BAC Information

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BAC

Clone NameB6Ng01-284C17
Chromosome7 (Build37)7 (Build37)
Map Location 46,535,920 - 46,537,05346,567,771 - 46,568,581
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531
Downstream geneEG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284C17.bB6Ng01-284C17.g
ACCGA082940GA082941
length1,114817
definitionB6Ng01-284C17.b B6Ng01-284C17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,535,920 - 46,537,053)(46,567,771 - 46,568,581)
sequence
gaattcctcctcaaaggacttgactttcctggaaaccccctttcctctag
ttctggagtgtctcatttccctaagaactccagctcccttcccctttaag
ctggtcatgactgattaaataacccctatcatccatatctcaagcttcct
tccaacaaggcttagaaaaatcttgcattacaaatgattttgaatcctca
gtagaggatccttaaagaagcaggacaagatgtcagtgtttgacctggct
gcagtgtgggacactgtcacaattagcatgtgagtgtttcttttacatct
tgtcagttgggtatagcaaacacttggcagaagagacttgagagcctcag
taggtagagagatgaatcatcaaaaatagtggctctctggaatggaatat
gagggccctgatctaagagcagaactgtgagccacactaccacatctctt
agcaggaactgggaatagagcaggctgggccctttgtgtgatcattcctg
aagcagcatactggaatggagccaacaagactgtaaagccatatgcagca
caaggatatgatcttgcaacttttttacttgccagaagccaatgcagaag
aaaaaatccaaagccctctctgccagaagagagacatgcggctctttgac
attaaagcagagcaacagaggtatggccatctttcccaaaggtattgcca
tcccccattgcgtagtcttcctgatcagaatgtggactggggagtccagg
actcactgcacatccatggctacttaatctcaggggctctgccttctgcc
acaaaagagcagcctctccctaccaattgccttgtatctggtcttggcct
ctaaaaggcagacattggtaggactaaagactctaatcatttagcatctg
tcctagcctttaaaatacgtgaatctgttgcccatagcacaggctatttt
ctataggtttctagaaagaggaatatatcctccccattctaatctcgaaa
ctatatatatatatatattctatttacattccaaatgtgcctcacttagc
agtgtcccatctcaccccatttccccttccgttgctatgagggtacttac
cagctactactcac

gaattcctaattgatctcattcaacttttgctccaatctaggcacagtcc
ttctttgtcctggtttgtcttgctcccataactatgatactatctcgtta
ctctgtcccagagcagaaatgtttagagggaagagagccatagacagctt
aggcctcttgctttgcactgtcctatgcagatctcactctctgtagagag
acagagtctctctaatatatacagatggacctgggtctgcctatggagtg
ctgctctcttaagtgagtgccagctccaccaggattgtctatattctatg
attaaaaattaatggcggggcagtggtgtcacatgcctttaagcccaggg
cttgggggtcaaaggcaggaggatttctgagttcgaggtcagcctggtct
ccagagtgagttccaatacagcccaggctacacaaaaaaaccctgtcttg
aaaaaacaaaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaagagagagagagagagagagagagagagagagagagagagaa
agaaagaaagaaagaaagaaagaaagaaagagagaaagaaagaaagaaag
aaagaaaggaagaaaggaagaaagaaagaaagtttgcaaccccattggaa
gtacaatgtcaaacaaccagagcttccaggttctaaaccaccaaacaagg
agtacacatggagggatccatggctccaactgcatatttagcagaggatg
gccttgtcaggcatcaatgggagaagaggcccttggtcccatgaaatctt
tagtgccccagtaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_46535920_46537053
seq2: B6Ng01-284C17.b_48_1161 (reverse)

seq1  GTGAGTAGGTGAGTGGGTAAGTACCCCCTCATAGGCAAAGGGAAGGGGAA  50
      ||||||||   ||  ||||||||  |||||||| |||| || | ||| ||
seq2  GTGAGTAG--TAGCTGGTAAGTA--CCCTCATA-GCAACGGAAGGGGAAA  45

seq1  TGGGGTGAAGAATGGGACACTGCTAAGTGAGGCAACATTTGGAATGTAAA  100
      ||||||||   |||||||||||||||||||||| ||||||||||||||||
seq2  TGGGGTGA--GATGGGACACTGCTAAGTGAGGC-ACATTTGGAATGTAAA  92

seq1  TAAGGAAATATATATATATATATAGTTTCGAGATTAGAAATGGGGGAGGA  150
      ||    |||||||||||||||||||||||||||||||||   ||||||||
seq2  TA---GAATATATATATATATATAGTTTCGAGATTAGAA--TGGGGAGGA  137

seq1  TATAATTTCCTCTTTTCTAGAAACCTATAAGAAAAATAGCCTGTTGCTAT  200
      ||||  |||||| ||||||||||||||||   ||||||||||| ||||||
seq2  TATA--TTCCTC-TTTCTAGAAACCTATA--GAAAATAGCCTG-TGCTAT  181

seq1  GGGCAACAGATTCACGTATTTTTAAAGGCTAGGACAGATGCTAAATGATT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGCAACAGATTCACGTA-TTTTAAAGGCTAGGACAGATGCTAAATGATT  230

seq1  AGAGTCCTTAGTCCTACCAATGTCTGCCTTTTAGAGGCCAAGACCAGATA  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTTAGTCCTACCAATGTCTGCCTTTTAGAGGCCAAGACCAGATA  280

seq1  CAAGGCAATTGGTAGGGAGAGGCTGCTCTTTTGTGGCAGAAGGCAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAATTGGTAGGGAGAGGCTGCTCTTTTGTGGCAGAAGGCAGAGCC  330

seq1  CCTGAGATTAAGTAGCCATGGATGTGCAGTGAGTCCTGGACTCCCCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATTAAGTAGCCATGGATGTGCAGTGAGTCCTGGACTCCCCAGTC  380

seq1  CACATTCTGATCAGGAAGACTACGCAATGGGGGATGGCAATACCTTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGATCAGGAAGACTACGCAATGGGGGATGGCAATACCTTTGGG  430

seq1  AAAGATGGCCATACCTCTGTTGCTCTGCTTTAATGTCAAAGAGCCGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCCATACCTCTGTTGCTCTGCTTTAATGTCAAAGAGCCGCATG  480

seq1  TCTCTCTTCTGGCAGAGAGGGCTTTGGATTTTTTCTTCTGCATTGGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCTGGCAGAGAGGGCTTTGGATTTTTTCTTCTGCATTGGCTTC  530

seq1  TGGCAAGTAAAAAAGTTGCAAGATCATATCCTTGTGCTGCATATGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTAAAAAAGTTGCAAGATCATATCCTTGTGCTGCATATGGCTTT  580

seq1  ACAGTCTTGTTGGCTCCATTCCAGTATGCTGCTTCAGGAATGATCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTGTTGGCTCCATTCCAGTATGCTGCTTCAGGAATGATCACACA  630

seq1  AAGGGCCCAGCCTGCTATATTCCCAGTTCCTGCTAAGAGATGTGGTAGTG  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGGCCCAGCCTGCTCTATTCCCAGTTCCTGCTAAGAGATGTGGTAGTG  680

seq1  TGGCTCACAGTTCTGCTCTTAGATCAGGGCCCTCATATTCCATTCCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAGTTCTGCTCTTAGATCAGGGCCCTCATATTCCATTCCAGAG  730

seq1  AGCCACTATTTTTGATGATTCATCTCTCTACCTACTGAGGCTCTCAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTATTTTTGATGATTCATCTCTCTACCTACTGAGGCTCTCAAGTC  780

seq1  TCTTCTGCCAAGTGTTTGCTATACCCAACTGACAAGATGTAAAAGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCAAGTGTTTGCTATACCCAACTGACAAGATGTAAAAGAAACA  830

seq1  CTCACATGCTAATTGTGACAGTGTCCCACACTGCAGCCAGGTCAAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGCTAATTGTGACAGTGTCCCACACTGCAGCCAGGTCAAACACT  880

seq1  GACATCTTGTCCTGCTTCTTTAAGGATCCTCTACTGAGGATTCAAAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTGTCCTGCTTCTTTAAGGATCCTCTACTGAGGATTCAAAATCA  930

seq1  TTTGTAATGCAAGATTTTTCTAAGCCTTGTTGGAAGGAAGCTTGAGATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGCAAGATTTTTCTAAGCCTTGTTGGAAGGAAGCTTGAGATAT  980

seq1  GGATGATAGGGGTTATTTAATCAGTCATGACCAGCTTAAAGGGGAAGGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATAGGGGTTATTTAATCAGTCATGACCAGCTTAAAGGGGAAGGGA  1030

seq1  GCTGGAGTTCTTAGGGAAATGAGACACTCCAGAACTAGAGGAAAGGGGGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTTCTTAGGGAAATGAGACACTCCAGAACTAGAGGAAAGGGGGT  1080

seq1  TTCCAGGAAAGTCAAGTCCTTTGAGGAGGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAAAGTCAAGTCCTTTGAGGAGGAATTC  1114


seq1: chr7_46567771_46568581
seq2: B6Ng01-284C17.g_66_817

seq1  GAATTCCTAATTGATCTCATTCAACTTTTGCTCCAATCTAGGCACAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTGATCTCATTCAACTTTTGCTCCAATCTAGGCACAGTCC  50

seq1  TTCTTT-TCCTGGTTTGTCTTGCTCCTATAACTATGATACTATCTCGTTA  99
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTTTGTCCTGGTTTGTCTTGCTCCCATAACTATGATACTATCTCGTTA  100

seq1  CTCTGTCCCAGAGCAGAAATGTTTAGAGGGAAGAGAGCCATAGACAGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCAGAGCAGAAATGTTTAGAGGGAAGAGAGCCATAGACAGCTT  150

seq1  AGGCCTCTTGCTTTGCACTGTCCTATGCAGATCTCACTCTCTGTAGAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTTGCTTTGCACTGTCCTATGCAGATCTCACTCTCTGTAGAGAG  200

seq1  ACAGGGTCTCTCTAATATATACAGATGGACCTGGGTCTGCCTATGGAGTG  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCTCTCTAATATATACAGATGGACCTGGGTCTGCCTATGGAGTG  250

seq1  CTGCTCTCTTAAGTGAGTGCCAGCTCCACCAGGATTGTCTATATTCTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTTAAGTGAGTGCCAGCTCCACCAGGATTGTCTATATTCTATG  300

seq1  ATTAAAAATTAATGGCTGGGCAGTGGTGTCACATGCCTTTAAGCCCAGGG  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTAATGGCGGGGCAGTGGTGTCACATGCCTTTAAGCCCAGGG  350

seq1  CTTGGGGGTCAAAGGCAGGAGGATTTCTGAGTTCGAGGTCAGCCTGGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGGTCAAAGGCAGGAGGATTTCTGAGTTCGAGGTCAGCCTGGTCT  400

seq1  CCAGAGTGAGTTCCAATACAGCCCAGGCTACACAGAGAAACCCTGTCTTG  449
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  CCAGAGTGAGTTCCAATACAGCCCAGGCTACACAAAAAAACCCTGTCTTG  450

seq1  AAAAAACAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  500

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  549
       ||| |||||| ||| ||| ||| ||| ||| ||| ||| ||| ||    
seq2  GGAAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG----  546

seq1  AAAGAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG  599
                                                  || |||
seq2  --------------------------------------------AGAAAG  552

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAA  602

seq1  AGAAAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGTTTGCAAC  699
      |||||||||||||||            |||||||||||||||||||||||
seq2  AGAAAGGAAGAAAGG------------AAGAAAGAAAGAAAGTTTGCAAC  640

seq1  CCCATTGGAAGAACAATGTCAAACAACCAGAGCTTCCAGGTTCTAAACCA  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGGAAGTACAATGTCAAACAACCAGAGCTTCCAGGTTCTAAACCA  690

seq1  CCAAACAAGGAGTACACATGGAGGGATCCATGGCTCCAACTGCATATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAGGAGTACACATGGAGGGATCCATGGCTCCAACTGCATATTTA  740

seq1  GCAGAGGATGGC  811
      ||||||||||||
seq2  GCAGAGGATGGC  752


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