BAC Information

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BAC

Clone NameB6Ng01-287B20
Chromosome7 (Build37)
Map Location 89,004,996 - 89,144,281
singlet/doubletdoublet
Overlap geneTm6sf1, LOC100043161, Hdgfrp3, Bnc1
Upstream geneZscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287B20.bB6Ng01-287B20.g
ACCGA085129GA085130
length6221,084
definitionB6Ng01-287B20.b B6Ng01-287B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,004,996 - 89,005,617)(89,143,191 - 89,144,281)
sequence
gaattctgtaagggctctgggtcccagtcttggctttcacttctctaaag
ggatcactgactgacgagcccccatgggcagccgaaggcctgggtggtca
gtggaaaggcgccagcggtggccctgctgaagttgattgtgggctgctgg
aggaggaagtaactggctgtgcttttcatagcagttggtgctaaggaaat
tgcatcaatctataccctgcagcccgtgccagacctccagactgctagcg
gagtatgcacacagtcaatggttttctctcactgctgaggtcacctcatc
cagacggcatgagtgagcactgcgacgctcccttagacacaggctgcccc
tgtgcttggcctttggtgcatctcctgaagcagcagctccgagcagtcag
atgttttgtgcctgtcaacagagcacagggacctaggctcctaaagtaat
accattcattgaacacctctgtgcttggagccctcgctgaacaggccatg
tccttgctgaggagtcatgcattaaaacagacaccatcagatatatagag
tagcatgctatgaagacaacagagcagggcatagggaagggggtgagcgt
ggtaggggaaggaagtggatgt
gaattcagtgaacatgccagatctgtttcctgtatcatgtctcttgcttg
cttactagccttttgataaaccattagagctgtggcgttttgttaattac
caaactcctggtgacagactgaacttgcctgttaaaacttgtgttgtaat
ttgaggattaaaagccacacctctgggaaatggaagtatcagaactgatt
tggtgttggagacaaaagtgttagaagccacagttcaacaaagtggattt
tccgggcacagttagcaatgacatttttagaagtcttacatcgtgtcatt
gatgggaatgaaattttaagagtctacaaatccagaatgtgccatttaag
tctcctcacccacactggtataggtaaagtccttcttttttcaaagcacc
tcctatgtacgtaaaagcattgcactgtgccagatacagtaaaaatcgga
agtccttacccatcacattctcaaaatccagtgaagaaaagcctcttcta
aaagttaaagtattggtccatgtatgtctcagagtatttttttttccttt
tactttggctgaaggaaaagaacatggctatagccagaaggagactctac
ctggaagaaccttgcctggcctcgggtttatgaatcatgggtctatgtca
aagattcctaacctcctaacgccaatgctacttaaaagttccaagactga
gccaagaatggctcctgggacgccggcgctctgctttttcttccacctag
gacctcgtagccacagtgggcatgagtgtctgtgttttggttgaacagct
ctttattggaaaccatctccatttaaatgacgagagtaatttaattttca
gatttttccgggggccacggactttgggaacgctttaatcagagtttcac
ctggtcctcccatgatttgagtctttgcctgtcagttgcattaccagact
gaccctcattgttcacaaagtgatgacagtagcacgaagtgtcacagagt
caacagagtcacaggagtcttcttctcacacctacggttaaaaaagtgtt
ttgctcttaattcactaaagtccaagcctataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89004996_89005617
seq2: B6Ng01-287B20.b_45_666

seq1  GAATTCTGTAAGGGCTCTGGGTCCCAGTCTTGGCTTTCACTTCTCTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGGGCTCTGGGTCCCAGTCTTGGCTTTCACTTCTCTAAAG  50

seq1  GGATCACTGACTGACGAGCCCCCATGGGCAGCCGAAGGCCTGGGTGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACTGACTGACGAGCCCCCATGGGCAGCCGAAGGCCTGGGTGGTCA  100

seq1  GTGGAAAGGCGCCAGCGGTGGCCCTGCTGAAGTTGATTGTGGGCTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGGCGCCAGCGGTGGCCCTGCTGAAGTTGATTGTGGGCTGCTGG  150

seq1  AGGAGGAAGTAACTGGCTGTGCTTTTCATAGCAGTTGGTGCTAAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGTAACTGGCTGTGCTTTTCATAGCAGTTGGTGCTAAGGAAAT  200

seq1  TGCATCAATCTATACCCTGCAGCCCGTGCCAGACCTCCAGACTGCTAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATCTATACCCTGCAGCCCGTGCCAGACCTCCAGACTGCTAGCG  250

seq1  GAGTATGCACACAGTCAATGGTTTTCTCTCACTGCTGAGGTCACCTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGCACACAGTCAATGGTTTTCTCTCACTGCTGAGGTCACCTCATC  300

seq1  CAGACGGCATGAGTGAGCACTGCGACGCTCCCTTAGACACAGGCTGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGCATGAGTGAGCACTGCGACGCTCCCTTAGACACAGGCTGCCCC  350

seq1  TGTGCTTGGCCTTTGGTGCATCTCCTGAAGCAGCAGCTCCGAGCAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGGCCTTTGGTGCATCTCCTGAAGCAGCAGCTCCGAGCAGTCAG  400

seq1  ATGTTTTGTGCCTGTCAACAGAGCACAGGGACCTAGGCTCCTAAAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTGCCTGTCAACAGAGCACAGGGACCTAGGCTCCTAAAGTAAT  450

seq1  ACCATTCATTGAACACCTCTGTGCTTGGAGCCCTCGCTGAACAGGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCATTGAACACCTCTGTGCTTGGAGCCCTCGCTGAACAGGCCATG  500

seq1  TCCTTGCTGAGGAGTCATGCATTAAAACAGACACCATCAGATATATAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTGAGGAGTCATGCATTAAAACAGACACCATCAGATATATAGAG  550

seq1  TAGCATGCTATGAAGACAACAGAGCAGGGCATAGGGAAGGGGGTGAGCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCTATGAAGACAACAGAGCAGGGCATAGGGAAGGGGGTGAGCGT  600

seq1  GGTAGGGGAAGGAAGTGGATGT  622
      ||||||||||||||||||||||
seq2  GGTAGGGGAAGGAAGTGGATGT  622

seq1: chr7_89143191_89144281
seq2: B6Ng01-287B20.g_67_1150 (reverse)

seq1  TTTATAGCCTGGGACTTTGGTGGATTTAAGGAGCAAAACACTTTTTTTAA  50
      ||||||| || ||||||| ||| |||  | |||||||||||||||||   
seq2  TTTATAGGCTTGGACTTTAGTGAATT--AAGAGCAAAACACTTTTTT---  45

seq1  ACCCGTAGGTGTGAAGAAG-AGACT-CTGTGACTCCTGTTGGACTCTGTG  98
      | ||||||||||| ||||| ||||| |||||||| ||||| |||||||||
seq2  AACCGTAGGTGTG-AGAAGAAGACTCCTGTGACT-CTGTT-GACTCTGTG  92

seq1  ACACTCGTTGCTACTGTCCTTCACTTTGTGAACAATGAGGGTCAGTCTGG  148
      |||||   ||||||||| | ||||||||||||||||||||||||||||||
seq2  ACACTTCGTGCTACTGT-CATCACTTTGTGAACAATGAGGGTCAGTCTGG  141

seq1  TAATGCAACTGACAGGCAAAGACTCAAATCATGGGAGGACCAGGTGAAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAACTGACAGGCAAAGACTCAAATCATGGGAGGACCAGGTGAAAC  191

seq1  TCTGATTAAAGCGTTCCCAAAGTCCGTGGCCCCCGGAAAAATCTGAAAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTAAAGCGTTCCCAAAGTCCGTGGCCCCCGGAAAAATCTGAAAAT  241

seq1  TAAATTACTCTCGTCATTTAAATGGAGATGGTTTCCAATAAAGAGCTGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACTCTCGTCATTTAAATGGAGATGGTTTCCAATAAAGAGCTGTT  291

seq1  CAACCAAAACACAGACACTCATGCCCACTGTGGCTACGAGGTCCTAGGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAACACAGACACTCATGCCCACTGTGGCTACGAGGTCCTAGGTG  341

seq1  GAAGAAAAAGCAGAGCGCCGGCGTCCCAGGAGCCATTCTTGGCTCAGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAGCAGAGCGCCGGCGTCCCAGGAGCCATTCTTGGCTCAGTCT  391

seq1  TGGAACTTTTAAGTAGCATTGGCGTTAGGAGGTTAGGAATCTTTGACATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTTTAAGTAGCATTGGCGTTAGGAGGTTAGGAATCTTTGACATA  441

seq1  GACCCATGATTCATAAACCCGAGGCCAGGCAAGGTTCTTCCAGGTAGAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGATTCATAAACCCGAGGCCAGGCAAGGTTCTTCCAGGTAGAGT  491

seq1  CTCCTTCTGGCTATAGCCATGTTCTTTTCCTTCAGCCAAAGTAAAAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGGCTATAGCCATGTTCTTTTCCTTCAGCCAAAGTAAAAGGAA  541

seq1  AAAAAAATACTCTGAGACATACATGGACCAATACTTTAACTTTTAGAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATACTCTGAGACATACATGGACCAATACTTTAACTTTTAGAAGA  591

seq1  GGCTTTTCTTCACTGGATTTTGAGAATGTGATGGGTAAGGACTTCCGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTTCACTGGATTTTGAGAATGTGATGGGTAAGGACTTCCGATT  641

seq1  TTTACTGTATCTGGCACAGTGCAATGCTTTTACGTACATAGGAGGTGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTATCTGGCACAGTGCAATGCTTTTACGTACATAGGAGGTGCTT  691

seq1  TGAAAAAAGAAGGACTTTACCTATACCAGTGTGGGTGAGGAGACTTAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAGAAGGACTTTACCTATACCAGTGTGGGTGAGGAGACTTAAAT  741

seq1  GGCACATTCTGGATTTGTAGACTCTTAAAATTTCATTCCCATCAATGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTCTGGATTTGTAGACTCTTAAAATTTCATTCCCATCAATGACA  791

seq1  CGATGTAAGACTTCTAAAAATGTCATTGCTAACTGTGCCCGGAAAATCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAAGACTTCTAAAAATGTCATTGCTAACTGTGCCCGGAAAATCCA  841

seq1  CTTTGTTGAACTGTGGCTTCTAACACTTTTGTCTCCAACACCAAATCAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGAACTGTGGCTTCTAACACTTTTGTCTCCAACACCAAATCAGT  891

seq1  TCTGATACTTCCATTTCCCAGAGGTGTGGCTTTTAATCCTCAAATTACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACTTCCATTTCCCAGAGGTGTGGCTTTTAATCCTCAAATTACAA  941

seq1  CACAAGTTTTAACAGGCAAGTTCAGTCTGTCACCAGGAGTTTGGTAATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTTTAACAGGCAAGTTCAGTCTGTCACCAGGAGTTTGGTAATTA  991

seq1  ACAAAACGCCACAGCTCTAATGGTTTATCAAAAGGCTAGTAAGCAAGCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACGCCACAGCTCTAATGGTTTATCAAAAGGCTAGTAAGCAAGCAA  1041

seq1  GAGACATGATACAGGAAACAGATCTGGCATGTTCACTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGATACAGGAAACAGATCTGGCATGTTCACTGAATTC  1084