BAC Information

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BAC

Clone NameB6Ng01-281P01
Chromosome7 (Build37)
Map Location 20,349,839 - 20,516,371
singlet/doubletdoublet
Overlap geneBcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr
Upstream geneSycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
Downstream gene2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P01.bB6Ng01-281P01.g
ACCGA081288GA081289
length446819
definitionB6Ng01-281P01.b B6Ng01-281P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,349,839 - 20,350,290)(20,515,560 - 20,516,371)
sequence
cccaataaggagttaggggcgtggctgagtgggagagcacttgggtagca
tgcaacaggccctgggttctatcctcctcaccactgaagatacacaagag
gctaaggtcagtattgacagtttaggtggtatccaaagggaacacagagt
gagttacctgctggcggaaaaaagaatactctgggctggggctgccatcg
ccctggcagagcagctggacagcatcaccctcacggacccagccctccgt
ggtggacgggctccccacccagaattctacatgttccgtgggatctgtag
gaggagaggaagtaaggtcatggcgtgtgtccaggctgcgctgaggagga
aaggtcagttctacttttaaaggaagagatgaagcagctaaagcttagaa
gcctctcttttttttttttttttggtttttcgagacagggtttctc
gaattcacagaaatccacctgcctctgcctcctgagttctgggatcaaag
tcatacaccactccttaattttgaaacaaggcctctcacttgaactcagt
agcccagctagaccctacagccatcttgctccagggatctaggtgtgttc
tgtgtgctgggactccaaactccagtccctgtgccatcttgctagcatta
ggaaatatgtttaatagatttaaacatgagcattaagaaagagagcggca
cattcctgaatgactggctcccctgcccttttagacaaaggctgctgctt
tcagccttctccaagggagagcctggctggctaaccgagggagcctgagt
cagtcacatttggctgctggcagcaagctctctatccctccacagtgagg
aagctggcagcgagcaggtagacctggagactacacggctgctgattggt
cttctatctcctgaagtttactcatgttcttaaaattcctggtgattttg
ttcttttgccaacgtagaaagcacagtggacgggttgtgtttgtcccagc
cctctctgtaggctgagcagtgcagcggtgcccacaggtttacacacaag
tttggaggctacctgtgtttggttctgttctgttctgcactttggagtcc
cctgggtattccacattacaagttgatgttataggtgggggctggaattt
gttgccctgggtgtggggaccaaggtacaatctaaccatgggcccccaca
aggctttcctgaaatcaaccttatatgttaggtgttgagagtagcctgca
gttctcggggataacttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20349839_20350290
seq2: B6Ng01-281P01.b_49_500

seq1  GAATTCCCCAATAAGGAGTTAGGGGCGTGGCTGAGTGGGAGAGCACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAATAAGGAGTTAGGGGCGTGGCTGAGTGGGAGAGCACTTGG  50

seq1  GTAGCATGCAACAGGCCCTGGGTTCTATCCTCCTCACCACTGAAGATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGCAACAGGCCCTGGGTTCTATCCTCCTCACCACTGAAGATACA  100

seq1  CAAGAGGCTAAGGTCAGTATTGACAGTTTAGGTGGTATCCAAAGGGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGCTAAGGTCAGTATTGACAGTTTAGGTGGTATCCAAAGGGAACA  150

seq1  CAGAGTGAGTTACCTGCTGGCGGAAAAAAGAATACTCTGGGCTGGGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGTTACCTGCTGGCGGAAAAAAGAATACTCTGGGCTGGGGCTG  200

seq1  CCATCGCCCTGGCAGAGCAGCTGGACAGCATCACCCTCACGGACCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGCCCTGGCAGAGCAGCTGGACAGCATCACCCTCACGGACCCAGCC  250

seq1  CTCCGTGGTGGACGGGCTCCCCACCCAGAATTCTACATGTTCCGTGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGGTGGACGGGCTCCCCACCCAGAATTCTACATGTTCCGTGGGAT  300

seq1  CTGTAGGAGGAGAGGAAGTAAGGTCATGGCGTGTGTCCAGGCTGCGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAGGAGAGGAAGTAAGGTCATGGCGTGTGTCCAGGCTGCGCTGA  350

seq1  GGAGGAAAGGTCAGTTCTACTTTTAAAGGAAGAGATGAAGCAGCTAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGGTCAGTTCTACTTTTAAAGGAAGAGATGAAGCAGCTAAAGC  400

seq1  TTAGAAGCCTCTCTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCCTCTCTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTC  450

seq1  TC  452
      ||
seq2  TC  452

seq1: chr7_20515560_20516371
seq2: B6Ng01-281P01.g_67_885 (reverse)

seq1  ACAAGTTAT-CCCGAG-ACTGCA-GCTACTCTCAACACCTAACATATAA-  46
      ||||||||| |||||| |||||| ||||||||||||||||||||||||| 
seq2  ACAAGTTATCCCCGAGAACTGCAGGCTACTCTCAACACCTAACATATAAG  50

seq1  GTTGATTTCAGG-AAGCCTTGTGGGGGCCCATGGTTAGATTGTACCTTGG  95
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTCAGGAAAGCCTTGTGGGGGCCCATGGTTAGATTGTACCTTGG  100

seq1  TCCCCACACCCAGGGCAAC-AATTCCAGCCCCCACCTATAACATCAACTT  144
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCCACACCCAGGGCAACAAATTCCAGCCCCCACCTATAACATCAACTT  150

seq1  GTAATGTGGAATACCCA-GGGACTCCAAAGTGCAGAACAGAACAGAACCA  193
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAATGTGGAATACCCAGGGGACTCCAAAGTGCAGAACAGAACAGAACCA  200

seq1  AACACAGGTAGCCTCCAAACTTGTGTGTAAACCTGTGGGCACCGCTGCAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGTAGCCTCCAAACTTGTGTGTAAACCTGTGGGCACCGCTGCAC  250

seq1  TGCTCAGCCTACAGAGAGGGCTGGGACAAACACAACCCGTCCACTGTGCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTACAGAGAGGGCTGGGACAAACACAACCCGTCCACTGTGCT  300

seq1  TTCTACGTTGGCAAAAGAACAAAATCACCAGGAATTTTAAGAACATGAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGTTGGCAAAAGAACAAAATCACCAGGAATTTTAAGAACATGAGT  350

seq1  AAACTTCAGGAGATAGAAGACCAATCAGCAGCCGTGTAGTCTCCAGGTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGGAGATAGAAGACCAATCAGCAGCCGTGTAGTCTCCAGGTCT  400

seq1  ACCTGCTCGCTGCCAGCTTCCTCACTGTGGAGGGATAGAGAGCTTGCTGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCGCTGCCAGCTTCCTCACTGTGGAGGGATAGAGAGCTTGCTGC  450

seq1  CAGCAGCCAAATGTGACTGACTCAGGCTCCCTCGGTTAGCCAGCCAGGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCAAATGTGACTGACTCAGGCTCCCTCGGTTAGCCAGCCAGGCT  500

seq1  CTCCCTTGGAGAAGGCTGAAAGCAGCAGCCTTTGTCTAAAAGGGCAGGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGGAGAAGGCTGAAAGCAGCAGCCTTTGTCTAAAAGGGCAGGGG  550

seq1  AGCCAGTCATTCAGGAATGTGCCGCTCTCTTTCTTAATGCTCATGTTTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCATTCAGGAATGTGCCGCTCTCTTTCTTAATGCTCATGTTTAA  600

seq1  ATCTATTAAACATATTTCCTAATGCTAGCAAGATGGCACAGGGACTGGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAAACATATTTCCTAATGCTAGCAAGATGGCACAGGGACTGGAG  650

seq1  TTTGGAGTCCCAGCACACAGAACACACCTAGATCCCTGGAGCAAGATGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTCCCAGCACACAGAACACACCTAGATCCCTGGAGCAAGATGGC  700

seq1  TGTAGGGTCTAGCTGGGCTACTGAGTTCAAGTGAGAGGCCTTGTTTCAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTCTAGCTGGGCTACTGAGTTCAAGTGAGAGGCCTTGTTTCAAA  750

seq1  ATTAAGGAGTGGTGTATGACTTTGATCCCAGAACTCAGGAGGCAGAGGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAGTGGTGTATGACTTTGATCCCAGAACTCAGGAGGCAGAGGCA  800

seq1  GGTGGATTTCTGTGAATTC  812
      |||||||||||||||||||
seq2  GGTGGATTTCTGTGAATTC  819