BAC Information

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BAC

Clone NameB6Ng01-279O16
Chromosome7 (Build37)
Map Location 62,118,510 - 62,261,332
singlet/doubletdoublet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279O16.bB6Ng01-279O16.g
ACCGA079775GA079776
length1,186670
definitionB6Ng01-279O16.b B6Ng01-279O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,118,510 - 62,119,682)(62,260,330 - 62,261,332)
sequence
gaattcttagttttgagttcaaattaccgagctcagtcctgcagccttga
agtaatcctgcattctcttttttaagaggctgacatgtggatgctaatca
aagtcatcctgaaagttatttggtctgaagtatgtgccataaagcaattg
aagcaatatggttagtgacgtctgaaaaagtagtcagcttatatgatgag
catacagttattgttcgccattgtgaagacacactatttctcccaacttc
ctgctccctttagcaagcttaatacctatttgtctagggtcatcaattga
tatggatatggctttaatttccgcgtgctgaattatatgttaaagaaaat
cattagttttctcaaaattcactggtgattgcctaacagcttccacagat
tgttatgtttaaaaattgtaaacatagctcatactgcaaaacaaggtatt
acacattaactatgaatacagccatatttatgtaaattgaaccgctaaag
ctgtaaaaatacctcaaacttcattttttttgacaagtaacagtatttgc
ttgcgtgtacatggaatacattgctgcaggcagcacatgggcatctctcc
tttgccttataatagtaatgacatttaagcttctctaggttataagaagc
caaagttgaggaaataacattttggtaacaaataaaagaagacacggttt
atacttagatgtctcccccttccatgttctgattttaaattttaatactg
caccattcaattaactaaatcaaaagtactctggttctaatatggagaca
ttaaaatatccaagtgcaatgtacatgctgctaattcaacaaagaaattc
atcgcatgttcgacacatttccataacttggaaatacacaagttaaatgc
taattctcagcatgagcataccacgccctgaactttttccatttgagact
tgcagcagttgtcagacaaacctgttggatttattaaattatgactaaca
tggtaaaacataagtctaccacattttatcctcactgtctgtaatatacc
atataacatttatacaccattccataaatatgtttctatatgccatgtac
aaataatgaaatagaaagcatgttggtatttgaaatttaaggccattata
gttctggtaccattaaaaagttgtatcttgaagtct

gaattctctctgcacatattctattttatgacccaataaaggaagctgtt
tagcagtagggggtctgcattacatgagcttactgaaagtgttctttgga
ttagaagttaggagtgaaaaacacccttcacgtttgtctcctaactagag
gacatgatatataccaagaggcaggggatgaggaagggggtcgttttcta
tagagcaagctccaaatctgggcacgaccaggtatcatactttcagagaa
acacatttcaagatgaataaatgtttcctggtgttggtatgaactctgtc
cctctcacaagaaaattggtttcttatttgtcaagtctaaatttacattg
agaaatgccctgcattttattaaagtcttagctctgaattcaccttgttt
tcctctgatgtatttcagacttaattgacatatgttaaagtagctgtcta
tctgagcatgcatatgcactttaggtatttggtccatgtttttaagtaaa
tgatacttaagacctggagctagctaagaagtagtacagttctatttggg
gacatatattgtctgatacagttagtgctttatgatacattcttgtttca
atgacaatgagcaaattggagtgcaggaaaagaattccaggctaggtttg
gatgggggttggggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_62118510_62119682
seq2: B6Ng01-279O16.b_47_1232

seq1  GAATTCTTAGTTTTGAGTTCAAATTACCGAGCTCAGTCCTGCAGCCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTTTGAGTTCAAATTACCGAGCTCAGTCCTGCAGCCTTGA  50

seq1  AGTAATCCTGCATTCTCTTTTTTAAGAGGCTGACATGTGGATGCTAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCTGCATTCTCTTTTTTAAGAGGCTGACATGTGGATGCTAATCA  100

seq1  AAGTCATCCTGAAAGTTATTTGGTCTGAAGTATGTGCCATAAAGCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCCTGAAAGTTATTTGGTCTGAAGTATGTGCCATAAAGCAATTG  150

seq1  AAGCAATATGGTTAGTGACGTCTGAAAAAGTAGTCAGCTTATATGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATATGGTTAGTGACGTCTGAAAAAGTAGTCAGCTTATATGATGAG  200

seq1  CATACAGTTATTGTTCGCCATTGTGAAGACACACTATTTCTCCCAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTTATTGTTCGCCATTGTGAAGACACACTATTTCTCCCAACTTC  250

seq1  CTGCTCCCTTTAGCAAGCTTAATACCTATTTGTCTAGGGTCATCAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCTTTAGCAAGCTTAATACCTATTTGTCTAGGGTCATCAATTGA  300

seq1  TATGGATATGGCTTTAATTTCCGCGTGCTGAATTATATGTTAAAGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATATGGCTTTAATTTCCGCGTGCTGAATTATATGTTAAAGAAAAT  350

seq1  CATTAGTTTTCTCAAAATTCACTGGTGATTGCCTAACAGCTTCCACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTTTCTCAAAATTCACTGGTGATTGCCTAACAGCTTCCACAGAT  400

seq1  TGTTATGTTTAAAAATTGTAAACATAGCTCATACTGCAAAACAAGGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTTTAAAAATTGTAAACATAGCTCATACTGCAAAACAAGGTATT  450

seq1  ACACATTAACTATGAATACAGCCATATTTATGTAAATTGAACCGCTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAACTATGAATACAGCCATATTTATGTAAATTGAACCGCTAAAG  500

seq1  CTGTAAAAATACCTCAAACTTCATTTTTTTTGACAAGTAACAGTATTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAATACCTCAAACTTCATTTTTTTTGACAAGTAACAGTATTTGC  550

seq1  TTGCGTGTACATGGAATACATTGCTGCAGGCAGCACATGGGCATCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGTACATGGAATACATTGCTGCAGGCAGCACATGGGCATCTCTCC  600

seq1  TTTGCCTTATAATAGTAATGACATTTAAGCTTCTCTAGGTTATAAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTATAATAGTAATGACATTTAAGCTTCTCTAGGTTATAAGAAGC  650

seq1  CAAAGTTGAGGAAATAACATTTTGGTAACAAATAAAAGAAGACACGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAGGAAATAACATTTTGGTAACAAATAAAAGAAGACACGGTTT  700

seq1  ATACTTAGATGTCTCCCCCTTCCATGTTCTGATTTTAAATTTTAATACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGATGTCTCCCCCTTCCATGTTCTGATTTTAAATTTTAATACTG  750

seq1  CACCATTCAATTAACTAAATCAAAAGTACTCTGGTTCTAATATGGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCAATTAACTAAATCAAAAGTACTCTGGTTCTAATATGGAGACA  800

seq1  TTAAAATATCCAAGTGCAATGTACATGCTGCTAATTCAACAAAGAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATCCAAGTGCAATGTACATGCTGCTAATTCAACAAAGAAATTC  850

seq1  ATCGCATGTTCGACACATTTCCATAACTTGGAAATACACAAGTTAAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATGTTCGACACATTTCCATAACTTGGAAATACACAAGTTAAATGC  900

seq1  TAATTCTCAGCATGAGCATA-CACG-CCTGAACTTTTTCCATTTGAGACT  948
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TAATTCTCAGCATGAGCATACCACGCCCTGAACTTTTTCCATTTGAGACT  950

seq1  TGCAGCAGTTGTCAGACAAAACTGTTGGATTTATTAAATTATGACTAACA  998
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCAGCAGTTGTCAGACAAACCTGTTGGATTTATTAAATTATGACTAACA  1000

seq1  TGGTAAAACATAAGTCTACCACATTTTATCTCAACTGTCTGT-ATATACA  1047
      ||||||||||||||||||||||||||||||   ||||||||| |||||| 
seq2  TGGTAAAACATAAGTCTACCACATTTTATCCTCACTGTCTGTAATATACC  1050

seq1  ATAT-ACATTTATACA-CATT-CATAAATATGTTTCTATAATGCATGTAC  1094
      |||| ||||||||||| |||| ||||||||||||||||||   |||||||
seq2  ATATAACATTTATACACCATTCCATAAATATGTTTCTATATGCCATGTAC  1100

seq1  AAAT-ATGAAATAG-AAGCATGTT-GTATTTGAAATATAAG--CA-TATA  1138
      |||| ||||||||| ||||||||| ||||||||||| ||||  || ||||
seq2  AAATAATGAAATAGAAAGCATGTTGGTATTTGAAATTTAAGGCCATTATA  1150

seq1  GTATCTTGTACCATAAAAATGTTGTAT-TTG-AGTCT  1173
      || ||| ||||||| |||| ||||||| ||| |||||
seq2  GT-TCTGGTACCATTAAAAAGTTGTATCTTGAAGTCT  1186


seq1: chr7_62260330_62261332
seq2: B6Ng01-279O16.g_66_735 (reverse)

seq1  CCTCCTCCCTGCCCCCTGTCTCCACTGGGATGTTCCCACCCCATCCCCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCAACCCCCCACACCACCAGACCCCTAAACTCCCTGGGGCCTCCAGTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGAGGGTTAGATGCGTGGATTTTATTCTTTAAGTCATATTTAGCATG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTAAACTCTCAACACATTTTAAAAAAGTTTTCTGCCTATGAATGAACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAAATAATACAGCAATAATGATGATCTAATTTTGTCAAGATAGATAGGCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGTGAAGCAAATTTCAGGAATTTTAAATTCAACTGAACTGCATTTCAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGAAAGCCATGTTGACCAAGGCACCATACTACCTCCT-CCCAACCCC  349
                                        |||||| |||||||||
seq2  ----------------------------------CCTCCTCCCCAACCCC  16

seq1  CATCCAAACCTAGCCTGGAATTCTTTTCCTGCACTCCAATTTGCTCATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAACCTAGCCTGGAATTCTTTTCCTGCACTCCAATTTGCTCATTG  66

seq1  TCATTGAAACAAGAATGTATCATAAAGCACTAACTGTATCAGACAATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAACAAGAATGTATCATAAAGCACTAACTGTATCAGACAATATA  116

seq1  TGTCCCCAAATAGAACTGTACTACTTCTTAGCTAGCTCCAGGTCTTAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAAATAGAACTGTACTACTTCTTAGCTAGCTCCAGGTCTTAAGT  166

seq1  ATCATTTACTTAAAAACATGGACCAAATACCTAAAGTGCATATGCATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTACTTAAAAACATGGACCAAATACCTAAAGTGCATATGCATGCT  216

seq1  CAGATAGACAGCTACTTTAACATATGTCAATTAAGTCTGAAATACATCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGACAGCTACTTTAACATATGTCAATTAAGTCTGAAATACATCAG  266

seq1  AGGAAAACAAGGTGAATTCAGAGCTAAGACTTTAATAAAATGCAGGGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAAGGTGAATTCAGAGCTAAGACTTTAATAAAATGCAGGGCAT  316

seq1  TTCTCAATGTAAATTTAGACTTGACAAATAAGAAACCAATTTTCTTGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATGTAAATTTAGACTTGACAAATAAGAAACCAATTTTCTTGTGA  366

seq1  GAGGGACAGAGTTCATACCAACACCAGGAAACATTTATTCATCTTGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAGAGTTCATACCAACACCAGGAAACATTTATTCATCTTGAAAT  416

seq1  GTGTTTCTCTGAAAGTATGATACCTGGTCGTGCCCAGATTTGGAGCTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTCTGAAAGTATGATACCTGGTCGTGCCCAGATTTGGAGCTTGC  466

seq1  TCTATAGAAAACGACCCCCTTCCTCATCCCCTGCCTCTTGGTATATATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAAAACGACCCCCTTCCTCATCCCCTGCCTCTTGGTATATATCA  516

seq1  TGTCCTCTAGTTAGGAGACAAACGTGAAGGGTGTTTTTCACTCCTAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTAGTTAGGAGACAAACGTGAAGGGTGTTTTTCACTCCTAACTT  566

seq1  CTAATCCAAAGAACACTTTCAGTAAGCTCATGTAATGCAGACCCCCTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCAAAGAACACTTTCAGTAAGCTCATGTAATGCAGACCCCCTACT  616

seq1  GCTAAACAGCTTCCTTTATTGGGTCATAAAATAGAATATGTGCAGAGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACAGCTTCCTTTATTGGGTCATAAAATAGAATATGTGCAGAGAGA  666

seq1  ATTC  1003
      ||||
seq2  ATTC  670


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