BAC Information

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BAC

Clone NameB6Ng01-283A20
Chromosome7 (Build37)
Map Location 5,757,654 - 5,758,304
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1
Downstream geneLOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283A20.bB6Ng01-283A20.g
ACCGA082109GA082110
length1,138653
definitionB6Ng01-283A20.b B6Ng01-283A20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagggctaaagagaaaacctgtctctgtgggatttcctaacta
ttcttatggaaaaccgtatctggataagactgtcctttctgtcctagtaa
acaactaacagaaaagccctgagcattagactttgactttataatgctaa
ttagtactgaataggtaacttcctagttgaattttaagtaggtcgttgga
accctggtgagggttgactgtacaaatttgaaatgcactttattaagaat
aacactgagttgatattcctccacattattggatgacaggcaggaaacag
ggaggagggggtaacgactggctccgtaataaaagtccaattggtttttt
tagggtgggaggctgtgaagggcttgcccttccaacagtacggtctccaa
cctccccccccttttaattaagttcaataaggccacgcttaactgaggtg
atcaaatgattttctcatccatagatgagtgggcttttaaccttggcttg
ggtggaaattgacccaattcctcctgtgggtgctgtcatgacccaaacct
gtggctcttgttatcttttggggaggggaggcagagccttagatattttt
ggttgtagctggaaatagataccaacctccatccaaactgggtatatcac
acagggaactcagaaaatggtcaagctggaccattcctgcagtaattctc
tgcaccaagcgatacccatactgtattcatatgatcacgaaacagtatgc
acaattctgagtattgtgcagctcctaaaggagaattgtcaacctcagat
ttagcaaggcctagacaagaattatgtcattaataacaccatgatttgtg
gctgaaataggagctggaagtcatcctcttcatctctgttaatcccacag
cctgaggaactaaggggaccttgcagtaacagcaaggatgaaaagccaga
ggtcagctaagggactaagcccgtctatcaaataaaaaccaatttctttt
aaattggaaataatttggctttttctagccctctgggtaacctaatttca
actccagagtgaagtcaatgtgcttggaatgtactggcaatgaagatagc
aagtgtcacccggtgtgctctggggggcgtgggaatgc
gaattctccatggaagtttattattatattagactgtaccagattttaga
gaaatttacttggaaaaaaacaaattccgtaattacactcaagaaaatgg
attgaggaatcagttaataatataggcaatcacccattttcatggctgcc
atattcactatagccatgatatagaaacagtttaaatatacatcagataa
tgaatggaaaatgatcatgaagtacatttacaccatgggatactatttat
ctgctaagcaaaataatattaagaactttgtagataaatggatcattgag
aagcaaactttctttatatggtaacccacaaattaagacaaatattgctt
attttccttagtttgtagacattaactttgaatcttgagttatatgtctt
taatttggaatacttctataaaagtaaaaaacataggattaagggtcttg
tgatagaacaaagtcatttaaggactaaaggaactaatggaaagtgatta
attaaattatgttgaggggatgaggagagaatatggggagatttaatata
ctaagcccctattcataccttcatggaaatatatcattgaagatatttta
aaaaactatattttcctctttttactgtttataaaatattttttaatgga
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5757654_5758304
seq2: B6Ng01-283A20.g_63_715

seq1  GAATTCTCCATGGAAGTTTATTATTATATTAGACTGTACCAGATTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGGAAGTTTATTATTATATTAGACTGTACCAGATTTTAGA  50

seq1  GAAATTTACTTGGAAAAAAACAAATTCCGTAATTACACTCAAGAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTACTTGGAAAAAAACAAATTCCGTAATTACACTCAAGAAAATGG  100

seq1  ATTGAGGAATCAGTTAATAATATAGGCAATCACCCATTTTCATGGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAATCAGTTAATAATATAGGCAATCACCCATTTTCATGGCTGCC  150

seq1  ATATTCACTATAGCCATGATATAGAAACAGTTTAAATATACATCAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACTATAGCCATGATATAGAAACAGTTTAAATATACATCAGATAA  200

seq1  TGAATGGAAAATGATCATGAAGTACATTTACACCATGGGATACTATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGAAAATGATCATGAAGTACATTTACACCATGGGATACTATTTAT  250

seq1  CTGCTAAGCAAAATAATATTAAGAACTTTGTAGATAAATGGATCATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGCAAAATAATATTAAGAACTTTGTAGATAAATGGATCATTGAG  300

seq1  AAGCAAACTTTCTTTATATGGTAACCCACAAATTAAGACAAATATTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACTTTCTTTATATGGTAACCCACAAATTAAGACAAATATTGCTT  350

seq1  ATTTTCCTTAGTTTGTAGACATTAACTTTGAATCTTGAGTTATATGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTAGTTTGTAGACATTAACTTTGAATCTTGAGTTATATGTCTT  400

seq1  TAATTTGGAATACTTCTATAAAAGTAAAAAACATAGGATTAAGGGTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGAATACTTCTATAAAAGTAAAAAACATAGGATTAAGGGTCTTG  450

seq1  TGATAGAACAAAGTCATTTAAGGACTAAAGGAACTAATGGAAAGTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAACAAAGTCATTTAAGGACTAAAGGAACTAATGGAAAGTGATTA  500

seq1  ATTAAATTATGTTGAGGGGATGAGGAGAGAATATGGGGAGATTTAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTAAATTATGTTGAGGGGATGAGGAGAGAATATGGGGAGATTTAAT-AT  549

seq1  ACTAAGCACCAATTAAATAGGCTTCATGGAAATATATCAATGAAGAAATT  600
      ||||||| || |||  |||  |||||||||||||||||| |||||| |||
seq2  ACTAAGCCCCTATT-CATA-CCTTCATGGAAATATATCATTGAAGATATT  597

seq1  T--AGAAACTATATTTTCTTCTTTTTACTGTTTAT-AAATA-TTTTTAAT  646
      |  | ||||||||||||| |||||||||||||||| ||||| ||||||||
seq2  TTAAAAAACTATATTTTCCTCTTTTTACTGTTTATAAAATATTTTTTAAT  647

seq1  GAAAA-  651
      | ||| 
seq2  GGAAAA  653