BAC Information

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BAC

Clone NameB6Ng01-280H02
Chromosome7 (Build37)
Map Location 11,327,706 - 11,328,794
singlet/doubletsinglet
Overlap geneLOC333184
Upstream geneLOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b
Downstream geneV1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H02.bB6Ng01-280H02.g
ACCGA080166GA080167
length1,1731,088
definitionB6Ng01-280H02.b B6Ng01-280H02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggatttccgaatggctgagaagcacctgaaaaaatc
ttcaacatcctttatcatcagggaaatgcaaatcaaaacaagcctgagat
tccatctcacatcagtaggaatggctaaggtcaaaatttcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttgtta
tgattgcaagcttgtacaaccactctggaaatcaatctggcggtttctca
gaaaagtggacatagtactaacggaggattctgcaatacctctcctgggc
atatatccagaagatgttccaacccctaaggaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaaaaaccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatgtacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
agggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacacaatatgtacccactgacaagtggatattagcccagaaac
ttaggatacccaagatataagatataatttgctaaacacatgaaactcaa
gaagaatgaagaacaaaatgtggacactgtgccccatcttagaattggga
acaaaacacccatggaaggagttacagagacacagtttgaagctgagacg
agaggatggatcatctagagattgccatatccgggggtccatcccataat
cagcttccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggaccctgttatagctgtctcttttgagactatgccggggccctatcaa
acacagaagtggatgctctcagtcagctattggatggatcacagggcccc
caatggaggagctagagaaagtacccaaggagctaaagggatctgcaccc
ttattagtggaacaacaatatgaactaccagtactctgtagctgtgtctc
tagctgcaatatatataatcagaagatgcttgttcagcatcagtgtaaag
aagtccatgatcgtgcaaattttatctggctcatacagggcatgcaggac
aaagtatggaacttggtggggtt
gaattcttttgctcttctgctctgctcttaatcaaggtggtggtatggcc
acaacttgactctctttatcccaaattcaaaagagttatgtgctgtcacc
aagtgtgtacactttttcctgtcatcatgtgtgagatttaaaatgaggag
gttggttgtttgtcatcacctttgaaatgagtgatttccataaaaatgtg
ctttttacatgcacaaggtctaaaccaaggatggagaatggagttgggtg
tgaaaattccactcctctctgttgatctgtaattgttagcttctgggaag
gtcaattttcgttaagaactgtccctgtccacattctagtaaaagaccac
atgttcaagaatacttggataatacatattggcattgatgggagagcaag
ggatgacataaatttgggtggaaagagaaaaaggatggatttgggaagtg
ttaagagggtggagagcatgaatatgatcaaaacacatgatattaaattc
tcaaaaataataaaattataaaatgtgcattttaaataccttcatcagga
aacagaagagaataacacctaactcaattgctagtaggactaaaagtcaa
gttagcctttctcaggatctcagtatttgccattatccttggaaggtaag
ataggctgaaagttacagagatgacccagcagttaagttcctagactgtt
cctgtagaacataagttcacttccaaatacctgtgacagacacttcacag
ctacttgaaacttcaactcttaagggatctgacgtccacttgtggccatt
gcagttacgtatgctcatgtattcacacacacacacacacacacacacac
acacacacacacacacacacacacacacaaaaactcacaccactcacaca
cacccacaaacctatgatgcattattatttgaaccagtagatttggataa
tgccgaagggactctttaatacaaaacataaacatcaacaatatccgtta
ttcttgatgtcagaccttggttaaagggcctttcatgcatagcaataaaa
cttccctagaaaacttttaagggtacattatgcctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11327706_11328794
seq2: B6Ng01-280H02.g_68_1155 (reverse)

seq1  TCCAGGCAATAATGTTACCCTAAAAGTTTTCTAGGGAAGTTTTAATTGGC  50
      ||||||| |||||||  || ||||||||||||||||||||||||  | ||
seq2  TCCAGGC-ATAATGTACCCTTAAAAGTTTTCTAGGGAAGTTTTA--TTGC  47

seq1  TATGCATGAAAAGCCC-TTAACCAAGGTCTGAACATCAAG-ATAACGGAT  98
      ||||||||||| |||| |||||||||||||| |||||||| |||||||||
seq2  TATGCATGAAAGGCCCTTTAACCAAGGTCTG-ACATCAAGAATAACGGAT  96

seq1  ATTGTTGATGTTTTATGTTTTGTATTAAAGAGTCCCTTCGGCATTATCCA  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGATG-TTTATGTTTTGTATTAAAGAGTCCCTTCGGCATTATCCA  145

seq1  AATCTACTGGTTCAAATATTAATGCATCATAGGTTTGTGTGTGTGTGTGT  198
      |||||||||||||||||| |||||||||||||||||||| ||||||||| 
seq2  AATCTACTGGTTCAAATAATAATGCATCATAGGTTTGTGGGTGTGTGTGA  195

seq1  GT-GTGTGTGTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  247
      || ||||| || ||| ||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGAGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  245

seq1  TGTGTGTGTGTGTGTGTGTGAATACATGAGCATACGTAACTGCAATGGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGAATACATGAGCATACGTAACTGCAATGGCC  295

seq1  ACAAGTGGACGTCAGATCCCTT-AGAGTTGAAGTTTCAAGTAGCTGTGAA  346
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAAGTGGACGTCAGATCCCTTAAGAGTTGAAGTTTCAAGTAGCTGTGAA  345

seq1  GTGTCTGTCACAGGTATTTGGAAGTGAACTTATGTTCTACAGGAACAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTCACAGGTATTTGGAAGTGAACTTATGTTCTACAGGAACAGTC  395

seq1  TAGGAACTTAACTGCTGGGTCATCTCTGTAACTTTCAGCCTATCTTACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTTAACTGCTGGGTCATCTCTGTAACTTTCAGCCTATCTTACCT  445

seq1  TCCAAGGATAATGGCAAATACTGAGATCCTGAGAAAGGCTAACTTGACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGATAATGGCAAATACTGAGATCCTGAGAAAGGCTAACTTGACTT  495

seq1  TTAGTCCTACTAGCAATTGAGTTAGGTGTTATTCTCTTCTGTTTCCTGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTACTAGCAATTGAGTTAGGTGTTATTCTCTTCTGTTTCCTGAT  545

seq1  GAAGGTATTTAAAATGCACATTTTATAATTTTATTATTTTTGAGAATTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATTTAAAATGCACATTTTATAATTTTATTATTTTTGAGAATTTA  595

seq1  ATATCATGTGTTTTGATCATATTCATGCTCTCCACCCTCTTAACACTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGTGTTTTGATCATATTCATGCTCTCCACCCTCTTAACACTTCC  645

seq1  CAAATCCATCCTTTTTCTCTTTCCACCCAAATTTATGTCATCCCTTGCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCATCCTTTTTCTCTTTCCACCCAAATTTATGTCATCCCTTGCTC  695

seq1  TCCCATCAATGCCAATATGTATTATCCAAGTATTCTTGAACATGTGGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCAATGCCAATATGTATTATCCAAGTATTCTTGAACATGTGGTCT  745

seq1  TTTACTAGAATGTGGACAGGGACAGTTCTTAACGAAAATTGACCTTCCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGAATGTGGACAGGGACAGTTCTTAACGAAAATTGACCTTCCCA  795

seq1  GAAGCTAACAATTACAGATCAACAGAGAGGAGTGGAATTTTCACACCCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAACAATTACAGATCAACAGAGAGGAGTGGAATTTTCACACCCAA  845

seq1  CTCCATTCTCCATCCTTGGTTTAGACCTTGTGCATGTAAAAAGCACATTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTCCATCCTTGGTTTAGACCTTGTGCATGTAAAAAGCACATTT  895

seq1  TTATGGAAATCACTCATTTCAAAGGTGATGACAAACAACCAACCTCCTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAAATCACTCATTTCAAAGGTGATGACAAACAACCAACCTCCTCA  945

seq1  TTTTAAATCTCACACATGATGACAGGAAAAAGTGTACACACTTGGTGACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTCACACATGATGACAGGAAAAAGTGTACACACTTGGTGACA  995

seq1  GCACATAACTCTTTTGAATTTGGGATAAAGAGAGTCAAGTTGTGGCCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAACTCTTTTGAATTTGGGATAAAGAGAGTCAAGTTGTGGCCATA  1045

seq1  CCACCACCTTGATTAAGAGCAGAGCAGAAGAGCAAAAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCTTGATTAAGAGCAGAGCAGAAGAGCAAAAGAATTC  1088