BAC Information

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BAC

Clone NameB6Ng01-280O15
Chromosome7 (Build37)11 (Build37)
Map Location 71,004,463 - 71,005,229115,594,609 - 115,594,890
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083
Downstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280O15.bB6Ng01-280O15.g
ACCGA080525GA080526
length767871
definitionB6Ng01-280O15.b B6Ng01-280O15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,004,463 - 71,005,229)(115,594,609 - 115,594,890)
sequence
gaattccatctccatccccgaggcctgtcttcttttcctcctgagccctg
caacccaagggcttctcccaccaagaactgctacaatggttcccagtaac
tcttttgcctgtacacaccagctaaccttgaatgtcctgtctaaatgttc
ccctccagagtatagggtcttaggtatgcaggaatacaggctcagacccc
ttctaaagcgggctcacaatcaggctgtgtctcagattagtctccctgcc
tccattccttaacgttcaaaggtggcagaagctctgagatgaagcagacc
aggagactgccaccctggcccaccagacccagaatgccaggcagcttcta
tagtgcagacccagatctgccttcacaagccactgcctgggagccatgac
cttctttccagtttcacctttaatacctatgtgggcaggacccccaggcc
cgctcccaccagcatgcttcagtgtgaaccaagccatcgaggtgcccgct
ttcctgaagtccctgaccctctctgtgtccagtgtcccctgatagatctc
ccctttgcttctgaaacccacagaccttggtcctttccctctgcttcccc
ttcccttcccctgagccctctattgggctcctgtatctttgtgcctcctc
ccttggaataatacttactgtccctgagtcaccctgagggctacttactc
tatttttgccactataacaaaataactgaaactggatagatgataaataa
ttggggggggggggggg
gaattcttccttgggttcaaacatgtattggaaagctcacagagttcaga
aaacaacaacaacaaaaaacctccaaacacacacacacacacacacacac
acacactgcttgcacttactggtttcattttttaacttgtatttgaatct
tatatcattttactttattttgttttattgaagccaaagccttacatgag
cctggaaactgactcaggtcctcaggcctgagtagtactgaggcatgcag
acgaagggttgggtaggagagatgcaaagggcagagtagatggaagggac
aatgagcctccgcttctcttcctcgggacatccatcctccatgggttcag
cagaagttctcaaaactgtctctgtagcccttttcagaggtctccttggg
taagcatggtgaaagacattgctgaccattaatgagaagttctgtctttt
catctgcccctgatcccaggtgtactggatggttttgtgtcaacttgaca
caagctggagttatcacagagaaaggagcttcaggtgaggaaatgccttc
catgagatccagctgtaaggcattttctcaattaatgatcaaggggggaa
aggccccttgtgggtgggaccatctctgggctggtaatcttgggttctat
aagaaagcaagctgagccgggcagtggtagcgcatgcctgtaatcccagc
acttgggaggcagaggcaggtggatttctgagtgcgaggccagcctggtg
tacaaagtgagttccaggacagccagggctacacagagaaacccagtcaa
aaaaagaaagaaagaaagaaagaaagagagagagagagagagagagagag
agagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71004463_71005229
seq2: B6Ng01-280O15.b_45_811

seq1  GAATTCCATCTCCATCCCCGAGGCCTGTCTTCTTTTCCTCCTGAGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCATCCCCGAGGCCTGTCTTCTTTTCCTCCTGAGCCCTG  50

seq1  CAACCCAAGGGCTTCTCCCACCAAGAACTGCTACAATGGTTCCCAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAGGGCTTCTCCCACCAAGAACTGCTACAATGGTTCCCAGTAAC  100

seq1  TCTTTTGCCTGTACACACCAGCTAACCTTGAATGTCCTGTCTAAATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCCTGTACACACCAGCTAACCTTGAATGTCCTGTCTAAATGTTC  150

seq1  CCCTCCAGAGTATAGGGTCTTAGGTATGCAGGAATACAGGCTCAGACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGAGTATAGGGTCTTAGGTATGCAGGAATACAGGCTCAGACCCC  200

seq1  TTCTAAAGCGGGCTCACAATCAGGCTGTGTCTCAGATTAGTCTCCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGCGGGCTCACAATCAGGCTGTGTCTCAGATTAGTCTCCCTGCC  250

seq1  TCCATTCCTTAACGTTCAAAGGTGGCAGAAGCTCTGAGATGAAGCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTTAACGTTCAAAGGTGGCAGAAGCTCTGAGATGAAGCAGACC  300

seq1  AGGAGACTGCCACCCTGGCCCACCAGACCCAGAATGCCAGGCAGCTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGCCACCCTGGCCCACCAGACCCAGAATGCCAGGCAGCTTCTA  350

seq1  TAGTGCAGACCCAGATCTGCCTTCACAAGCCACTGCCTGGGAGCCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGACCCAGATCTGCCTTCACAAGCCACTGCCTGGGAGCCATGAC  400

seq1  CTTCTTTCCAGTTTCACCTTTAATACCTATGTGGGCAGGACCCCCAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCAGTTTCACCTTTAATACCTATGTGGGCAGGACCCCCAGGCC  450

seq1  CGCTCCCACCAGCATGCTTCAGTGTGAACCAAGCCATCGAGGTGCCCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCCACCAGCATGCTTCAGTGTGAACCAAGCCATCGAGGTGCCCGCT  500

seq1  TTCCTGAAGTCCCTGACCCTCTCTGTGTCCAGTGTCCCCTGATAGATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGTCCCTGACCCTCTCTGTGTCCAGTGTCCCCTGATAGATCTC  550

seq1  CCCTTTGCTTCTGAAACCCACAGACCTTGGTCCTTTCCCTCTGCTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTTCTGAAACCCACAGACCTTGGTCCTTTCCCTCTGCTTCCCC  600

seq1  TTCCCTTCCCCTGAGCCCTCTATTGGGCTCCTGTATCTTTGTGCCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCCCTGAGCCCTCTATTGGGCTCCTGTATCTTTGTGCCTCCTC  650

seq1  CCTTGGAATAATACTTACTGTCCCTGAGTCACCCTGAGGGCTACTTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAATAATACTTACTGTCCCTGAGTCACCCTGAGGGCTACTTACTC  700

seq1  TATTTTTGCCACTATAACAAAATAACTGAAACTGGATAGATGATAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGCCACTATAACAAAATAACTGAAACTGGATAGATGATAAATAA  750

seq1  TTGGGGGGGGGGGGGTG  767
      ||||||||||||||| |
seq2  TTGGGGGGGGGGGGGGG  767

seq1: chr11_115594609_115594890
seq2: B6Ng01-280O15.g_542_814 (reverse)

seq1  CTGGCCTTGAAGTCAGAAATCCACCTGCCTCTGCCTCTGCCTCTGCCTCC  50
      ||||||| | | ||||||||||||            ||||||||||||||
seq2  CTGGCCTCGCACTCAGAAATCCAC------------CTGCCTCTGCCTCC  38

seq1  CAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCGGCTCAGCTTGCT  100
      ||||||||||||||| ||||||| || |||||||||||||||||||||||
seq2  CAAGTGCTGGGATTACAGGCATGCGCTACCACTGCCCGGCTCAGCTTGCT  88

seq1  TTTTTATAGAACCCAGGACTACCAGCCCAG-GATGGCACCACCCACAATG  149
      || |||||||||||| || ||||||||||| |||||  |||||||||| |
seq2  TTCTTATAGAACCCAAGATTACCAGCCCAGAGATGGTCCCACCCACAAGG  138

seq1  GGCC-CTCCCCTTTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATC  198
      ||||  |||||  ||||||| |||||||||||||||||||||||||||||
seq2  GGCCTTTCCCCCCTTGATCATTAATTGAGAAAATGCCTTACAGCTGGATC  188

seq1  TCATGG-AGGCATTTCCTCACCTGAAGCTCCTTTTGCTGTGATAACTCCA  247
      |||||| |||||||||||||||||||||||||||  ||||||||||||||
seq2  TCATGGAAGGCATTTCCTCACCTGAAGCTCCTTTCTCTGTGATAACTCCA  238

seq1  GCTTGTGTCAAGTTGACACAAAACCAGCCAGTACA  282
      |||||||||||||||||||||||||| ||||||||
seq2  GCTTGTGTCAAGTTGACACAAAACCATCCAGTACA  273