BAC Information

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BAC

Clone NameB6Ng01-280L11
Chromosome7 (Build37)
Map Location 51,606,164 - 51,715,304
singlet/doubletdoublet
Overlap geneShank1, 1700008O03Rik, Syt3, Lrrc4b
Upstream geneSiglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a
Downstream gene0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L11.bB6Ng01-280L11.g
ACCGA080374GA080375
length9731,050
definitionB6Ng01-280L11.b B6Ng01-280L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,714,337 - 51,715,304)(51,606,164 - 51,607,222)
sequence
gaattcacacggaaccacggatgacttgaattccaaatctttctgcttcc
acctacccggtgttgagattacaggctctccagcatgtgatttatacagc
agtgctgggggctgcaacccaggactttctgcatgccaggcaggcaatct
accaactgcatcctaactcaaggtcccctaagggaccatgcacggtcctg
gcttgaagcagttcatcctccatggctatcacctttccccttccgtcatg
cttcctccttatcgcatgtcctgacaagctcctcggaaccgcaggctcac
tcctgcctccgagcctgtgtctctgctgttccccgaggctctaagcaccg
gcctactacctctcacggccaagtcctcgtctgccctttccaccttgctc
tggaggatgtcttggttgtgtccctcatgggtgtggggtgcccgtgtggc
tgtgtcacccttggttctgggtttatgagagcggagctgcccttctgcag
cagaacgacttttaaatcagcccctctcagaactcctgtgtaggacaccc
attttttcttagtgctgggtaacccggagcctgaagggctctcagattaa
tccgatcacagagtcacaccccccagctcctcacttgtgccactgagcca
caagcacatttcatgcggacattcatgaagtcagagaacagcctaggcac
cttggtaattcttggagctgttgtggttttatggggaaagagatgaggag
ggacgagagagcagaacatggggactcatgcatataattaatcccagtac
tcaggactctgagacagggggattattgtgagttgggaggccaccctggc
tatgagtctcaaccccacccattacccgtagcccttaagaagaaaactca
gaaactctcactgtggtaagtaaagtggcttggagtctggactgagattt
caagttgtaaggggacaggagaa
gaattctcccaggacttgctttctagcttctgtgtgcctcgtctctgcca
tgaaagagctcagaggagaaagtaatttccttttggagtgtggagaactc
tgactgatccctcttcgctctcttttctctcttcctctaactgctgcccc
gaagtcgagctttgatcctcaccaccgctcccagccaagttatgaccggc
cttctttcctgcctcccggacctggccttatgctccggcagaaatctatc
ggtatgtcccccagaaaggaccgtagcccaggggcaggagaggactgtct
aggtttggaaatgtgctgcagcaccacatccgaccctggttagaggaggt
cgggtttggatgaattccaactttgcttctcgcctgcgggactgcgtggg
tggtctctcggcttcctgaccttcatctagaaaaccggggtctttggtgt
ccagaggaaggattgttggtagcatgcgggtagtaagtggaggcagatcc
ttgttgagagagaagctagctacttcctaggcgtctctgtgtaaaataat
agccttttcttcttctcaagcacgctttaaactcgctccaagtcaccatt
atcatggattcaggcctttgactaattaggaaatggctccccctcctggc
cagagggtgaaattccactgaatttctcttgcgcctctgctgttgtatag
cttgtatgcagaaggagctgggccagtccctaattcctccattggtctta
cgtatctcaacaggggctgcggaagatgacagaccctacctagcaccccc
agccatgaaattcagtcggtagcctgtcagtcccgggttcagaggacata
cccccaccacccactacatccccaccagagccgccctatagcacacctcc
gggcccctcttcttccgtcgcctcactcctcgctcgggagggccctttaa
ccctggttccggggtcccttccggctctcacctcatctttcgatgggcca
tctcttctgaccccggtagtgggggctgaagagaagagctatatcacagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_51714337_51715304
seq2: B6Ng01-280L11.b_43_1015 (reverse)

seq1  TTCT-CTGT-CCCTTAC-ACTTGAAATCTCAGTCCAGACTCC-AGCCACT  46
      |||| |||| ||||||| |||||||||||||||||||||||| |||||||
seq2  TTCTCCTGTCCCCTTACAACTTGAAATCTCAGTCCAGACTCCAAGCCACT  50

seq1  TAACTTACCACAGTGAGAGTTTCTGAGTTTTCTTCTTAAGGGCTACGGGT  96
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACCACAGTGAGAGTTTCTGAGTTTTCTTCTTAAGGGCTACGGGT  100

seq1  -ATGGGTGGGGTTGAGACTCATAGCCCAGGGTGGCCT-CCAACTCACAAT  144
       ||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  AATGGGTGGGGTTGAGACTCATAG-CCAGGGTGGCCTCCCAACTCACAAT  149

seq1  AATCCCCCTGTCTCAGAGTCCTGAGTACTGGGATTAATTATATGCATGAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCTGTCTCAGAGTCCTGAGTACTGGGATTAATTATATGCATGAG  199

seq1  TCCCCATGTTCTGCTCTCTCGTCCCTCCTCATCTCTTTCCCCATAAAACC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGTTCTGCTCTCTCGTCCCTCCTCATCTCTTTCCCCATAAAACC  249

seq1  ACAACAGCTCCAAGAATTACCAAGGTGCCTAGGCTGTTCTCTGACTTCAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCTCCAAGAATTACCAAGGTGCCTAGGCTGTTCTCTGACTTCAT  299

seq1  GAATGTCCGCATGAAATGTGCTTGTGGCTCAGTGGCACAAGTGAGGAGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCGCATGAAATGTGCTTGTGGCTCAGTGGCACAAGTGAGGAGCT  349

seq1  GGGGGGTGTGACTCTGTGATCGGATTAATCTGAGAGCCCTTCAGGCTCCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGTGACTCTGTGATCGGATTAATCTGAGAGCCCTTCAGGCTCCG  399

seq1  GGTTACCCAGCACTAAGAAAAAATGGGTGTCCTACACAGGAGTTCTGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCCAGCACTAAGAAAAAATGGGTGTCCTACACAGGAGTTCTGAGA  449

seq1  GGGGCTGATTTAAAAGTCGTTCTGCTGCAGAAGGGCAGCTCCGCTCTCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGATTTAAAAGTCGTTCTGCTGCAGAAGGGCAGCTCCGCTCTCAT  499

seq1  AAACCCAGAACCAAGGGTGACACAGCCACACGGGCACCCCACACCCATGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGAACCAAGGGTGACACAGCCACACGGGCACCCCACACCCATGA  549

seq1  GGGACACAACCAAGACATCCTCCAGAGCAAGGTGGAAAGGGCAGACGAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAACCAAGACATCCTCCAGAGCAAGGTGGAAAGGGCAGACGAGG  599

seq1  ACTTGGCCGTGAGAGGTAGTAGGCCGGTGCTTAGAGCCTCGGGGAACAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCGTGAGAGGTAGTAGGCCGGTGCTTAGAGCCTCGGGGAACAGC  649

seq1  AGAGACACAGGCTCGGAGGCAGGAGTGAGCCTGCGGTTCCGAGGAGCTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGGCTCGGAGGCAGGAGTGAGCCTGCGGTTCCGAGGAGCTTG  699

seq1  TCAGGACATGCGATAAGGAGGAAGCATGACGGAAGGGGAAAGGTGATAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACATGCGATAAGGAGGAAGCATGACGGAAGGGGAAAGGTGATAGC  749

seq1  CATGGAGGATGAACTGCTTCAAGCCAGGACCGTGCATGGTCCCTTAGGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGATGAACTGCTTCAAGCCAGGACCGTGCATGGTCCCTTAGGGG  799

seq1  ACCTTGAGTTAGGATGCAGTTGGTAGATTGCCTGCCTGGCATGCAGAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGTTAGGATGCAGTTGGTAGATTGCCTGCCTGGCATGCAGAAAG  849

seq1  TCCTGGGTTGCAGCCCCCAGCACTGCTGTATAAATCACATGCTGGAGAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTTGCAGCCCCCAGCACTGCTGTATAAATCACATGCTGGAGAGC  899

seq1  CTGTAATCTCAACACCGGGTAGGTGGAAGCAGAAAGATTTGGAATTCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTCAACACCGGGTAGGTGGAAGCAGAAAGATTTGGAATTCAAG  949

seq1  TCATCCGTGGTTCCGTGTGAATTC  968
      ||||||||||||||||||||||||
seq2  TCATCCGTGGTTCCGTGTGAATTC  973

seq1: chr7_51606164_51607222
seq2: B6Ng01-280L11.g_67_1116

seq1  GAATTCTCCCAGGACTTGCTTTCTAGCTTCTGTGTGCCTCGTCTCTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAGGACTTGCTTTCTAGCTTCTGTGTGCCTCGTCTCTGCCA  50

seq1  TGAAAGAGCTCAGAGGAGAAAGTAATTTCCTTTTGGAGTGTGGAGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGCTCAGAGGAGAAAGTAATTTCCTTTTGGAGTGTGGAGAACTC  100

seq1  TGACTGATCCCTCTTCGCTCTCTTTTCTCTCTTCCTCTAACTGCTGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATCCCTCTTCGCTCTCTTTTCTCTCTTCCTCTAACTGCTGCCCC  150

seq1  GAAGTCGAGCTTTGATCCTCACCACCGCTCCCAGCCAAGTTATGACCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGAGCTTTGATCCTCACCACCGCTCCCAGCCAAGTTATGACCGGC  200

seq1  CTTCTTTCCTGCCTCCCGGACCTGGCCTTATGCTCCGGCAGAAATCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCTGCCTCCCGGACCTGGCCTTATGCTCCGGCAGAAATCTATC  250

seq1  GGTATGTCCCCCAGAAAGGACCGTAGCCCAGGGGCAGGAGAGGACTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCCCCCAGAAAGGACCGTAGCCCAGGGGCAGGAGAGGACTGTCT  300

seq1  AGGTTTGGAAATGTGCTGCAGCACCACATCCGACCCTGGTTAGAGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGAAATGTGCTGCAGCACCACATCCGACCCTGGTTAGAGGAGGT  350

seq1  CGGGTTTGGATGAATTCCAACTTTGCTTCTCGCCTGCGGGACTGCGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTGGATGAATTCCAACTTTGCTTCTCGCCTGCGGGACTGCGTGGG  400

seq1  TGGTCTCTCGGCTTCCTGACCTTCATCTAGAAAACCGGGGTCTTTGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCGGCTTCCTGACCTTCATCTAGAAAACCGGGGTCTTTGGTGT  450

seq1  CCAGAGGAAGGATTGTTGGTAGCATGCGGGTAGTAAGTGGAGGCAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAGGATTGTTGGTAGCATGCGGGTAGTAAGTGGAGGCAGATCC  500

seq1  TTGTTGAGAGAGAAGCTAGCTACTTCCTAGGCGTCTCTGTGTAAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGAGAGAAGCTAGCTACTTCCTAGGCGTCTCTGTGTAAAATAAT  550

seq1  AGCCTTTTCTTCTTCTCAAGCACGCTTTAAACTCGCTCCAAGTCACCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTCTTCTTCTCAAGCACGCTTTAAACTCGCTCCAAGTCACCATT  600

seq1  ATCATGGATTCAGGCCTTTGACTAATTAGGAAATGGCTCCCCCTCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGATTCAGGCCTTTGACTAATTAGGAAATGGCTCCCCCTCCTGGC  650

seq1  CAGAGGGTGAAATTCCACTGAATTTCTCTTGCGCCTCTGCTGTTGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTGAAATTCCACTGAATTTCTCTTGCGCCTCTGCTGTTGTATAG  700

seq1  CTTGTATGCAGAAGGAGCTGGGCCAGTCCCTAATTCCTCCATTGGTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGCAGAAGGAGCTGGGCCAGTCCCTAATTCCTCCATTGGTCTTA  750

seq1  CGTATCTCAACAGGGGCTGCGGAAGATGACAGACCCTACCTAGCACCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTCAACAGGGGCTGCGGAAGATGACAGACCCTACCTAGCACCCCC  800

seq1  AGCCATGAAATTCAGTC-GTAGCCTGTCAGTCCCGGGTTCAGAGGACATA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCCATGAAATTCAGTCGGTAGCCTGTCAGTCCCGGGTTCAGAGGACATA  850

seq1  CCCCCACCACCCACTACATCCCCACCAGAGCCGCCCTATAGCACACCTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCACCCACTACATCCCCACCAGAGCCGCCCTATAGCACACCTCC  900

seq1  GGCCCCCTCCTCTTCCGGCCGCCTCACTCCCTCGCCTCGGGGAGGGCCCT  949
      || |||||| |||||| | ||||||||| ||||| ||| |||||||||||
seq2  GGGCCCCTCTTCTTCC-GTCGCCTCACT-CCTCG-CTC-GGGAGGGCCCT  946

seq1  TTAACCCTGGTTCCGGGGGTCCCCTTCCCGCCTCCTCACCTTCATCTTTC  999
      ||||||||||||||||||   ||||||| ||   |||||| |||||||||
seq2  TTAACCCTGGTTCCGGGG--TCCCTTCCGGC--TCTCACC-TCATCTTTC  991

seq1  GATGGGCCATCTCCTCCTGACCCCCGTAGTGGGGGCCG-AGAGAAGAGCC  1048
      |||||||||||| || |||||||| ||||||||||| | ||||||||| |
seq2  GATGGGCCATCT-CTTCTGACCCCGGTAGTGGGGGCTGAAGAGAAGAG-C  1039

seq1  TATATCACAGT  1059
      |||||||||||
seq2  TATATCACAGT  1050