BAC Information

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BAC

Clone NameB6Ng01-281K20
Chromosome7 (Build37)
Map Location 3,540,611 - 3,644,784
singlet/doubletdoublet
Overlap geneOscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109
Downstream geneTsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281K20.bB6Ng01-281K20.g
ACCGA081094GA081095
length1,0711,077
definitionB6Ng01-281K20.b B6Ng01-281K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,643,715 - 3,644,784)(3,540,611 - 3,541,663)
sequence
gaattcggctatccccgaagtaagccgaagctgtggcactccatgccgag
ggcttgaatgaccgagtgtgcccgaaggaatccgaagctgaaagtctgtc
tctgagctccaggtccctcctcctcaagtctcaacgggactcgaagatct
tggccccgcctctctgacccgaaaccccgccccttcacgtactggcagct
ctttgcccggggacctcctagaaagatcgcgacaggcatcttgcggcaga
ctggtgttctgggtacctttcttgcggtgctgtaactcgtacagccgcgg
ctctcggggcctggaccgcgcagccctgccggcgccctccagaacgggca
gtgcgggggcgtgctgagctggggaggcgtggcgcgagccgaggcggcct
cgaaaaggagctccgcagtcttctggcccacggacggttcaggtgggccc
aggttgggttgcatggcggcgtcacgaagatcgtagggtggcggggtgcg
gggacagcgcccagagcgtggccgggctgggtggcgtaaccgcctgtgga
tctgccgaggcagaatcggatacacgctggccttcgctgcgcggggctgg
gctacgaaaggtgcttgcagatcgtacagggtcattgccttctctccgag
gtacgggttaaagaggagcccagagctcagagcttagaaaacaggatgct
aaatgctgggcttctccgagctgggcgggagtgggagtactgggtcctgt
aagacgcagaggaaattggggacccagaagggctccaatgtactcaggag
ggtgaggatgatacagattcctgggctctcagagaagaggggtgttgtga
aaggattgtttttctggccggaaggtgtgggtcataaatggaagtagaag
tacttttgattttcaacattggcaaagggtgggggtgggggctaattctt
gggtcctggaaagaggagtgagctggaagctgggttctcaaaggggattc
tactgtctcaaaagaggaatggaactggaatactggttctcactgtgagt
ccttcctcctcctagaccatg
gaattcaaatcccagcaaccacatggtggctcacaaccatctgtaatgag
atctgatgccctcttctggagtgtctgaagacagctacagtgtacttaca
tattgtactggctagttttgtgtcaacttgacacagctggagttatcaca
gggaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaag
gcattttctcaattagtgatcaagggggaaaggccccttgtgggtgggac
catctctgggctggtagtcttgggttctataagagagcaggctgagcaag
ccagaggaagcaagccagtaaagaacatccctccatggcctctgcatcag
ctcctgcttcctgacctgtttgagttccagtcctgacttccttggtaata
aacagcagtatggaattgtaagctgaataaaccctttcctccccaacttg
cttcttggtcatgatgtttgtgcaggaatagaaaccctgattaagacaca
tattataataaatctttgggccagagtgagctgggggaaaaatttatttt
gctaacaatgatgaatatatatttttatttattatatttacttatttata
ggaggaagtaaatattccacagagtacatacggaggtcaagacaaccttg
gggaattagttctctcctttttccttttttttttttctttcagacaggat
ttctctgtgtggtgctggctgtcctaaaaactcactctgtagaccagact
ggcctcaaactcagaaatccctttcctttttccttatgaatacaagctat
caggcttgacagcgagcaccccaacctggcctggaaatgtacatctaaaa
caacagcaatttccttactcactagaaagttctgttaatgtcaaattttc
agtggtggggaacagaggaggaaacaaccaggattagcctggtttaaagt
gaagaatgagcttggataatcctggcagtacagtttccattacagcccag
gttacacaaagaaaacattggtctcgataaaagttaaaaataattcaaca
aaataagtagaagacagatcccgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3643715_3644784
seq2: B6Ng01-281K20.b_49_1119 (reverse)

seq1  CATGGTCT-GGGGGAGGAAGGACTCACAGTGAGAACCAGTATTCCAG-TC  48
      |||||||| || ||||||||||||||||||||||||||||||||||| ||
seq2  CATGGTCTAGGAGGAGGAAGGACTCACAGTGAGAACCAGTATTCCAGTTC  50

seq1  CCTTCCTCTTTTGAAGACAGTAGAATCCCCTTTGAGAACCCAGGCCTCCA  98
      | ||||||||||| |||||||||||||||||||||||||||| || ||||
seq2  CATTCCTCTTTTG-AGACAGTAGAATCCCCTTTGAGAACCCA-GCTTCCA  98

seq1  GCTCACTCCTCCTTCCAGGACCCAAGAATTAAGCCCCCACCCCACCCCTT  148
      ||||||||||| |||||||||||||||||| ||||||||||||  |||||
seq2  GCTCACTCCTCTTTCCAGGACCCAAGAATT-AGCCCCCACCCCCACCCTT  147

seq1  TGCCAATGTTG-AAATCAAAAGTACTTCTACTTCCATTTATGACCCACAC  197
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATGTTGAAAATCAAAAGTACTTCTACTTCCATTTATGACCCACAC  197

seq1  CTTCCGGCCAGAAAAACAATCC-TTCACAACACCCCTCTTCTCTGAGAGC  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCCGGCCAGAAAAACAATCCTTTCACAACACCCCTCTTCTCTGAGAGC  247

seq1  CCAGGAATCTGTATCATCCTCACCCTCCTGAGTACATTGGAGCCCTTCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATCTGTATCATCCTCACCCTCCTGAGTACATTGGAGCCCTTCTG  297

seq1  GGTCCCCAATTTCCTCTGCGTCTTACAGGACCCAGTACTCCCACTCCCGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAATTTCCTCTGCGTCTTACAGGACCCAGTACTCCCACTCCCGC  347

seq1  CCAGCTCGGAGAAGCCCAGCATTTAGCATCCTGTTTTCTAAGCTCTGAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCGGAGAAGCCCAGCATTTAGCATCCTGTTTTCTAAGCTCTGAGC  397

seq1  TCTGGGCTCCTCTTTAACCCGTACCTCGGAGAGAAGGCAATGACCCTGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTCCTCTTTAACCCGTACCTCGGAGAGAAGGCAATGACCCTGTA  447

seq1  CGATCTGCAAGCACCTTTCGTAGCCCAGCCCCGCGCAGCGAAGGCCAGCG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTGCAAGCACCTTTCGTAGCCCAGCCCCGCGCAGCGAAGGCCAGCG  497

seq1  TGTATCCGATTCTGCCTCGGCAGATCCACAGGCGGTTACGCCACCCAGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCGATTCTGCCTCGGCAGATCCACAGGCGGTTACGCCACCCAGCC  547

seq1  CGGCCACGCTCTGGGCGCTGTCCCCGCACCCCGCCACCCTACGATCTTCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACGCTCTGGGCGCTGTCCCCGCACCCCGCCACCCTACGATCTTCG  597

seq1  TGACGCCGCCATGCAACCCAACCTGGGCCCACCTGAACCGTCCGTGGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCCGCCATGCAACCCAACCTGGGCCCACCTGAACCGTCCGTGGGCC  647

seq1  AGAAGACTGCGGAGCTCCTTTTCGAGGCCGCCTCGGCTCGCGCCACGCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGCGGAGCTCCTTTTCGAGGCCGCCTCGGCTCGCGCCACGCCT  697

seq1  CCCCAGCTCAGCACGCCCCCGCACTGCCCGTTCTGGAGGGCGCCGGCAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTCAGCACGCCCCCGCACTGCCCGTTCTGGAGGGCGCCGGCAGG  747

seq1  GCTGCGCGGTCCAGGCCCCGAGAGCCGCGGCTGTACGAGTTACAGCACCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCGGTCCAGGCCCCGAGAGCCGCGGCTGTACGAGTTACAGCACCG  797

seq1  CAAGAAAGGTACCCAGAACACCAGTCTGCCGCAAGATGCCTGTCGCGATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGGTACCCAGAACACCAGTCTGCCGCAAGATGCCTGTCGCGATC  847

seq1  TTTCTAGGAGGTCCCCGGGCAAAGAGCTGCCAGTACGTGAAGGGGCGGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGAGGTCCCCGGGCAAAGAGCTGCCAGTACGTGAAGGGGCGGGG  897

seq1  TTTCGGGTCAGAGAGGCGGGGCCAAGATCTTCGAGTCCCGTTGAGACTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGGTCAGAGAGGCGGGGCCAAGATCTTCGAGTCCCGTTGAGACTTG  947

seq1  AGGAGGAGGGACCTGGAGCTCAGAGACAGACTTTCAGCTTCGGATTCCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGGACCTGGAGCTCAGAGACAGACTTTCAGCTTCGGATTCCTT  997

seq1  CGGGCACACTCGGTCATTCAAGCCCTCGGCATGGAGTGCCACAGCTTCGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACACTCGGTCATTCAAGCCCTCGGCATGGAGTGCCACAGCTTCGG  1047

seq1  CTTACTTCGGGGATAGCCGAATTC  1070
      ||||||||||||||||||||||||
seq2  CTTACTTCGGGGATAGCCGAATTC  1071

seq1: chr7_3540611_3541663
seq2: B6Ng01-281K20.g_84_1142

seq1  CCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTG  50

seq1  GAGTGTCTGAAGACAGCTACAGTGTACTTACATATTGTACTGGCTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGAAGACAGCTACAGTGTACTTACATATTGTACTGGCTAGTTT  100

seq1  TGTGTCAACTTGACACAGCTGGAGTTATCACAGGGAAAGGAGCTTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAACTTGACACAGCTGGAGTTATCACAGGGAAAGGAGCTTCAGTT  150

seq1  GAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTG  200

seq1  ATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGT  250

seq1  CTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGAGGAAGCAAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGAGGAAGCAAGCCAG  300

seq1  TAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTG  350

seq1  TTTGAGTTCCAGTCCTGACTTCCTTGGTAATAAACAGCAGTATGGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCCAGTCCTGACTTCCTTGGTAATAAACAGCAGTATGGAATTG  400

seq1  TAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTT  450

seq1  TGTGCAGGAATAGAAACCCTGATTAAGACACATATTATAATAAATCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGAATAGAAACCCTGATTAAGACACATATTATAATAAATCTTTG  500

seq1  GGCCAGAGTGAGCTGGGGGAAAAATTTATTTTGCTAACAATGATGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGTGAGCTGGGGGAAAAATTTATTTTGCTAACAATGATGAATAT  550

seq1  ATATTTTTATTTATTATATTTACTTATTTATAGGAGGAAGTAAATATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATTTATTATATTTACTTATTTATAGGAGGAAGTAAATATTCC  600

seq1  ACAGAGTACATACGGAGGTCAAGACAACCTTGGGGAATTAGTTCTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTACATACGGAGGTCAAGACAACCTTGGGGAATTAGTTCTCTCCT  650

seq1  TTTTCCTTTTTTTTTTTTCTTTCAGACAGGATTTCTCTGTGTGGTGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTTTTTTTTTCTTTCAGACAGGATTTCTCTGTGTGGTGCTGG  700

seq1  CTGTCCT-AAAACTCACTCTGTAGACCAGACTGGCCTCAAACTCAGAAAT  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAAAAACTCACTCTGTAGACCAGACTGGCCTCAAACTCAGAAAT  750

seq1  CCCTTTCCTTTTTCCTTATGAATACAAGCTATCAGGCTTGACAGCGAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTTTTTCCTTATGAATACAAGCTATCAGGCTTGACAGCGAGCA  800

seq1  CCCCAACCTGGCCTGGAAATGTACATCTAAAACAACAGCAA-TTCCTTAC  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCAACCTGGCCTGGAAATGTACATCTAAAACAACAGCAATTTCCTTAC  850

seq1  TCAACTAGAAAGTTCTGTTAATGTCAAA-TTTCAGTGGT-GGGAACAGAG  896
      || ||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TC-ACTAGAAAGTTCTGTTAATGTCAAATTTTCAGTGGTGGGGAACAGAG  899

seq1  GAGGAAACAACCAGGATTTAGCCT-GTTTAAAGTGGAAGATGAGGCTGGA  945
      |||||||||||||||| ||||||| |||||||||| |  |||||  ||||
seq2  GAGGAAACAACCAGGA-TTAGCCTGGTTTAAAGTGAAGAATGAGCTTGGA  948

seq1  TAATCCTGGCAGTACAG-TTCCAGTACAGCCAGGGTTACACAAAG-AAAC  993
      ||||||||||||||||| ||||| |||||||  |||||||||||| ||||
seq2  TAATCCTGGCAGTACAGTTTCCATTACAGCCCAGGTTACACAAAGAAAAC  998

seq1  ATT-GTCTCGAAAAAAG-TAAAAATAATCAAACAAAAATAAAGTAGAAGA  1041
      ||| ||||||| ||||| ||||||||||  |||||||   ||||||||||
seq2  ATTGGTCTCGATAAAAGTTAAAAATAATTCAACAAAA--TAAGTAGAAGA  1046

seq1  CAGATCCC-TCTC  1053
      |||||||| ||||
seq2  CAGATCCCGTCTC  1059