BAC Information

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BAC

Clone NameB6Ng01-285J13
Chromosome7 (Build37)12 (Build37)
Map Location 147,596,179 - 147,596,44393,488,360 - 93,489,271
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneInpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531
Downstream geneOlfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285J13.bB6Ng01-285J13.g
ACCGA084006GA084007
length791913
definitionB6Ng01-285J13.b B6Ng01-285J13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,596,179 - 147,596,443)(93,488,360 - 93,489,271)
sequence
gaattctgtgtttaattggtgtactggctagttttgtgtcaacttgacac
agctggagttatcacagagaaaggagcttcagttgaggaaatgcctccat
gagatccaactgtatggcattttctcaattagtgatcaagggggaaaggc
tccctgtgggtgggaccatctctgggctggtagtcttgggttctataaga
gagcaggctgagcaagccaggtgaggcaagccagtaaagaacattccctc
catggcctctgaatcagctcctgctttctgacctgcttgagttccagtcc
tgacttcctttggtgataaacagcagtatggaagtgtaagctgaataaac
cctttcctccccaagtgcttcttggtcataatgtttgtgcaagaatagaa
accctgactaagacaattggtttacttattttcttgctatctggttagtt
tgatttctttctttattttgtatattaacccaatatcatatgtatagttg
gtaaaaatctttgcctgttctgtagcctgctgctttgtctgaatcacggt
gtcctttgctgagcagaagcgcagaagcttttctgtttcatgggttctca
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttccttcttctttcttcttctttcttctttcttctttct
tcttctttcttctttcttcttctttctttcttctttctttcttcttcttt
ctttcttcttctttctttcttcttctttctttcttcttctt
gaattcccatatactgagttatagaaccttcacaggaccaagggcctctc
ctcccattgatgaccgactaggccaccctctgataaatatgaaagctaga
gccatgagttccaccatgtgttttcttttgtaacccaccaaccaattttt
atattcttttacaaagcaaatcagctttgtatcagctgtagtgcctaggt
atagttttgtcattggctgagaagagggatggtgcacaggaacgttgaat
agtgtttctgtgtctaaagatggtttaaaaagatgttttcataacaactc
agtgactcgtttccaatacctttttttttccaatttattccatggactgt
tctcctacaaatgtcccttttacagatatgtggtgggtgggtgctgccta
gtgtaaaatcttctctttctttttatattttgatctccttcatagctaac
ttcttttttttataagaattcatgttggatagcagtacttcctcacccaa
aggggttatgggttatgtactccctggccttgcatgtctgggcacagatg
aaatggacacatattaactctgtcaattagatgtgtgacatgattttgct
tttgagaatattcatttctacaggatgaaggagtacataacttattaaat
atagatgaaactttaaagatattctatgtggtgctgaataaccacaaggc
ttattaaacatgtcagatcaaataatctatgataagtgtgaaacaaatag
acagcaagtaaagccagcgtggtagcacacacatataatcccagaacatg
ggaggtggaagtgggtaggattgggatttcaaggccgattcatggaaatt
tcaagttcaggcctactctccacaaggctctgtcggaagggaggaggaaa
tggtgaggaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147596179_147596443
seq2: B6Ng01-285J13.b_398_519 (reverse)

seq1  AATATACAAAATACAAATCAAAACAACTCTGATATTCCATCTTGTACTGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGAATGGTTAAGTTCTGGGAGCCTGATGGCTTGAAAGGGAACACAGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGACTCTACTGTGGTTTTAAAGACTGATGGTCTCTGGGACTGTTCTAT  150
          | | |||        ||||||  ||                || | 
seq2  ----AATATAC----AAAATAAAGAAAGA--------------AATCAAA  28

seq1  GTAAATTCTGAGGGGTAAAAGACACTGGTTTAGGGAATTAACACCTATAG  200
       |||   | ||  |    |||| | |         || ||| ||| ||  
seq2  CTAA--CCAGATAG---CAAGAAAAT---------AAGTAA-ACCAAT--  61

seq1  GGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAA  250
         ||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  ---TGTCTTAGTCAGGGTTTCTATTCTTGCACAAACATTATGACCAAGAA  108

seq1  GCAAGTTGGGGAGGA  265
      || | ||||||||||
seq2  GC-ACTTGGGGAGGA  122

seq1: chr12_93488360_93489271
seq2: B6Ng01-285J13.g_65_977 (reverse)

seq1  TTCCTCCTCCCCCTTTTCCTCCT-CCTTCCGACAGAGCCTTGTGGAGTGT  49
      |||||||| | || ||||||||| ||||||||||||||||||||||| ||
seq2  TTCCTCCT-CACCATTTCCTCCTCCCTTCCGACAGAGCCTTGTGGAGAGT  49

seq1  AGG-CTGAACTTGAAATCTCCATGAATCGGCCTTGAAATCCCAATCCTAC  98
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGCCTGAACTTGAAATTTCCATGAATCGGCCTTGAAATCCCAATCCTAC  99

seq1  CCACTTCCACCTCCCATGTTCTGGGATTATATGTGTGTGCTACCACGCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCACCTCCCATGTTCTGGGATTATATGTGTGTGCTACCACGCTG  149

seq1  GCTTTACTTGCTGTCTATTTGTTTCACACTTATCATAGATTATTTGATCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTGCTGTCTATTTGTTTCACACTTATCATAGATTATTTGATCT  199

seq1  GACATGTTTAATAAGCCTTGTGGTTATTCAGCACCACATAGAATATCTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTAATAAGCCTTGTGGTTATTCAGCACCACATAGAATATCTTT  249

seq1  AAAGTTTCATCTATATTTAATAAGTTATGTACTCCTTCATCCTGTAGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCATCTATATTTAATAAGTTATGTACTCCTTCATCCTGTAGAAA  299

seq1  TGAATATTCTCAAAAGCAAAATCATGTCACACATCTAATTGACAGAGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCTCAAAAGCAAAATCATGTCACACATCTAATTGACAGAGTTA  349

seq1  ATATGTGTCCATTTCATCTGTGCCCAGACATGCAAGGCCAGGGAGTACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCCATTTCATCTGTGCCCAGACATGCAAGGCCAGGGAGTACAT  399

seq1  AACCCATAACCCCTTTGGGTGAGGAAGTACTGCTATCCAACATGAATTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAACCCCTTTGGGTGAGGAAGTACTGCTATCCAACATGAATTCT  449

seq1  TATAAAAAAAAGAAGTTAGCTATGAAGGAGATCAAAATATAAAAAGAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAAAAGAAGTTAGCTATGAAGGAGATCAAAATATAAAAAGAAAG  499

seq1  AGAAGATTTTACACTAGGCAGCACCCACCCACCACATATCTGTAAAAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTTTACACTAGGCAGCACCCACCCACCACATATCTGTAAAAGGG  549

seq1  ACATTTGTAGGAGAACAGTCCATGGAATAAATTGGAAAAAAAAAGGTATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTAGGAGAACAGTCCATGGAATAAATTGGAAAAAAAAAGGTATT  599

seq1  GGAAACGAGTCACTGAGTTGTTATGAAAACATCTTTTTAAACCATCTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGAGTCACTGAGTTGTTATGAAAACATCTTTTTAAACCATCTTTA  649

seq1  GACACAGAAACACTATTCAACGTTCCTGTGCACCATCCCTCTTCTCAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAACACTATTCAACGTTCCTGTGCACCATCCCTCTTCTCAGCC  699

seq1  AATGACAAAACTATACCTAGGCACTACAGCTGATACAAAGCTGATTTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAAACTATACCTAGGCACTACAGCTGATACAAAGCTGATTTGCT  749

seq1  TTGTAAAAGAATATAAAAATTGGTTGGTGGGTTACAAAAGAAAACACATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAGAATATAAAAATTGGTTGGTGGGTTACAAAAGAAAACACATG  799

seq1  GTGGAACTCATGGCTCTAGCTTTCATATTTATCAGAGGGTGGCCTAGTCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTCATGGCTCTAGCTTTCATATTTATCAGAGGGTGGCCTAGTCG  849

seq1  GTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTATAACTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTATAACTCA  899

seq1  GTATATGGGAATTC  912
      ||||||||||||||
seq2  GTATATGGGAATTC  913