BAC Information

Click to search

BAC

Clone NameB6Ng01-284C24
Chromosome7 (Build37)
Map Location 11,242,064 - 11,353,223
singlet/doubletdoublet
Overlap geneEG628596, Nlrp4b, LOC333184, V1re13
Upstream geneLOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1
Downstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284C24.bB6Ng01-284C24.g
ACCGA082954GA082955
length1,123652
definitionB6Ng01-284C24.b B6Ng01-284C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,352,115 - 11,353,223)(11,242,064 - 11,242,713)
sequence
gaattctctaaaacataaaagtcaacaaaaagtgacataaatggatgagt
cctttcaaagctttaacctcaaaaagttgatgcacacagacctatgacct
ctccagtctcccataccacttcatacttggctatttttgaatgaaaatat
ggacaggaccacaccaaggtatcactgacaagaacttttttatttagata
aagacagaatatccagaggcatctggaagagtacaggtcagtgagagaaa
gtaatatattgatgaggccagtacacataactgggctatgagaagataaa
ggaatggagataaagagaagaagtgaaggcagcagaaagaggggaaaaaa
aagagaaaaaaaaaaccacaaagtgatatgagaagaatgaagaaaaaaaa
cctctgagcaaaaccaagatcacaacagggaagagaagctgaggggaact
aaatgaaggtctggttctagagagatttatgagcctggagtgaaaagtac
tgagaggagctagaacactgtaatacgtactagcaatgctgtgagattct
aattcagcatcctctctgatatgttaatagtctcctctaataggttaata
gttattaatagtaaatagttagccatttgtctgggataattttgggaccc
aaaaatcatgacatgttgaaattgtcttggatactgggtattagggaaag
gctctctaggggcaagtccatgcaacttgattatactttactactaatga
agatctatttcttctgcatgccattctgccatatactttgtgctccaggg
aatgacaaggaagtccaaattctgattactaattagttctttgagtttct
ctagtaattttctcttcttttttcttgtttttgtttttgtttctgacagg
aatttaggaacaatatgtttaaatgttacttcagacctttgtcaagatgc
tgtaatcatgggatctgggagatgactttaaaatcaacaatcttctcgga
aagaatccccagagatcatgaacctctaagtgaggggagaatgtctcatt
acatttcaaaaagaaactcatgttctcatagcctacagtgacattattag
gtactgaatggagccaatgagca
gaattcttatatggatataatcctcagtgccagcaggaagcaggtcatca
cccttacttgcatcagcaaaggggtcgaaagagtggaggttctggatagc
ggacatacgataagattccttttcctcggtggaaacggcctgcggaaggc
ggctgcgggagaaggcgggcgggggcgggggggggggacggagcgtcggg
aagcgagggggctcgagggggaggcagctgagtcctcggcggcgggctca
gtgactgggggataatttaaatttttaagtttagttaaaattcaggtcaa
atttatttaccacttgcattatttcatagtttaaccatttaatttaatga
aacttcgattcagataaactaatttgtattatgcagaaagattacattgc
taattttactaccagaattcttatatgttacaaattattgattagtatga
aatctatgaagatgactatttacaatggtacacctgcttttgagaagtca
ggaacaaatatccctttagcccagatcaggcactaatgacatatcaagaa
aaccttctattctggttaggtggtgagccaatggttttaactggggtaca
gagagtataggttgattatctgagatttcttagtcatgtagtgtatggag
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11352115_11353223
seq2: B6Ng01-284C24.b_43_1165 (reverse)

seq1  TGCTCAT--------TTCAGTA-CTATTATGGTCACTGTA-GCTATGAG-  39
      |||||||        ||||||| ||| ||  ||||||||| |||||||| 
seq2  TGCTCATTGGCTCCATTCAGTACCTAATAATGTCACTGTAGGCTATGAGA  50

seq1  ACATGAGTTTC-TTTTGAAATGGTAATGAGACATTCT-CCCTCACTTAGA  87
      ||||||||||| ||||||||| ||||||||||||||| ||||||||||||
seq2  ACATGAGTTTCTTTTTGAAAT-GTAATGAGACATTCTCCCCTCACTTAGA  99

seq1  GGTTCATGATCTCTTGGGATTCTTTCCGAGAAGATTGTTGATTTTAAAGT  137
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTTCATGATCTCTGGGGATTCTTTCCGAGAAGATTGTTGATTTTAAAGT  149

seq1  CATCT-CCAGAT-CCATGATTACAGCATCTTGACAAAGGTCTGAAGTAAC  185
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCAGATCCCATGATTACAGCATCTTGACAAAGGTCTGAAGTAAC  199

seq1  ATTTAAACATATTGTTCCTAAATTCCTGTCAGAAACAAAAACAAAAACAA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACATATTGTTCCTAAATTCCTGTCAGAAACAAAAACAAAAACAA  249

seq1  GAAAAAAGAAGAGAAAATTACTAGAGAAACTCAAAGAACTAATTAGTAAT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAGAGAAAATTACTAGAGAAACTCAAAGAACTAATTAGTAAT  299

seq1  CAGAATTTGGACTTCCTTGTCATTCCCTGGAGCACAAAGTATATGGCAGA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGGACTTCCTTGTCATTCCCTGGAGCACAAAGTATATGGCAGA  349

seq1  ATGGCATGCAGAAGAAATAGATCTTCATTAGTAGTAAAGTATAATCAAGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGCAGAAGAAATAGATCTTCATTAGTAGTAAAGTATAATCAAGT  399

seq1  TGCATGGACTTGCCCCTAGAGAGCCTTTCCCTAATACCCAGTATCCAAGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGACTTGCCCCTAGAGAGCCTTTCCCTAATACCCAGTATCCAAGA  449

seq1  CAATTTCAACATGTCATGATTTTTGGGTCCCAAAATTATCCCAGACAAAT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAACATGTCATGATTTTTGGGTCCCAAAATTATCCCAGACAAAT  499

seq1  GGCTAACTATTTACTATTAATAACTATTAACCTATTAGAGGAGACTATTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTATTTACTATTAATAACTATTAACCTATTAGAGGAGACTATTA  549

seq1  ACATATCAGAGAGGATGCTGAATTAGAATCTCACAGCATTGCTAGTACGT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGAGAGGATGCTGAATTAGAATCTCACAGCATTGCTAGTACGT  599

seq1  ATTACAGTGTTCTAGCTCCTCTCAGTACTTTTCACTCCAGGCTCATAAAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGTTCTAGCTCCTCTCAGTACTTTTCACTCCAGGCTCATAAAT  649

seq1  CTCTCTAGAACCAGACCTTCATTTAGTTCCCCTCAGCTTCTCTTCCCTGT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGAACCAGACCTTCATTTAGTTCCCCTCAGCTTCTCTTCCCTGT  699

seq1  TGTGATCTTGGTTTTGCTCAGAGGTTTTTTTTCTTCATTCTTCTCATATC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTTGGTTTTGCTCAGAGGTTTTTTTTCTTCATTCTTCTCATATC  749

seq1  ACTTTGTGGTTTTTTTTTTCTCTTTTTTTTCCCCTCTTTCTGCTGCCTTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGGTTTTTTTTTTCTCTTTTTTTTCCCCTCTTTCTGCTGCCTTC  799

seq1  ACTTCTTCTCTTTATCTCCATTCCTTTATCTTCTCATAGCCCAGTTATGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTCTTTATCTCCATTCCTTTATCTTCTCATAGCCCAGTTATGT  849

seq1  GTACTGGCCTCATCAATATATTACTTTCTCTCACTGACCTGTACTCTTCC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCCTCATCAATATATTACTTTCTCTCACTGACCTGTACTCTTCC  899

seq1  AGATGCCTCTGGATATTCTGTCTTTATCTAAATAAAAAAGTTCTTGTCAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTCTGGATATTCTGTCTTTATCTAAATAAAAAAGTTCTTGTCAG  949

seq1  TGATACCTTGGTGTGGTCCTGTCCATATTTTCATTCAAAAATAGCCAAGT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTTGGTGTGGTCCTGTCCATATTTTCATTCAAAAATAGCCAAGT  999

seq1  ATGAAGTGGTATGGGAGACTGGAGAGGTCATAGGTCTGTGTGCATCAACT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGGTATGGGAGACTGGAGAGGTCATAGGTCTGTGTGCATCAACT  1049

seq1  TTTTGAGGTTAAAGCTTTGAAAGGACTCATCCATTTATGTCACTTTTTGT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTTAAAGCTTTGAAAGGACTCATCCATTTATGTCACTTTTTGT  1099

seq1  TGACTTTTATGTTTTAGAGAATTC  1109
      ||||||||||||||||||||||||
seq2  TGACTTTTATGTTTTAGAGAATTC  1123

seq1: chr7_11242064_11242713
seq2: B6Ng01-284C24.g_63_714

seq1  GAATTCTTATATGGATATAATCCTCAGTGCCAGCAGGAAGCAGGTCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATATGGATATAATCCTCAGTGCCAGCAGGAAGCAGGTCATCA  50

seq1  CCCTTACTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGC  100

seq1  GGACATACGATAAGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACGATAAGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAGGC  150

seq1  GGCTGCGGGAGAAGGCGGGCGGGGGCGGGGGGGGGGGACGGAGCGTCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGGGAGAAGGCGGGCGGGGGCGGGGGGGGGGGACGGAGCGTCGGG  200

seq1  AAGCGAGGGGGCTCGAGGGGGAGGCAGCTGAGTCCTCGGCGGCGGGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAGGGGGCTCGAGGGGGAGGCAGCTGAGTCCTCGGCGGCGGGCTCA  250

seq1  GTGACTGGGGGATAATTTAAATTTTTAAGTTTAGTTAAAATTCAGGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGGGGATAATTTAAATTTTTAAGTTTAGTTAAAATTCAGGTCAA  300

seq1  ATTTATTTACCACTTGCATTATTTCATAGTTTAACCATTTAATTTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTACCACTTGCATTATTTCATAGTTTAACCATTTAATTTAATGA  350

seq1  AACTTCGATTCAGATAAACTAATTTGTATTATGCAGAAAGATTACATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCGATTCAGATAAACTAATTTGTATTATGCAGAAAGATTACATTGC  400

seq1  TAATTTTACTACCAGAATTCTTATATGTTACAAATTATTGATTAGTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTACTACCAGAATTCTTATATGTTACAAATTATTGATTAGTATGA  450

seq1  AATCTATGAAGATGACTATTTACAATGGTACACCTGCTTTTGAGAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGAAGATGACTATTTACAATGGTACACCTGCTTTTGAGAAGTCA  500

seq1  GGAACAAATATCCCTTTAGCCCAGATCAGGCACTAATGACATATCAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAATATCCCTTTAGCCCAGATCAGGCACTAATGACATATCAAGAA  550

seq1  AACCTTCTATTCTGGTTAGGTGGTGAGCCAATGGTTTTAACTGGGGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTATTCTGGTTAGGTGGTGAGCCAATGGTTTTAACTGGGGTACA  600

seq1  GAGAGTATAGG-TGATTATCTGAGA-TTCTTAGTCATGTAGTGTATGGAG  648
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GAGAGTATAGGTTGATTATCTGAGATTTCTTAGTCATGTAGTGTATGGAG  650

seq1  AC  650
      ||
seq2  AC  652