BAC Information

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BAC

Clone NameB6Ng01-279N11
Chromosome7 (Build37)7 (Build37)
Map Location 8,665,066 - 8,665,7227,629,731 - 7,630,015
singlet/doubletsingletsinglet
Overlap geneLOC100041983
Upstream geneLOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977
Downstream geneLOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N11.bB6Ng01-279N11.g
ACCGA079717GA079718
length1,170246
definitionB6Ng01-279N11.b B6Ng01-279N11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,665,066 - 8,665,722)(7,629,731 - 7,630,015)
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaattgatcttttttcttt
tcttttttctttgccttccttctaatctctccccaggtattcttacctga
cctaaaattttccttgggttcaagacccttggaaaggcctgtatacttag
tttgtgtaccatattttctctttgcccctactctctctccccgctttact
tctgatagattgtcctgaatttcatccagaattttcagccctatcttaat
cacttgataacatgtgaaaaagaacaaaagggctcctaacactagaaaaa
gttcaaggccaaacataccttgtaaagctattttccactttacttctgat
agactgtcttgactttccttagaaagttcaagaccagacttaccttgtaa
agctgtactcactggtactcctgttccccagctgaagagttctgaattca
tgcagttgaatccttctcaacagtctgttttacgggaacctttattaccg
tgacccgcagttctggttccggaatgagggatcttccttgcgcaggtgat
ggttaactcccgtcccgagttttcttgtattttctcgtcccggattttct
cgtcccgggtttcagcaccaactcttaaacgcgttctcacgaccggccag
gaagaacacaacaaaccagaatcttctgcggcaaaactttattgcttaca
tcttcaggagcaggagcgcaagcccccagccccaaaaacgaaagcccccc
aaaacgaaagcgaaaccctgtccctatttaggagagttatccttcgccta
ggacgcatcactccctgattggctgcagcccatgggccgagttgacgtca
cgggaaaggcagagtacatgtagtgggaaaattactcttggcacatgcgc
agattatttgtttaccacttagaacacaggatggcagcgcatctgtgacg
gcgaatggtggggggcgctcccacacacgagctgatttatttttttaaga
catctaagtgctgcagagggtaggagaccaattcatatacaagagggaga
actttctttctcaaaaatggagcaaaacgttatctcattaggggaaagta
ttcagtattgatacatatgt
tttctatatttttgatattgttgaaagggtcttaaacttttccatcaaag
atcagagtatatttccaccacccatcattccttcattttctttctttctt
cttttctttcctttcctttcctttcctttcctttcctttcctttcctttc
ctttcctttcccttttccttttccttttccttttccttttccttttcctt
ttccttttccttttccttttccttttcctcccctcccctcccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8665066_8665722
seq2: B6Ng01-279N11.b_579_1215

seq1  GGGAACCTTTATTACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTTATTACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC  50

seq1  TTCCTTGCGCAGGTGATGGTTAACTCCCGTCCCGAGTTTTCTTGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCGCAGGTGATGGTTAACTCCCGTCCCGAGTTTTCTTGTATTTT  100

seq1  CTCGTCCCGGATTTTCTCGTCCCGGGTTTCAGCACCAACTCTTAAACGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCCCGGATTTTCTCGTCCCGGGTTTCAGCACCAACTCTTAAACGCG  150

seq1  TTCTCACGACCGGCCAGGAAGAACACAACAAACCAGAATCTTCTGCGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACGACCGGCCAGGAAGAACACAACAAACCAGAATCTTCTGCGGCA  200

seq1  AAACTTTATTGCTTACATCTTCAGGAGCAGGAGCGCAAGCCCCCAGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATTGCTTACATCTTCAGGAGCAGGAGCGCAAGCCCCCAGCCCC  250

seq1  AAAAACGAAAGCCCCCCAAAACGAAAGCGAAACCCCGTCCCTATTTAGGA  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAAACGAAAGCCCCCCAAAACGAAAGCGAAACCCTGTCCCTATTTAGGA  300

seq1  GAGTTATCCTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATCCTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCAT  350

seq1  -GGCCGAGTTGACGTCACGGGAAAGGCAGAGTACATGTAGT-GGAAAATT  398
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGCCGAGTTGACGTCACGGGAAAGGCAGAGTACATGTAGTGGGAAAATT  400

seq1  ACTCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATG  450

seq1  GCAGCGCCATCTTGTGACGGCGAAT-GTGGGGGCGGCTCCCAACACAACG  497
      |||||| |||| ||||||||||||| |||||||  |||||| |||| |||
seq2  GCAGCG-CATC-TGTGACGGCGAATGGTGGGGGGCGCTCCC-ACAC-ACG  496

seq1  AGGCTGATTTA-TTTTTTAAGACATTCCTAAGTTGCCTGCAGAGGGTAGG  546
      | ||||||||| |||||||||||||  ||||||   ||||||||||||||
seq2  A-GCTGATTTATTTTTTTAAGACAT--CTAAGT--GCTGCAGAGGGTAGG  541

seq1  AAGACACATTCATATACAAGA-GGAGAACTTTTCTTTCTTAAAAAAATGG  595
       ||||  |||||||||||||| ||||||| |||||||||   ||||||||
seq2  -AGACCAATTCATATACAAGAGGGAGAAC-TTTCTTTCT--CAAAAATGG  587

seq1  AGGAAAACATTATAATGTTTAATAAGGGGGGAAAAGGTAATTCAAGAATT  645
      || ||||| |||     | | || |||||   ||||   |||||  |  |
seq2  AGCAAAACGTTA-----TCTCATTAGGGG---AAAG--TATTCAGTA--T  625

seq1  TGATACATATGT  657
      ||||||||||||
seq2  TGATACATATGT  637

seq1: chr7_7629731_7630015
seq2: B6Ng01-279N11.g_73_318

seq1  TTTCTATATTTTTGATATTGTTGAAAGGGTCTTAAACTTTTCCATCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATTTTTGATATTGTTGAAAGGGTCTTAAACTTTTCCATCAAAG  50

seq1  ATCAGAGTATATTTCCACCACCCATCATTCCTTCATTTTCTTTCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTATATTTCCACCACCCATCATTCCTTCATTTTCTTTCTTTCTT  100

seq1  CTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTC  150

seq1  CTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTT  200

seq1  TTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTT  250
      |||||||||||||||||||||||||                         
seq2  TTCCTTTTCCTTTTCCTTTTCCTTT-------------------------  225

seq1  CCTCTCCTCTCCTCTCCTCCCCTCCCCTCCCCTCC  285
                    |||||||||||||||||||||
seq2  --------------TCCTCCCCTCCCCTCCCCTCC  246