BAC Information

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BAC

Clone NameB6Ng01-280P09
Chromosome7 (Build37)
Map Location 130,991,762 - 131,139,339
singlet/doubletdoublet
Overlap geneEG628779
Upstream gene4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280P09.bB6Ng01-280P09.g
ACCGA080561GA080562
length1,0911,007
definitionB6Ng01-280P09.b B6Ng01-280P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,991,762 - 130,992,839)(131,138,348 - 131,139,339)
sequence
gaattcaacatcaaattaaggtccgggcctgcttccctttccactgaact
gccatcagtgatatggtggatctgttgtcattgcaggcctggaatcttat
cgtgcttcagaaaagacattttctttgcacgttggacagcctcagcagca
gttgtcatttgtctatggttccctcgacaccaggataattgaggacaact
taatcttcaccagattccccctttttttttctctttcaatcctatacttt
tagagaagctaggcaaattcctgcacaccggggaaggcatgagggaggag
agaaggatgggtttgaagctccccagctctcctgcagcagcatcctgaat
gggttttatcttctacagtcttgggtctttaggcctgaacccacttcact
cttgggagtagtgagtctagggtgtaaatttctctctgcctgcagtgacc
cgcccctctccctctacaacactcagagttgcagagcatgaaaggagcct
cctcttgctaatgccttcccgccactgggacactgggaagggctattctg
ctggggcttcctgagtggtagctcaaagtgtttcatttctattcattcta
gtctctgggttcctcaatttaatgaggtctttactattgtctttaaagag
tgctttccctcccgcagagtcaagctgttaggtggaatttgagcactgaa
gggaacaggtccggtagggcagacagagaaaaaccaacctacacaagcac
ttctgagccggctttctctggcatccctgcctctccccatgccccaaagc
tggtgtttcagtggcttcccacttactagtttgaacctgccccagtttcc
agagcagattctcttggggggatgcaggagttttatttaatagtctctat
tccccttcggaccagcaagggatgagattacaggcatatcctcagagaaa
caagagccagccggtggatcatctaatctgggctgggctgcttctccatt
tctctttctcaagcacactgctgaaatcagattgcaaacgactggaactc
aagaccctggaagccttctgtatgcccatttgttctcaacg

gaattcttgacactagaatgaggcctgaggttatgggtgtgatctttgtg
caaaaataaattgatccccttcctttctgagggtgaagtgtggagggagt
gaagtcccaggaaataaaggaaaacctcgattagatgcaatttgggactt
catggtgacatgtgacaatgtctggagccaattttttatctgccttgact
gaaggggaagtactactggcatacagtgagtaatgccagaaatgttggta
agtacacaagagtctttgggcccatctcaaacgtcaccagtaccagggct
gcaagacttcattctaaggcagttatttcttaacctcccaaatgctgcac
ccttttaatacagcttcccatgctgtggtgacccccaatgataacattat
tctcattgctacttaactgtacttttgctactgctgtgaatgttctgtat
tttctgacggactttgggggtcaccatccacaggttgagaaccactgttg
tagaacgctagttcccagttcaaatcctgctaccagtcagcagcaacaca
tctccctgagatgcaaacttctgcatcaggaaggtagggctgggctacag
attctgccaagctgaacaagctgccttggggatggtggagcaacaagaag
aaagggatgtggacccaagtgatcttgaggtgcacatacacctggggcct
ccgcctacactggctggtgtgtgaatgggttggtattcaaatttgtgctc
ctgtcgtcccctttgagcttcatttcagacttgggtttctgggtggctga
tgcttgtgcacctatgctttctgaagaacaatgttcactaccctaacaaa
gagacagaaaccccttagcttctatcagccacttcttaccttttacattc
tggaaaatactgttgtgttcatacactgtcccactccaatctgtttgcaa
agaagaaccagaaggcccttgaagatgaccttttttttttttttctaaaa
aaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_130991762_130992839
seq2: B6Ng01-280P09.b_48_1138

seq1  GAATTCAACATCAAATTAAGGTCCGGGCCTGCTTCCCTTTCCACTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCAAATTAAGGTCCGGGCCTGCTTCCCTTTCCACTGAACT  50

seq1  GCCATCAGTGATATGGTGGATCTGTTGTCATTGCAGGCCTGGAATCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAGTGATATGGTGGATCTGTTGTCATTGCAGGCCTGGAATCTTAT  100

seq1  CGTGCTTCAGAAAAGACATTTTCTTTGCACGTTGGACAGCCTCAGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTCAGAAAAGACATTTTCTTTGCACGTTGGACAGCCTCAGCAGCA  150

seq1  GTTGTCATTTGTCTATGGTTCCCTCGACACCAGGATAATTGAGGACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATTTGTCTATGGTTCCCTCGACACCAGGATAATTGAGGACAACT  200

seq1  TAATCTTCACCAGATTCCCCCTTTTTTTTTCTCTTTCAATCCTATACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCACCAGATTCCCCCTTTTTTTTTCTCTTTCAATCCTATACTTT  250

seq1  TAGAGAAGCTAGGCAAATTCCTGCACACCGGGGAAGGCATGAGGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGCTAGGCAAATTCCTGCACACCGGGGAAGGCATGAGGGAGGAG  300

seq1  AGAAGGATGGGTTTGAAGCTCCCCAGCTCTCCTGCAGCAGCATCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATGGGTTTGAAGCTCCCCAGCTCTCCTGCAGCAGCATCCTGAAT  350

seq1  GGGTTTTATCTTCTACAGTCTTGGGTCTTTAGGCCTGAACCCACTTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTATCTTCTACAGTCTTGGGTCTTTAGGCCTGAACCCACTTCACT  400

seq1  CTTGGGAGTAGTGAGTCTAGGGTGTAAATTTCTCTCTGCCTGCAGTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGTAGTGAGTCTAGGGTGTAAATTTCTCTCTGCCTGCAGTGACC  450

seq1  CGCCCCTCTCCCTCTACAACACTCAGAGTTGCAGAGCATGAAAGGAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCTCTCCCTCTACAACACTCAGAGTTGCAGAGCATGAAAGGAGCCT  500

seq1  CCTCTTGCTAATGCCTTCCCGCCACTGGGACACTGGGAAGGGCTATTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCTAATGCCTTCCCGCCACTGGGACACTGGGAAGGGCTATTCTG  550

seq1  CTGGGGCTTCCTGAGTGGTAGCTCAAAGTGTTTCATTTCTATTCATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTTCCTGAGTGGTAGCTCAAAGTGTTTCATTTCTATTCATTCTA  600

seq1  GTCTCTGGGTTCCTCAATTTAATGAGGTCTTTACTATTGTCTTTAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGTTCCTCAATTTAATGAGGTCTTTACTATTGTCTTTAAAGAG  650

seq1  TGCTTTCCCTCCCGCAGAGTCAAGCTGTTAGGTGGAATTTGAGCACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCTCCCGCAGAGTCAAGCTGTTAGGTGGAATTTGAGCACTGAA  700

seq1  GGGAACAGGTCCGGTAGGGCAGACAGAG-AAAACCAACCTACACAAGCAC  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGAACAGGTCCGGTAGGGCAGACAGAGAAAAACCAACCTACACAAGCAC  750

seq1  TTCTGAGCCGGCTTTCTCTGGCATCCCTGCCTCTCCCCATGCCCCAAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCCGGCTTTCTCTGGCATCCCTGCCTCTCCCCATGCCCCAAAGC  800

seq1  TGGTGTTTCAGTGGCTTCCCACTTACTAG-TTGAACCTGCCCCAG-TTCC  847
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TGGTGTTTCAGTGGCTTCCCACTTACTAGTTTGAACCTGCCCCAGTTTCC  850

seq1  AGAGCAGATTC-CCTGGGGGGATGCA-GAGTTT--ATTAATAGTCTCTAT  893
      ||||||||||| | |||||||||||| ||||||   ||||||||||||||
seq2  AGAGCAGATTCTCTTGGGGGGATGCAGGAGTTTTATTTAATAGTCTCTAT  900

seq1  --CCCCTCGGACCAGC-AGGGATGAGAATACAGGCATATCCTCAGAGAA-  939
        ||| |||||||||| |||||||||| ||||||||||||||||||||| 
seq2  TCCCCTTCGGACCAGCAAGGGATGAGATTACAGGCATATCCTCAGAGAAA  950

seq1  -CAGAGCCAGCCGGTGGATCATCTATCCTGGCCTGGGCTGCTTTCTCCAT  988
        |||||||||||||||||||||||  |||| ||||||||| ||||||||
seq2  CAAGAGCCAGCCGGTGGATCATCTAATCTGGGCTGGGCTGC-TTCTCCAT  999

seq1  TTCTC-TTCTCAAGCACCACTGCTGAAATCAGA-TGCAAACGACTGG-AC  1035
      ||||| |||||||||| |||||||||||||||| ||||||||||||| ||
seq2  TTCTCTTTCTCAAGCA-CACTGCTGAAATCAGATTGCAAACGACTGGAAC  1048

seq1  TCAGAGACCCTGG-AGCCCTCTGTATGCCCATGTGGTCTCAACG  1078
      ||| ||||||||| |||| ||||||||||||| || ||||||||
seq2  TCA-AGACCCTGGAAGCCTTCTGTATGCCCATTTGTTCTCAACG  1091


seq1: chr7_131138348_131139339
seq2: B6Ng01-280P09.g_65_1071 (reverse)

seq1  CTTC-TTTTCTAGAAAAAAAAAAAA---GTCATCTTC-AGGGCCTTCTGG  45
      |||| |||| |||||||||||||||   ||||||||| ||||||||||||
seq2  CTTCTTTTTTTAGAAAAAAAAAAAAAAGGTCATCTTCAAGGGCCTTCTGG  50

seq1  TTC-TCTTCGCAAACAGA-TGGAGTGGGACAGTGTATGAACAC-ACAGTA  92
      ||| |||| ||||||||| |||||||||||||||||||||||| ||||||
seq2  TTCTTCTTTGCAAACAGATTGGAGTGGGACAGTGTATGAACACAACAGTA  100

seq1  -TTTCCAGAATGTAAAA-GTAAG-AGTGGCTGATAGAAGCT-AGGGGTTT  138
       |||||||||||||||| ||||| ||||||||||||||||| ||||||||
seq2  TTTTCCAGAATGTAAAAGGTAAGAAGTGGCTGATAGAAGCTAAGGGGTTT  150

seq1  CTGTCTC-TTGTTA-GGTAGTGAACATTGTTCTTCAGAAAGCATAGGTGC  186
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTTGTTAGGGTAGTGAACATTGTTCTTCAGAAAGCATAGGTGC  200

seq1  ACAAGCATCAGCCACCCAGAAACCCAAGTCTGAAATGAAGCTC-AAGGGG  235
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAAGCATCAGCCACCCAGAAACCCAAGTCTGAAATGAAGCTCAAAGGGG  250

seq1  ACGACAGGAGCACAAATTTGAATACCAACCCATTCACACACCAGCCAGTG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAGGAGCACAAATTTGAATACCAACCCATTCACACACCAGCCAGTG  300

seq1  TAGGCGGAGGCCCCAGGTGTATGTGCACCTCAAGATCACTTGGGTCCACA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGGAGGCCCCAGGTGTATGTGCACCTCAAGATCACTTGGGTCCACA  350

seq1  TCCCTTTCTTCTTGTTGCTCCACCATCCCCAAGGCAGCTTGTTCAGCTTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTTCTTGTTGCTCCACCATCCCCAAGGCAGCTTGTTCAGCTTG  400

seq1  GCAGAATCTGTAGCCCAGCCCTACCTTCCTGATGCAGAAGTTTGCATCTC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTGTAGCCCAGCCCTACCTTCCTGATGCAGAAGTTTGCATCTC  450

seq1  AGGGAGATGTGTTGCTGCTGACTGGTAGCAGGATTTGAACTGGGAACTAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGTGTTGCTGCTGACTGGTAGCAGGATTTGAACTGGGAACTAG  500

seq1  CGTTCTACAACAGTGGTTCTCAACCTGTGGATGGTGACCCCCAAAGTCCG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTACAACAGTGGTTCTCAACCTGTGGATGGTGACCCCCAAAGTCCG  550

seq1  TCAGAAAATACAGAACATTCACAGCAGTAGCAAAAGTACAGTTAAGTAGC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATACAGAACATTCACAGCAGTAGCAAAAGTACAGTTAAGTAGC  600

seq1  AATGAGAATAATGTTATCATTGGGGGTCACCACAGCATGGGAAGCTGTAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAATAATGTTATCATTGGGGGTCACCACAGCATGGGAAGCTGTAT  650

seq1  TAAAAGGGTGCAGCATTTGGGAGGTTAAGAAATAACTGCCTTAGAATGAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGTGCAGCATTTGGGAGGTTAAGAAATAACTGCCTTAGAATGAA  700

seq1  GTCTTGCAGCCCTGGTACTGGTGACGTTTGAGATGGGCCCAAAGACTCTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAGCCCTGGTACTGGTGACGTTTGAGATGGGCCCAAAGACTCTT  750

seq1  GTGTACTTACCAACATTTCTGGCATTACTCACTGTATGCCAGTAGTACTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTACCAACATTTCTGGCATTACTCACTGTATGCCAGTAGTACTT  800

seq1  CCCCTTCAGTCAAGGCAGATAAAAAATTGGCTCCAGACATTGTCACATGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCAGTCAAGGCAGATAAAAAATTGGCTCCAGACATTGTCACATGT  850

seq1  CACCATGAAGTCCCAAATTGCATCTAATCGAGGTTTTCCTTTATTTCCTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAAGTCCCAAATTGCATCTAATCGAGGTTTTCCTTTATTTCCTG  900

seq1  GGACTTCACTCCCTCCACACTTCACCCTCAGAAAGGAAGGGGATCAATTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCACTCCCTCCACACTTCACCCTCAGAAAGGAAGGGGATCAATTT  950

seq1  ATTTTTGCACAAAGATCACACCCATAACCTCAGGCCTCATTCTAGTGTCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCACAAAGATCACACCCATAACCTCAGGCCTCATTCTAGTGTCA  1000

seq1  AGAATTC  992
      |||||||
seq2  AGAATTC  1007


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