BAC Information

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BAC

Clone NameB6Ng01-284A20
Chromosome7 (Build37)
Map Location 12,849,654 - 12,850,774
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9
Downstream geneV1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284A20.bB6Ng01-284A20.g
ACCGA082851GA082852
length1,107848
definitionB6Ng01-284A20.b B6Ng01-284A20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctataaatcatggaggaatgggaatttatgtcatgttcttcaagg
aaaactctagggatacaaatttctttccttaaataattccatatacaaaa
tgtcaataccatcactgtatcaccagaaataatgattccaaataccattc
ttctgcaatttgacatgctgataaacacttatgcaaaaagagtagaactg
ccactccatggcaaagtgtttatctttcattcattcgattctggagtttt
atcccaagtacttctaatataataaaattcctataaaagagaaataagac
tagattgaccacggcaattttaagaattaaacatgagttcataacattgc
attgattgtaagaactgtcattattaaatagaaaaatttactatgaaacc
agaatcttttttaaaatttggtatgtttttaaaattttaattattatacg
tagtatttgatttcattatgacattttaaaaaaatttattggtgagcttc
ttctttcattttttccttcactctcaagacagcatattgcctttctccat
atctttcataatccttttcagtttattgacacattattctattacctccc
tttgattcctcaacacctctgtttccttatctttgctttcttctggtttt
gtaccccaaaccactatctatctatgtatctatgtatctctctctctctc
taacactgcgatctatgtctttgtttgagaaagaacatgttttcccctga
gtctgtgtcaccttgctgagttctttgctagtctatttattttctaaaaa
ctgtatgattttattttctttcatagatgaataaaattccactgtataag
gattgaacttttctattattttcttatgtacatttcgtatgaacatcatt
tccttgctattgtgaataatgcaacattttacacggatacatctccgtgt
tagggtacggaatcttttagtatgtggacaaatatatagctgtattatat
tgtactcaattttaatgattgatactctgtgtctcatttccatatgcatg
tagtattttacatctacagtataaatgagatttgacccatcattgtcaac
atttgta
gaattctgaactaaggaatctcgaagggccaaaaaaaaaaaaaaacacct
aaagaaatgttcaatatccttagtcatgagagaaatgcaaatcaaagtga
ccctgaaatgacaccttacaccaatcagaatggttaagataaaaaactca
agtgataatacatgcttgagaggatgtggagaaatagaaacactcttcat
tgctggagggttggcaggctggtataaccaacttggaaatcaatctggca
gttcttcagaaaattggaaatagttctacatgaagacgcaactataccac
tactggacatttatccaaaagaaactccaacatataacaaggacacatgc
tcagtgtgttcatagcagacttatttataatagccagaaacttggaaaca
acccagatatccttcaatggaacaatggacaaagaaaatgtggtgcattt
atacaatggaatactactgagctattaaaaacaatgacttcatgaaattt
gcaggcaaaatggatggaacttgaaaatatcatcctgattgaattaagcc
agacccaaaaggacatacatggtatgcaatatccactgatcagtgaatat
tagccccaaagctcagaatacccacaataaaactctcagacaatatgaag
cttaacaagaaggaatgccaaagtacagatacttcaatcccacttagaag
gggaaaacaaacaatcttgggaggcagtgggagggaaggatctgggtggg
agagtggaaccaggggagttgcaggatccatatgggaaagaaacaggaga
gaattccaaagggtcaggggattgtatagaaacatatagctgtgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12849654_12850774
seq2: B6Ng01-284A20.b_47_1153 (reverse)

seq1  TACAAATGTTGACAATGATGTGTCAAAATTCTCATTTTATACTGGTAGGA  50
      |||||||||||||||||||| ||||||  ||||| |||||||| ||| ||
seq2  TACAAATGTTGACAATGATGGGTCAAA--TCTCA-TTTATACT-GTA-GA  45

seq1  TGGTAAAATACTACATGCATTATGGAAATGAAGACACAGAGTTATCAAAT  100
      | ||||||||||||||||| |||||||||| |||||||||| |||| |||
seq2  T-GTAAAATACTACATGCA-TATGGAAATG-AGACACAGAG-TATC-AAT  90

seq1  CATTAAAATTGAGTTACAATATAATACAGCTATATAATTTTGTCCACATA  150
      ||||||||||||| ||||||||||||||||||||||  ||||||||||||
seq2  CATTAAAATTGAG-TACAATATAATACAGCTATATA--TTTGTCCACATA  137

seq1  CCTAAAAGATTCCGTACCCTAACACGGAGATGTATCCGTGTAAAATGTTG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTAAAAGATTCCGTACCCTAACACGGAGATGTATCCGTGTAAAATGTTG  186

seq1  CATTATTCACAATAGCAAGGAAATGATGTTCATACGAAATGTACATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCACAATAGCAAGGAAATGATGTTCATACGAAATGTACATAAGA  236

seq1  AAATAATAGAAAAGTTCAATCCTTATACAGTGGAATTTTATTCATCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAGAAAAGTTCAATCCTTATACAGTGGAATTTTATTCATCTATG  286

seq1  AAAGAAAATAAAATCATACAGTTTTTAGAAAATAAATAGACTAGCAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATAAAATCATACAGTTTTTAGAAAATAAATAGACTAGCAAAGA  336

seq1  ACTCAGCAAGGTGACACAGACTCAGGGGAAAACATGTTCTTTCTCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAGGTGACACAGACTCAGGGGAAAACATGTTCTTTCTCAAACA  386

seq1  AAGACATAGATCGCAGTGTTAGAGAGAGAGAGAGATACATAGATACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAGATCGCAGTGTTAGAGAGAGAGAGAGATACATAGATACATAG  436

seq1  ATAGATAGTGGTTTGGGGTACAAAACCAGAAGAAAGCAAAGATAAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGTGGTTTGGGGTACAAAACCAGAAGAAAGCAAAGATAAGGAAA  486

seq1  CAGAGGTGTTGAGGAATCAAAGGGAGGTAATAGAATAATGTGTCAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGTTGAGGAATCAAAGGGAGGTAATAGAATAATGTGTCAATAAA  536

seq1  CTGAAAAGGATTATGAAAGATATGGAGAAAGGCAATATGCTGTCTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGGATTATGAAAGATATGGAGAAAGGCAATATGCTGTCTTGAGA  586

seq1  GTGAAGGAAAAAATGAAAGAAGAAGCTCACCAATAAATTTTTTTAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAAAAAATGAAAGAAGAAGCTCACCAATAAATTTTTTTAAAATG  636

seq1  TCATAATGAAATCAAATACTACGTATAATAATTAAAATTTTAAAAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGAAATCAAATACTACGTATAATAATTAAAATTTTAAAAACATA  686

seq1  CCAAATTTTAAAAAAGATTCTGGTTTCATAGTAAATTTTTCTATTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTTAAAAAAGATTCTGGTTTCATAGTAAATTTTTCTATTTAATA  736

seq1  ATGACAGTTCTTACAATCAATGCAATGTTATGAACTCATGTTTAATTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTCTTACAATCAATGCAATGTTATGAACTCATGTTTAATTCTT  786

seq1  AAAATTGCCGTGGTCAATCTAGTCTTATTTCTCTTTTATAGGAATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCCGTGGTCAATCTAGTCTTATTTCTCTTTTATAGGAATTTTAT  836

seq1  TATATTAGAAGTACTTGGGATAAAACTCCAGAATCGAATGAATGAAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGAAGTACTTGGGATAAAACTCCAGAATCGAATGAATGAAAGAT  886

seq1  AAACACTTTGCCATGGAGTGGCAGTTCTACTCTTTTTGCATAAGTGTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTTGCCATGGAGTGGCAGTTCTACTCTTTTTGCATAAGTGTTTA  936

seq1  TCAGCATGTCAAATTGCAGAAGAATGGTATTTGGAATCATTATTTCTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTCAAATTGCAGAAGAATGGTATTTGGAATCATTATTTCTGGT  986

seq1  GATACAGTGATGGTATTGACATTTTGTATATGGAATTATTTAAGGAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTGATGGTATTGACATTTTGTATATGGAATTATTTAAGGAAAGA  1036

seq1  AATTTGTATCCCTAGAGTTTTCCTTGAAGAACATGACATAAATTCCCATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATCCCTAGAGTTTTCCTTGAAGAACATGACATAAATTCCCATT  1086

seq1  CCTCCATGATTTATAGAATTC  1121
      |||||||||||||||||||||
seq2  CCTCCATGATTTATAGAATTC  1107