BAC Information

Click to search

BAC

Clone NameB6Ng01-280P20
Chromosome7 (Build37)
Map Location 93,662,068 - 93,663,232
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298
Downstream geneOlfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280P20.bB6Ng01-280P20.g
ACCGA080583GA080584
length1,1851,172
definitionB6Ng01-280P20.b B6Ng01-280P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaactgcatgaaattaaagataaatttccattaacttaatgaaa
taatgtaacactttttatcaaatcctcttgcaaccactaatgattctaca
tgttataaaatattaatggcataacatttatatatataatgaatgttata
aaatgtgatagaaataaaaacaaaacagtttaagagttggatgaaacaaa
ttatctgcatcacacagctggtctcccaggagtgctgacacacatagatt
acaggtgagaccaccactccagccccaatactgggcacaagtgagacctg
cccagaactcaaaagacccagaaacctgggagcaacctgggacatgaacc
tacaggtttctatacgtaccaagagctgaccctgtgctacaacaattggc
acttcaatcccacagagagagagctggtattccaggagtgctgagacatc
aaggatcagagagagagagagagtttgtgtctaggagtgctgacaaacct
aagaccacaggctaacagcctaacaggaaggacaagctccagtcagagag
tgaatgaccacataacatcagatggcaagaggaaagcacaagaacataag
caatagaaacaaagactacttgtaatcaacagattcaagttatctcacca
cagaaattcctggataacctagcacacctggaagcaagatattggtttaa
aaatcacatctaacaatggcaacgatagaggacttaaggaaggacataaa
taacacccttaaagaaataaaggagaacacaggtaaacagttagaagccc
tttaagaggaaacatttaagtccattaatttaaatacaggaaaacacaaa
ccatcagttaaagggaattaaacaaaaccatccaggatctaaaatggaaa
tagaagcaataaaaaaatcataaaggaagaacactctgggagatggaaaa
ccaagaaaaacatcagaagtcatagatgcaagtatcacaccatatacaga
gataacagagagaatctggagtacagaagataccatagaaacattgacac
aacagtcaagaattgcaaatgcaaaagctcaaacctatatcatgaatcaa
ggaccatgaaagacataggaataataggcataccatgataatgataacga
gagaggcttcccaacctcaaggcccagcccacact
gaattccctttgttaagggacaaaatgcttgtgccagggaacaggaaatg
agcagagattcttcttcacagcataggaactaaggatggtgttccaaatg
actttattaattgccactgctattatcggggctctttaaattatgcctac
agaaatgtagctttagatatttcagcctgaacaggtttttttttttctct
aaaaaccaaaagcttcaacttacaaactataagttaagctataagctcct
ttacctctgataagtctagcttgtgtcaagttgacacacaaaaccagcca
gtacaattgaccccctttcaacttgacacacaaatacatcactaatacgt
ctcaacccttattgttttactcatccccacgatctcaataactttaaaat
tcccacagtctttgcatattaaaagctcaatccctttaaaatatccaata
tcttttaaaattcaaggtccttttaaaattcaaactctcttaactgtggg
ctccactaaaataccttcttatttcaagagggaaaaatatcagggcacag
tgacagtcaaaagcaaaatcaagctccaaccttccaatgtctgggatcca
gtcaccatcttctaggctcctctaagggcttgggtcacttctccagcttt
gtcctttgtagcacacagtttgtcatctaggctccagctgcctgtactct
actgctgctgctgttcttggtggtcatctcatggtactggcatgtccaaa
acactgccgtcttcttctgtaactaggcttcaccaacagcctctcatagg
ctctcttcatggtgccaagcctcaactccttttgcatgaactcttcagtc
ttgggccattaattgcatctatattagaacagtatgggaaaaccattctg
ttgtctaagaagtacaaaccaaaataaaaagaataataggtttaatatcg
taaaaattatttaaagtgtttgttaggataaagggaaaaagatacttctt
gcagtttgaaagaaagtctgggcatttgcatgaacaggagtagattacca
gcatatgcagtaagcaagaacaattgcaagattgtgtcagaagacttata
ctgctgtgagtgataatgagttggatacctaggttccatgaaaacactgg
agattaggcttaacattcaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_93662068_93663232
seq2: B6Ng01-280P20.g_69_1240

seq1  GAATTCCCTTTGTTAAGGGACAAAATGCTTGTGCCAGGGAACAGGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTGTTAAGGGACAAAATGCTTGTGCCAGGGAACAGGAAATG  50

seq1  AGCAGAGATTCTTCTTCACAGCATAGGAACTAAGGATGGTGTTCCAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATTCTTCTTCACAGCATAGGAACTAAGGATGGTGTTCCAAATG  100

seq1  ACTTTATTAATTGCCACTGCTATTATCGGGGCTCTTTAAATTATGCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTAATTGCCACTGCTATTATCGGGGCTCTTTAAATTATGCCTAC  150

seq1  AGAAATGTAGCTTTAGATATTTCAGCCTGAACAGGTTTTTTTTTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTAGCTTTAGATATTTCAGCCTGAACAGGTTTTTTTTTTTCTCT  200

seq1  AAAAACCAAAAGCTTCAACTTACAAACTATAAGTTAAGCTATAAGCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAGCTTCAACTTACAAACTATAAGTTAAGCTATAAGCTCCT  250

seq1  TTACCTCTGATAAGTCTAGCTTGTGTCAAGTTGACACACAAAACCAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTGATAAGTCTAGCTTGTGTCAAGTTGACACACAAAACCAGCCA  300

seq1  GTACAATTGACCCCCTTTCAACTTGACACACAAATACATCACTAATACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTGACCCCCTTTCAACTTGACACACAAATACATCACTAATACGT  350

seq1  CTCAACCCTTATTGTTTTACTCATCCCCACGATCTCAATAACTTTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCTTATTGTTTTACTCATCCCCACGATCTCAATAACTTTAAAAT  400

seq1  TCCCACAGTCTTTGCATATTAAAAGCTCAATCCCTTTAAAATATCCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGTCTTTGCATATTAAAAGCTCAATCCCTTTAAAATATCCAATA  450

seq1  TCTTTTAAAATTCAAGGTCCTTTTAAAATTCAAACTCTCTTAACTGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATTCAAGGTCCTTTTAAAATTCAAACTCTCTTAACTGTGGG  500

seq1  CTCCACTAAAATACCTTCTTATTTCAAGAGGGAAAAATATCAGGGCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTAAAATACCTTCTTATTTCAAGAGGGAAAAATATCAGGGCACAG  550

seq1  TGACAGTCAAAAGCAAAATCAAGCTCCAACCTTCCAATGTCTGGGATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCAAAAGCAAAATCAAGCTCCAACCTTCCAATGTCTGGGATCCA  600

seq1  GTCACCATCTTCTAGGCTCCTCTAAGGGCTTGGGTCACTTCTCCAGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATCTTCTAGGCTCCTCTAAGGGCTTGGGTCACTTCTCCAGCTTT  650

seq1  GTCCTTTGTAGCACACAGTTTGTCATCTAGGCTCCAGCTGCCTGTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGTAGCACACAGTTTGTCATCTAGGCTCCAGCTGCCTGTACTCT  700

seq1  ACTGCTGCTGCTGTTCTTGGTGGTCATCTCATGGTACTGGCATGTCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCTGCTGTTCTTGGTGGTCATCTCATGGTACTGGCATGTCCAAA  750

seq1  ACACTGCCGTCTTCTTCTGTAACTAGGCTTCACCAACAGCCTCTCATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCGTCTTCTTCTGTAACTAGGCTTCACCAACAGCCTCTCATAGG  800

seq1  CTCTCTTCATGGTGCCAAGCCTCAACTCC-TTTGCATGAACTCTTCAGTC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCTCTTCATGGTGCCAAGCCTCAACTCCTTTTGCATGAACTCTTCAGTC  850

seq1  TTGGGCCATTAATTGCATCTATATTAGAACAGTAT-GGAAAAACAATCTG  898
      ||||||||||||||||||||||||||||||||||| |||||| || ||||
seq2  TTGGGCCATTAATTGCATCTATATTAGAACAGTATGGGAAAACCATTCTG  900

seq1  TTGTCTAAGAAGTACAAAACAAAAATAAAAAGAATAATAGG-TTAATATC  947
      ||||||||||||||| |||| |||||||||||||||||||| ||||||||
seq2  TTGTCTAAGAAGTAC-AAACCAAAATAAAAAGAATAATAGGTTTAATATC  949

seq1  GTAAAAAT--ATTAAAGTGTTTGTTAGGATAAA-GGAAAAAGATACT--C  992
      ||||||||   |||||||||||||||||||||| |||||||||||||   
seq2  GTAAAAATTATTTAAAGTGTTTGTTAGGATAAAGGGAAAAAGATACTTCT  999

seq1  TGCAG-TTGAAAGAAAGTCTGGGCATTTGCATG-ACAGGAGTAGA-TACC  1039
      ||||| ||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TGCAGTTTGAAAGAAAGTCTGGGCATTTGCATGAACAGGAGTAGATTACC  1049

seq1  AGCATATGCAGTAAGC-AGAACAATTGCAAGATTGGTGTCAGAAGAC-TA  1087
      |||||||||||||||| ||||||||||||||||| |||||||||||| ||
seq2  AGCATATGCAGTAAGCAAGAACAATTGCAAGATT-GTGTCAGAAGACTTA  1098

seq1  TACTGCTGTTGAGTGAATAATGAGTT-GATAACTATGTTTCATGAGAAAG  1136
      |||||||| |||||| |||||||||| |||| ||| ||| ||||   || 
seq2  TACTGCTG-TGAGTG-ATAATGAGTTGGATACCTAGGTTCCATG---AAA  1143

seq1  AAACTGAGAATAAAGTTTAACATTCAACC  1165
      | ||||   || | | |||||||||||||
seq2  ACACTGGAGATTAGGCTTAACATTCAACC  1172