BAC Information

Click to search

BAC

Clone NameB6Ng01-280J08
Chromosome7 (Build37)
Map Location 31,935,517 - 31,936,314
singlet/doubletsinglet
Overlap geneGramd1a
Upstream geneZfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b
Downstream geneLOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280J08.bB6Ng01-280J08.g
ACCGA080274GA080275
length1,210798
definitionB6Ng01-280J08.b B6Ng01-280J08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaactagactcgagggtggtccaagagtattgggtcatgcag
tccttagacagctggtgttctggtgttccccggaggagggtcccaaccat
atggggtgctatgagttataagatcctgacccttagtttcattagactaa
cagtagccaccatagctcttagacaggtgggccaatcctgtggccagagg
gtccaaccatttggtcaggtatgtcagaggatgaaagataaaactttcaa
ttgcatgggagctgcaattgttgtgttaactgaaatgatttgggctgaag
ccaggtggctcagctcagagagcagaactgatcgatctgacacaggctct
cagatagcgaaaaggaaagtcggccaccatatacaccacgttcagtgctt
ttactaaggggtatgatctataaagaaagagggcttctcaccattgggta
aaaggacattaagaaaaaaaaaatcttggccctcttagaggctatttggc
ttctgtcgtccattgccaggctgctgacttggctgtctgacaaacagtcc
taagaccagtcaggcctgttgatattcagatgacatactacttggtactg
cctgagactctggtaaagaaatggacaactcacacccacaggttgatgga
gaacaccagagggaaagaccattttcccaggaacaactggcaggactctg
gtaactgacctttatcaccaggttattcatctggggtccacagaactgag
ttactcagatcacagtatgtttgttacacctgcacttagtcagcctagcc
caggatgtctcagccagatgccaggcttgtactcaagtgaaacttaaaca
tagaacctttacccaggaaggggtccaaatgagagaccaacacacctgcc
aactctgggaacactggcttcacaaagatcagcctgccaggggaaggata
aaagtacttgctagtttttaaagatacctttttcaggtaggtagtagtgt
tcctcaacccaaacagacactgctcagatagtaactagaaagctctccgg
gaactgatcctgactagcttccccctagcatggggtctggcgtagcctgc
cttcaataggaaaactcttattatagctaaagctttgaacatgaggtaaa
ctcaatggccatatagtctcaagtcctggtcctgtgattaagacgtacct
gagtacatta
gaattcattatgtagcccaagctggcctcgaactcatgccaatcctcctg
tctcagcctctgggatgtgaggcgtgcgctatcacgccccgcccaggctg
ctcattttaaataaaaattttcttctgtctcccagccggactctttcccc
agccatcctaggcctaggcccgcgctcgcgtccatgtccccctcccggcg
ggggcggcgccgtgacgcgcggggcgggagcaggaagggggtgtcgctga
cgccgaggcggcctccggcggctccggccttttgtgcgggtggcagggtc
cggtggaggcggcggccgaggcaggcgaggcccgggaggcccatctcaga
gcagccggccgggtcctgccctgcagccggggcgccgcatccatgttcga
gtaagcaccgggcctcggggtgggaagcggggacggtggtgcgatcgggc
tgcggcagagggccggagctgggtttccaagctggtgcatgtaggagcga
ccccgctggggaccagaaggggtacacgtgagggattgcaacctggcggc
gagacccaagattggggcgtcactaccggcctgggacgcatatgggcagc
ggggagctcctctaggccctgatcgtccccctacggggagccctgaccca
acacccagatgaaagggccgcgagcagccccaccccccatccccattact
gggcaggccccgcagatcctccggtcggtggtccccgtttgtcgtggggg
ctggggaaaaggagcttctttgagcctgagatctcggcggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_31935517_31936314
seq2: B6Ng01-280J08.g_69_866 (reverse)

seq1  CCCCCACCCCGCCGAGATCTCAGGCTCAAAGAAGCTCCTTTTCCCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCGCCGAGATCTCAGGCTCAAAGAAGCTCCTTTTCCCCAGCC  50

seq1  CCCACGACAAACGGGGACCACCGACCGGAGGATCTGCGGGGCCTGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGACAAACGGGGACCACCGACCGGAGGATCTGCGGGGCCTGCCCAG  100

seq1  TAATGGGGATGGGGGGTGGGGCTGCTCGCGGCCCTTTCATCTGGGTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGATGGGGGGTGGGGCTGCTCGCGGCCCTTTCATCTGGGTGTTG  150

seq1  GGTCAGGGCTCCCCGTAGGGGGACGATCAGGGCCTAGAGGAGCTCCCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGCTCCCCGTAGGGGGACGATCAGGGCCTAGAGGAGCTCCCCGC  200

seq1  TGCCCATATGCGTCCCAGGCCGGTAGTGACGCCCCAATCTTGGGTCTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATATGCGTCCCAGGCCGGTAGTGACGCCCCAATCTTGGGTCTCGC  250

seq1  CGCCAGGTTGCAATCCCTCACGTGTACCCCTTCTGGTCCCCAGCGGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGTTGCAATCCCTCACGTGTACCCCTTCTGGTCCCCAGCGGGGTC  300

seq1  GCTCCTACATGCACCAGCTTGGAAACCCAGCTCCGGCCCTCTGCCGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTACATGCACCAGCTTGGAAACCCAGCTCCGGCCCTCTGCCGCAGC  350

seq1  CCGATCGCACCACCGTCCCCGCTTCCCACCCCGAGGCCCGGTGCTTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCGCACCACCGTCCCCGCTTCCCACCCCGAGGCCCGGTGCTTACTC  400

seq1  GAACATGGATGCGGCGCCCCGGCTGCAGGGCAGGACCCGGCCGGCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGATGCGGCGCCCCGGCTGCAGGGCAGGACCCGGCCGGCTGCTC  450

seq1  TGAGATGGGCCTCCCGGGCCTCGCCTGCCTCGGCCGCCGCCTCCACCGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGGCCTCCCGGGCCTCGCCTGCCTCGGCCGCCGCCTCCACCGGA  500

seq1  CCCTGCCACCCGCACAAAAGGCCGGAGCCGCCGGAGGCCGCCTCGGCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCACCCGCACAAAAGGCCGGAGCCGCCGGAGGCCGCCTCGGCGTC  550

seq1  AGCGACACCCCCTTCCTGCTCCCGCCCCGCGCGTCACGGCGCCGCCCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACACCCCCTTCCTGCTCCCGCCCCGCGCGTCACGGCGCCGCCCCCG  600

seq1  CCGGGAGGGGGACATGGACGCGAGCGCGGGCCTAGGCCTAGGATGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGGGGGACATGGACGCGAGCGCGGGCCTAGGCCTAGGATGGCTGG  650

seq1  GGAAAGAGTCCGGCTGGGAGACAGAAGAAAATTTTTATTTAAAATGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGTCCGGCTGGGAGACAGAAGAAAATTTTTATTTAAAATGAGCA  700

seq1  GCCTGGGCGGGGCGTGATAGCGCACGCCTCACATCCCAGAGGCTGAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCGGGGCGTGATAGCGCACGCCTCACATCCCAGAGGCTGAGACA  750

seq1  GGAGGATTGGCATGAGTTCGAGGCCAGCTTGGGCTACATAATGAATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTGGCATGAGTTCGAGGCCAGCTTGGGCTACATAATGAATTC  798