actgtaatgcagaacagtatattcttggagcagggattagatggaggaaa
aggacttggactctaagtgtggcaacttagtggaggacaagtagataaaa
actagtaaagcttttgggttggattcctctggtgctgactcctggcccag
aagagtctgaaattgtgctcagtggttagctttcattctgcctgacagat
agggagggataaacatggagggcacacagctttcctgcatctgtttctta
accgtccttaagccaaaaacaacacatagtctgaagccacatatcctggt
tgtatatatagtaatctttatagcctcatgaggtcctgatgaggaaatca
tagaaaaattcgcaatgtcaaagggccttcaagcctgtcctgtgagctgg
cgtaccacttcctccatatagctctggtcttgacctcactaaaagactcc
attcgtaaactgacttttcatatgttccctgtgggacagatccgtcccat
gtagaggatgtaggaatagtctctttgtaaataatttgtacctgtttata
cgtttgccttttttagttattgtgcatcaaccaaagatacttagacctga
tataaattataaactgtctaaaaatgtttatagtatatatgcatttaatt
tgagtggatgtgtgtctgtgtgtgtgatatgcaatgtggaacagcaagtc
gtgaagtcaaaggaacgttaacggaactaggcctcccttccgggttggac
ctcttgaattaaaatctggttctactac
gaattcactgtgtagagctggcctcggactcacagagatccacctgcctc
ttcctcctgagcgctgggataaaatgtgtgcaccactgcaccagctgatg
tctgagtagttttatatttgcttagcacgaaccatccaaaaagaggacat
tttggtgctggagagaggactcatcagtttagagccctcactgctcttca
gacgacccagtttgattcccagcatccacatggtggctcacaaccatcca
ttgctccagtccaagggatctgacgccctcttctggcatgcacctggtgc
gcatacatgcattccggcagggcatataaaataaataaatctaagagctt
cttttggttgtttgtacaaagaaggtctcttaagtagacactaagagtaa
gacagcagatgtaatttagggcctctctcatttgattctccttagtgtta
aattaggaagggcaaaagattatgctcttcagcttatgatgaaaaaccgg
aagcttgtctaagatcacgccacatggggattggcttcaggatgctaagt
tcagggccccttacgctgaaaggaagagagggcatggagaatatttccgg
gaagccactgcctacatcttccccagactgatggaggctagtgacagtcc
tttggtgtcatgtgatagtcactaccactggaaactattaccctgtgctt
gttcagaggaggaaatcagagacaccgtgaagctacctacacaagatcac
tcacttacagggcactggtggaatttgaacccagacctaaagcctcacca
ctgtcttataaaacaccagaaaccaacaaggtaaacagctgtcacgagtg
ctgaggaactgtagtcaggcattgacttggctaatgcctgacttcctctt
gtctaaagtgtgggtttgcgggttaactcgttgggttctaagggcaaagg
atctggggcagttgggggcgacaggtcagttgccgtctgctggcagtctg
tgagacaccatcagctctttagcattaaaaactttcatctagcacctact
atgtgcagcacttcactgagcactagaaggtgagaaggacctgtgcctta
ccccaggaagtccaatcaagaagaaatgttctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_127972144_127973293
seq2: B6Ng01-279L03.g_69_1204

seq1  GAATTCACTGTGTAGAGCTGGCCTCGGACTCACAGAGATCCACCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGAGCTGGCCTCGGACTCACAGAGATCCACCTGCCTC  50

seq1  TTCCTCCTGAGCGCTGGGATAAAATGTGTGCACCACTGCACCAGCTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGAGCGCTGGGATAAAATGTGTGCACCACTGCACCAGCTGATG  100

seq1  TCTGAGTAGTTTTATATTTGCTTAGCACGAACCATCCAAAAAGAGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTAGTTTTATATTTGCTTAGCACGAACCATCCAAAAAGAGGACAT  150

seq1  TTTGGTGCTGGAGAGAGGACTCATCAGTTTAGAGCCCTCACTGCTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCTGGAGAGAGGACTCATCAGTTTAGAGCCCTCACTGCTCTTCA  200

seq1  GACGACCCAGTTTGATTCCCAGCATCCACATGGTGGCTCACAACCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACCCAGTTTGATTCCCAGCATCCACATGGTGGCTCACAACCATCCA  250

seq1  TTGCTCCAGTCCAAGGGATCTGACGCCCTCTTCTGGCATGCACCTGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAGTCCAAGGGATCTGACGCCCTCTTCTGGCATGCACCTGGTGC  300

seq1  GCATACATGCATTCCGGCAGGGCATATAAAATAAATAAATCTAAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATGCATTCCGGCAGGGCATATAAAATAAATAAATCTAAGAGCTT  350

seq1  CTTTTGGTTGTTTGTACAAAGAAGGTCTCTTAAGTAGACACTAAGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTTGTTTGTACAAAGAAGGTCTCTTAAGTAGACACTAAGAGTAA  400

seq1  GACAGCAGATGTAATTTAGGGCCTCTCTCATTTGATTCTCCTTAGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGATGTAATTTAGGGCCTCTCTCATTTGATTCTCCTTAGTGTTA  450

seq1  AATTAGGAAGGGCAAAAGATTATGCTCTTCAGCTTATGATGAAAAACCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAGGGCAAAAGATTATGCTCTTCAGCTTATGATGAAAAACCGG  500

seq1  AAGCTTGTCTAAGATCACGCCACATGGGGATTGGCTTCAGGATGCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTCTAAGATCACGCCACATGGGGATTGGCTTCAGGATGCTAAGT  550

seq1  TCAGGGCCCCTTACGCTGAAAGGAAGAGAGGGCATGGAGAATATTTCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCCCTTACGCTGAAAGGAAGAGAGGGCATGGAGAATATTTCCGG  600

seq1  GAAGCCACTGCCTACATCTTCCCCAGACTGATGGAGGCTAGTGACAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACTGCCTACATCTTCCCCAGACTGATGGAGGCTAGTGACAGTCC  650

seq1  TTTGGTGTCATGTGATAGTCACTACCACTGGAAACTATTACCCTGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCATGTGATAGTCACTACCACTGGAAACTATTACCCTGTGCTT  700

seq1  GTTCAGAGGAGGAAATCAGAGACACCGTGAAGCTACCTACACAAGATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGGAGGAAATCAGAGACACCGTGAAGCTACCTACACAAGATCAC  750

seq1  TCACTTACAGGGCACTGGTGGAATTTGAACCCAGACCTAAAGCCTCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACAGGGCACTGGTGGAATTTGAACCCAGACCTAAAGCCTCACCA  800

seq1  CTGTCTTATAAAACACCAGAAACCAACAAGGTAAACAGCTGTCAGGAGTG  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGTCTTATAAAACACCAGAAACCAACAAGGTAAACAGCTGTCACGAGTG  850

seq1  CTGAGGAACTGTAGTCAGGCATTGACTTGGCTAATGCCTGACTTCCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAACTGTAGTCAGGCATTGACTTGGCTAATGCCTGACTTCCTCTT  900

seq1  GTCTAAAGTGTGGGTTTGCGGGTTAACTCGTT-GGTTCT-AGGGCAAAGG  948
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  GTCTAAAGTGTGGGTTTGCGGGTTAACTCGTTGGGTTCTAAGGGCAAAGG  950

seq1  ATCTGGGGCAGTTTGGGGGCGACAGGTCAGTTGCCGTCTGCTGGCCAGTC  998
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  ATCTGGGGCAG-TTGGGGGCGACAGGTCAGTTGCCGTCTGCTGG-CAGTC  998

seq1  TGTGAGACACCAATCAGCTCTTTAGCATTTAAAAACCTTTCATTCCTTAA  1048
      ||||||||||| |||||||||||||||||  |||| |||||||  ||  |
seq2  TGTGAGACACC-ATCAGCTCTTTAGCATT--AAAAACTTTCAT--CT--A  1041

seq1  GCACCTACTATGTGCCAGGCACTTCACTGAGCACTAG-AGGTGAGAAAGA  1097
      |||||||||||||||   ||||||||||||||||||| ||||||||| ||
seq2  GCACCTACTATGTGC--AGCACTTCACTGAGCACTAGAAGGTGAGAAGGA  1089

seq1  CTTGGTGCTTACCCCAGGAAGTCCACAATCCAAAGAGGAAAATGTTCTAG  1147
      | ||   ||||||||||||||||  |||||  |||| | ||||||||| |
seq2  CCTGTGCCTTACCCCAGGAAGTC--CAATC--AAGAAG-AAATGTTCT-G  1133

seq1  AAA  1150
      |||
seq2  AAA  1136